Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21635

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21630 and ABZR87_RS21635 overlap by 11 nucleotidesABZR87_RS21635 and ABZR87_RS21640 are separated by 3 nucleotides ABZR87_RS21630: ABZR87_RS21630 - mechanosensitive ion channel family protein, at 1,233,493 to 1,234,626 _RS21630 ABZR87_RS21635: ABZR87_RS21635 - hypothetical protein, at 1,234,616 to 1,235,497 _RS21635 ABZR87_RS21640: ABZR87_RS21640 - DUF2334 domain-containing protein, at 1,235,501 to 1,237,219 _RS21640 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1233.681 kb on + strand, within ABZR87_RS21630at 1233.681 kb on + strand, within ABZR87_RS21630at 1233.727 kb on + strand, within ABZR87_RS21630at 1233.727 kb on + strand, within ABZR87_RS21630at 1233.728 kb on - strand, within ABZR87_RS21630at 1233.962 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.568 kb on + strandat 1234.569 kb on - strandat 1234.569 kb on - strandat 1234.569 kb on - strandat 1234.617 kb on + strandat 1234.714 kb on - strand, within ABZR87_RS21635at 1234.714 kb on - strand, within ABZR87_RS21635at 1234.714 kb on - strand, within ABZR87_RS21635at 1234.753 kb on - strand, within ABZR87_RS21635at 1234.755 kb on + strand, within ABZR87_RS21635at 1234.756 kb on - strand, within ABZR87_RS21635at 1234.853 kb on + strand, within ABZR87_RS21635at 1234.853 kb on + strand, within ABZR87_RS21635at 1234.897 kb on - strand, within ABZR87_RS21635at 1234.897 kb on - strand, within ABZR87_RS21635at 1234.897 kb on - strand, within ABZR87_RS21635at 1234.915 kb on - strand, within ABZR87_RS21635at 1235.004 kb on + strand, within ABZR87_RS21635at 1235.005 kb on - strand, within ABZR87_RS21635at 1235.007 kb on + strand, within ABZR87_RS21635at 1235.007 kb on + strand, within ABZR87_RS21635at 1235.007 kb on + strand, within ABZR87_RS21635at 1235.052 kb on + strand, within ABZR87_RS21635at 1235.053 kb on - strand, within ABZR87_RS21635at 1235.160 kb on + strand, within ABZR87_RS21635at 1235.196 kb on + strand, within ABZR87_RS21635at 1235.196 kb on + strand, within ABZR87_RS21635at 1235.196 kb on + strand, within ABZR87_RS21635at 1235.197 kb on - strand, within ABZR87_RS21635at 1235.197 kb on - strand, within ABZR87_RS21635at 1235.238 kb on + strand, within ABZR87_RS21635at 1235.274 kb on + strand, within ABZR87_RS21635at 1235.274 kb on + strand, within ABZR87_RS21635at 1235.274 kb on + strand, within ABZR87_RS21635at 1235.391 kb on + strand, within ABZR87_RS21635at 1235.530 kb on + strandat 1235.530 kb on + strandat 1235.659 kb on - strandat 1235.659 kb on - strandat 1235.692 kb on - strand, within ABZR87_RS21640at 1235.692 kb on - strand, within