Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21610

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21600 and ABZR87_RS21605 are separated by 0 nucleotidesABZR87_RS21605 and ABZR87_RS21610 overlap by 38 nucleotidesABZR87_RS21610 and ABZR87_RS21615 overlap by 4 nucleotidesABZR87_RS21615 and ABZR87_RS21620 are separated by 233 nucleotides ABZR87_RS21600: ABZR87_RS21600 - NAD(P)-dependent oxidoreductase, at 1,227,299 to 1,227,910 _RS21600 ABZR87_RS21605: ABZR87_RS21605 - hypothetical protein, at 1,227,911 to 1,228,519 _RS21605 ABZR87_RS21610: ABZR87_RS21610 - ATP-binding protein, at 1,228,482 to 1,229,969 _RS21610 ABZR87_RS21615: ABZR87_RS21615 - response regulator, at 1,229,966 to 1,230,643 _RS21615 ABZR87_RS21620: ABZR87_RS21620 - Nramp family divalent metal transporter, at 1,230,877 to 1,232,196 _RS21620 Position (kb) 1228 1229 1230Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1227.497 kb on + strand, within ABZR87_RS21600at 1227.497 kb on + strand, within ABZR87_RS21600at 1227.498 kb on - strand, within ABZR87_RS21600at 1227.498 kb on - strand, within ABZR87_RS21600at 1227.653 kb on + strand, within ABZR87_RS21600at 1227.654 kb on - strand, within ABZR87_RS21600at 1227.654 kb on - strand, within ABZR87_RS21600at 1227.654 kb on - strand, within ABZR87_RS21600at 1227.763 kb on + strand, within ABZR87_RS21600at 1227.990 kb on + strand, within ABZR87_RS21605at 1227.991 kb on - strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.238 kb on - strand, within ABZR87_RS21605at 1228.238 kb on - strand, within ABZR87_RS21605at 1228.238 kb on - strand, within ABZR87_RS21605at 1228.646 kb on + strand, within ABZR87_RS21610at 1228.706 kb on - strand, within ABZR87_RS21610at 1228.706 kb on - strand, within ABZR87_RS21610at 1228.848 kb on + strand, within ABZR87_RS21610at 1228.849 kb on - strand, within ABZR87_RS21610at 1228.930 kb on + strand, within ABZR87_RS21610at 1229.167 kb on + strand, within ABZR87_RS21610at 1229.167 kb on + strand, within ABZR87_RS21610at 1229.167 kb on + strand, within ABZR87_RS21610at 1229.167 kb on + strand, within ABZR87_RS21610at 1229.168 kb on - strand, within ABZR87_RS21610at 1229.168 kb on - strand, within ABZR87_RS21610at 1229.168 kb on - strand, within ABZR87_RS21610at 1229.488 kb on + strand, within ABZR87_RS21610at 1229.488 kb on + strand, within ABZR87_RS21610at 1229.488 kb on + strand, within ABZR87_RS21610at 1229.489 kb on - strand, within ABZR87_RS21610at 1229.549 kb on - strand, within ABZR87_RS21610at 1229.549 kb on - strand, within ABZR87_RS21610at 1229.549 kb on - strand, within ABZR87_RS21610at 1229.549 kb on - strand, within ABZR87_RS21610at 1229.549 kb on - strand, within ABZR87_RS21610at 1229.671 kb on + strand, within ABZR87_RS21610at 1229.672 kb on - strand, within ABZR87_RS21610at 1229.791 kb on + strand, within ABZR87_RS21610at 1229.791 kb on + strand, within ABZR87_RS21610at 1229.792 kb on - strand, within ABZR87_RS21610at 1229.914 kb on + strandat 1229.915 kb on - strandat 1229.915 kb on - strandat 1229.915 kb on - strandat 1229.915 kb on - strandat 1230.000 kb on + strandat 1230.000 kb on + strandat 1230.001 kb on - strandat 1230.106 kb on - strand, within ABZR87_RS21615at 1230.106 kb on - strand, within ABZR87_RS21615at 1230.178 kb on - strand, within ABZR87_RS21615at 1230.460 kb on + strand, within ABZR87_RS21615at 1230.460 kb on + strand, within ABZR87_RS21615at 1230.460 kb on + strand, within ABZR87_RS21615at 1230.460 kb on + strand, within ABZR87_RS21615at 1230.460 kb on + strand, within ABZR87_RS21615at 1230.461 kb on - strand, within ABZR87_RS21615at 1230.461 kb on - strand, within ABZR87_RS21615at 1230.461 kb on - strand, within ABZR87_RS21615at 1230.461 kb on - strand, within ABZR87_RS21615at 1230.567 kb on + strand, within ABZR87_RS21615