ABZR87_RS21640at 1235.692 kb on - strand, within ABZR87_RS21640at 1235.692 kb on - strand, within ABZR87_RS21640at 1235.716 kb on + strand, within ABZR87_RS21640at 1235.716 kb on + strand, within ABZR87_RS21640at 1235.716 kb on + strand, within ABZR87_RS21640at 1235.717 kb on - strand, within ABZR87_RS21640at 1235.731 kb on - strand, within ABZR87_RS21640at 1235.731 kb on - strand, within ABZR87_RS21640at 1235.731 kb on - strand, within ABZR87_RS21640at 1235.772 kb on + strand, within ABZR87_RS21640at 1235.773 kb on - strand, within ABZR87_RS21640at 1235.775 kb on + strand, within ABZR87_RS21640at 1235.793 kb on + strand, within ABZR87_RS21640at 1235.793 kb on + strand, within ABZR87_RS21640at 1235.794 kb on - strand, within ABZR87_RS21640at 1235.794 kb on - strand, within ABZR87_RS21640at 1235.868 kb on + strand, within ABZR87_RS21640at 1235.869 kb on - strand, within ABZR87_RS21640at 1235.869 kb on - strand, within ABZR87_RS21640at 1235.871 kb on + strand, within ABZR87_RS21640at 1235.871 kb on + strand, within ABZR87_RS21640at 1235.871 kb on + strand, within ABZR87_RS21640at 1235.872 kb on - strand, within ABZR87_RS21640at 1235.886 kb on + strand, within ABZR87_RS21640at 1235.887 kb on - strand, within ABZR87_RS21640at 1235.887 kb on - strand, within ABZR87_RS21640at 1235.940 kb on + strand, within ABZR87_RS21640at 1236.120 kb on + strand, within ABZR87_RS21640at 1236.121 kb on - strand, within ABZR87_RS21640at 1236.132 kb on + strand, within ABZR87_RS21640at 1236.132 kb on + strand, within ABZR87_RS21640at 1236.238 kb on - strand, within ABZR87_RS21640at 1236.258 kb on + strand, within ABZR87_RS21640at 1236.259 kb on - strand, within ABZR87_RS21640at 1236.259 kb on - strand, within ABZR87_RS21640at 1236.301 kb on - strand, within ABZR87_RS21640at 1236.301 kb on - strand, within ABZR87_RS21640at 1236.435 kb on + strand, within ABZR87_RS21640at 1236.457 kb on - strand, within ABZR87_RS21640

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,233,681 + ABZR87_RS21630 0.17 -0.5
1,233,681 + ABZR87_RS21630 0.17 +7.0
1,233,727 + ABZR87_RS21630 0.21 +0.6
1,233,727 + ABZR87_RS21630 0.21 -0.2
1,233,728 - ABZR87_RS21630 0.21 -0.3
1,233,962 + ABZR87_RS21630 0.41 +1.1
1,234,270 + ABZR87_RS21630 0.69 +0.6
1,234,270 + ABZR87_RS21630 0.69 -1.7
1,234,270 + ABZR87_RS21630 0.69 -0.1
1,234,270 + ABZR87_RS21630 0.69 -0.4
1,234,435 + ABZR87_RS21630 0.83 +5.1
1,234,435 + ABZR87_RS21630 0.83 -0.4
1,234,435 + ABZR87_RS21630 0.83 +0.9
1,234,435 + ABZR87_RS21630 0.83 -0.2
1,234,435 + ABZR87_RS21630 0.83 +0.6
1,234,568 + -1.8
1,234,569 - -2.0
1,234,569 - -1.8
1,234,569 - -0.0
1,234,617 + +0.8
1,234,714 - ABZR87_RS21635 0.11 -0.3
1,234,714 - ABZR87_RS21635 0.11 +1.8
1,234,714 - ABZR87_RS21635 0.11 +2.5
1,234,753 - ABZR87_RS21635 0.16 +0.4
1,234,755 + ABZR87_RS21635 0.16 -1.3
1,234,756 - ABZR87_RS21635 0.16 +4.6
1,234,853 + ABZR87_RS21635 0.27 +1.1
1,234,853 + ABZR87_RS21635 0.27 -1.7
1,234,897 - ABZR87_RS21635 0.32 -0.1
1,234,897 - ABZR87_RS21635 0.32 +2.1
1,234,897 - ABZR87_RS21635 0.32 -1.8
1,234,915 - ABZR87_RS21635 0.34 +1.1
1,235,004 + ABZR87_RS21635 0.44 -0.3
1,235,005 - ABZR87_RS21635 0.44 -2.4
1,235,007 + ABZR87_RS21635 0.44 -0.9
1,235,007 + ABZR87_RS21635 0.44 -0.3
1,235,007 + ABZR87_RS21635 0.44 +0.4
1,235,052 + ABZR87_RS21635 0.49 -1.6
1,235,053 - ABZR87_RS21635 0.50 +0.7
1,235,160 + ABZR87_RS21635 0.62 +0.8
1,235,196 + ABZR87_RS21635 0.66 +0.6
1,235,196 + ABZR87_RS21635 0.66 +0.3
1,235,196 + ABZR87_RS21635 0.66 -0.1
1,235,197 - ABZR87_RS21635 0.66 +1.0
1,235,197 - ABZR87_RS21635 0.66 +0.4
1,235,238 + ABZR87_RS21635 0.71 -1.1
1,235,274 + ABZR87_RS21635 0.75 +3.9
1,235,274 + ABZR87_RS21635 0.75 +2.6
1,235,274 + ABZR87_RS21635 0.75 +0.1
1,235,391 + ABZR87_RS21635 0.88 -0.3
1,235,530 + +1.6
1,235,530 + -1.2
1,235,659 - +0.4
1,235,659 - -1.2
1,235,692 - ABZR87_RS21640 0.11 -0.7
1,235,692 - ABZR87_RS21640 0.11 +0.9
1,235,692 - ABZR87_RS21640 0.11 +0.1
1,235,692 - ABZR87_RS21640 0.11 -0.4
1,235,716 + ABZR87_RS21640 0.13 -1.4
1,235,716 + ABZR87_RS21640 0.13 -1.4
1,235,716 + ABZR87_RS21640 0.13 +0.4
1,235,717 - ABZR87_RS21640 0.13 -0.7
1,235,731 - ABZR87_RS21640 0.13 -1.5
1,235,731 - ABZR87_RS21640 0.13 -1.7
1,235,731 - ABZR87_RS21640 0.13 -0.8
1,235,772 + ABZR87_RS21640 0.16 -0.1
1,235,773 - ABZR87_RS21640 0.16 +0.2
1,235,775 + ABZR87_RS21640 0.16 -0.7
1,235,793 + ABZR87_RS21640 0.17 -0.9
1,235,793 + ABZR87_RS21640 0.17 +1.0
1,235,794 - ABZR87_RS21640 0.17 -0.3
1,235,794 - ABZR87_RS21640 0.17 -1.2
1,235,868 + ABZR87_RS21640 0.21 -0.7
1,235,869 - ABZR87_RS21640 0.21 -0.1
1,235,869 - ABZR87_RS21640 0.21 +1.8
1,235,871 + ABZR87_RS21640 0.22 +3.3
1,235,871 + ABZR87_RS21640 0.22 -2.4
1,235,871 + ABZR87_RS21640 0.22 -0.4
1,235,872 - ABZR87_RS21640 0.22 +0.1
1,235,886 + ABZR87_RS21640 0.22 +3.1
1,235,887 - ABZR87_RS21640 0.22 -0.1
1,235,887 - ABZR87_RS21640 0.22 -0.0
1,235,940 + ABZR87_RS21640 0.26 +1.4
1,236,120 + ABZR87_RS21640 0.36 -1.3
1,236,121 - ABZR87_RS21640 0.36 +1.0
1,236,132 + ABZR87_RS21640 0.37 -0.5
1,236,132 + ABZR87_RS21640 0.37 -0.1
1,236,238 - ABZR87_RS21640 0.43 -0.8
1,236,258 + ABZR87_RS21640 0.44 -0.0
1,236,259 - ABZR87_RS21640 0.44 -0.7
1,236,259 - ABZR87_RS21640 0.44 -2.7
1,236,301 - ABZR87_RS21640 0.47 -0.2
1,236,301 - ABZR87_RS21640 0.47 +0.8
1,236,435 + ABZR87_RS21640 0.54 -0.4
1,236,457 - ABZR87_RS21640 0.56 -0.8

Or see this region's nucleotide sequence