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,227,497 + ABZR87_RS21600 0.32 +0.6
1,227,497 + ABZR87_RS21600 0.32 +2.1
1,227,498 - ABZR87_RS21600 0.33 +0.8
1,227,498 - ABZR87_RS21600 0.33 -0.4
1,227,653 + ABZR87_RS21600 0.58 -0.1
1,227,654 - ABZR87_RS21600 0.58 -0.9
1,227,654 - ABZR87_RS21600 0.58 -0.0
1,227,654 - ABZR87_RS21600 0.58 -0.5
1,227,763 + ABZR87_RS21600 0.76 +0.7
1,227,990 + ABZR87_RS21605 0.13 -0.1
1,227,991 - ABZR87_RS21605 0.13 +0.3
1,228,237 + ABZR87_RS21605 0.54 -0.5
1,228,237 + ABZR87_RS21605 0.54 -0.5
1,228,237 + ABZR87_RS21605 0.54 +0.5
1,228,237 + ABZR87_RS21605 0.54 -0.2
1,228,237 + ABZR87_RS21605 0.54 +0.7
1,228,237 + ABZR87_RS21605 0.54 +0.4
1,228,237 + ABZR87_RS21605 0.54 +0.4
1,228,238 - ABZR87_RS21605 0.54 +0.2
1,228,238 - ABZR87_RS21605 0.54 +0.2
1,228,238 - ABZR87_RS21605 0.54 +1.0
1,228,646 + ABZR87_RS21610 0.11 -1.6
1,228,706 - ABZR87_RS21610 0.15 -1.0
1,228,706 - ABZR87_RS21610 0.15 -1.0
1,228,848 + ABZR87_RS21610 0.25 +0.7
1,228,849 - ABZR87_RS21610 0.25 -1.7
1,228,930 + ABZR87_RS21610 0.30 -1.3
1,229,167 + ABZR87_RS21610 0.46 -0.4
1,229,167 + ABZR87_RS21610 0.46 +1.3
1,229,167 + ABZR87_RS21610 0.46 +0.4
1,229,167 + ABZR87_RS21610 0.46 -0.6
1,229,168 - ABZR87_RS21610 0.46 -0.6
1,229,168 - ABZR87_RS21610 0.46 +0.0
1,229,168 - ABZR87_RS21610 0.46 +1.0
1,229,488 + ABZR87_RS21610 0.68 -0.1
1,229,488 + ABZR87_RS21610 0.68 +0.3
1,229,488 + ABZR87_RS21610 0.68 +0.7
1,229,489 - ABZR87_RS21610 0.68 -0.9
1,229,549 - ABZR87_RS21610 0.72 +0.7
1,229,549 - ABZR87_RS21610 0.72 +4.4
1,229,549 - ABZR87_RS21610 0.72 +6.0
1,229,549 - ABZR87_RS21610 0.72 +0.8
1,229,549 - ABZR87_RS21610 0.72 -1.4
1,229,671 + ABZR87_RS21610 0.80 -1.4
1,229,672 - ABZR87_RS21610 0.80 +4.3
1,229,791 + ABZR87_RS21610 0.88 +0.3
1,229,791 + ABZR87_RS21610 0.88 +0.8
1,229,792 - ABZR87_RS21610 0.88 -1.1
1,229,914 + -0.4
1,229,915 - +1.3
1,229,915 - -1.1
1,229,915 - +0.4
1,229,915 - -0.8
1,230,000 + -0.1
1,230,000 + +0.7
1,230,001 - -0.3
1,230,106 - ABZR87_RS21615 0.21 -0.7
1,230,106 - ABZR87_RS21615 0.21 +0.4
1,230,178 - ABZR87_RS21615 0.31 -0.0
1,230,460 + ABZR87_RS21615 0.73 -0.1
1,230,460 + ABZR87_RS21615 0.73 +0.3
1,230,460 + ABZR87_RS21615 0.73 +2.4
1,230,460 + ABZR87_RS21615 0.73 -0.6
1,230,460 + ABZR87_RS21615 0.73 +0.6
1,230,461 - ABZR87_RS21615 0.73 -0.6
1,230,461 - ABZR87_RS21615 0.73 -0.8
1,230,461 - ABZR87_RS21615 0.73 +0.7
1,230,461 - ABZR87_RS21615 0.73 -1.9
1,230,567 + ABZR87_RS21615 0.89 -1.1

Or see this region's nucleotide sequence