Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19825 and ABZR87_RS19830 are separated by 141 nucleotides ABZR87_RS19830 and ABZR87_RS19835 are separated by 69 nucleotides
ABZR87_RS19825: ABZR87_RS19825 - sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein, at 820,291 to 822,174
_RS19825
ABZR87_RS19830: ABZR87_RS19830 - porin, at 822,316 to 823,380
_RS19830
ABZR87_RS19835: ABZR87_RS19835 - D-amino acid dehydrogenase, at 823,450 to 824,703
_RS19835
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 821.417 kb on + strand, within ABZR87_RS19825 at 821.417 kb on + strand, within ABZR87_RS19825 at 821.418 kb on - strand, within ABZR87_RS19825 at 821.418 kb on - strand, within ABZR87_RS19825 at 821.418 kb on - strand, within ABZR87_RS19825 at 821.500 kb on + strand, within ABZR87_RS19825 at 821.501 kb on - strand, within ABZR87_RS19825 at 821.501 kb on - strand, within ABZR87_RS19825 at 821.536 kb on + strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.653 kb on + strand, within ABZR87_RS19825 at 821.654 kb on - strand, within ABZR87_RS19825 at 821.788 kb on - strand, within ABZR87_RS19825 at 821.788 kb on - strand, within ABZR87_RS19825 at 821.816 kb on - strand, within ABZR87_RS19825 at 821.923 kb on + strand, within ABZR87_RS19825 at 821.923 kb on + strand, within ABZR87_RS19825 at 821.924 kb on - strand, within ABZR87_RS19825 at 821.924 kb on - strand, within ABZR87_RS19825 at 821.927 kb on - strand, within ABZR87_RS19825 at 821.927 kb on - strand, within ABZR87_RS19825 at 821.927 kb on - strand, within ABZR87_RS19825 at 822.034 kb on + strand at 822.034 kb on + strand at 822.034 kb on + strand at 822.034 kb on + strand at 822.035 kb on - strand at 822.035 kb on - strand at 822.097 kb on + strand at 822.098 kb on - strand at 822.098 kb on - strand at 822.291 kb on - strand at 822.400 kb on + strand at 822.400 kb on + strand at 822.428 kb on - strand, within ABZR87_RS19830 at 822.428 kb on - strand, within ABZR87_RS19830 at 822.534 kb on + strand, within ABZR87_RS19830 at 822.535 kb on - strand, within ABZR87_RS19830 at 822.535 kb on - strand, within ABZR87_RS19830 at 822.549 kb on + strand, within ABZR87_RS19830 at 822.549 kb on + strand, within ABZR87_RS19830 at 822.644 kb on - strand, within ABZR87_RS19830 at 822.655 kb on + strand, within ABZR87_RS19830 at 822.655 kb on + strand, within ABZR87_RS19830 at 822.670 kb on + strand, within ABZR87_RS19830 at 822.670 kb on + strand, within ABZR87_RS19830 at 822.700 kb on + strand, within ABZR87_RS19830 at 822.700 kb on + strand, within ABZR87_RS19830 at 822.701 kb on - strand, within ABZR87_RS19830 at 822.724 kb on - strand, within ABZR87_RS19830 at 822.724 kb on - strand, within ABZR87_RS19830 at 822.754 kb on + strand, within ABZR87_RS19830 at 822.754 kb on + strand, within ABZR87_RS19830 at 822.754 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.788 kb on - strand, within ABZR87_RS19830 at 822.889 kb on + strand, within ABZR87_RS19830 at 822.889 kb on + strand, within ABZR87_RS19830 at 822.889 kb on + strand, within ABZR87_RS19830 at 822.890 kb on - strand, within ABZR87_RS19830 at 822.890 kb on - strand, within ABZR87_RS19830 at 822.923 kb on - strand, within ABZR87_RS19830 at 822.923 kb on - strand, within ABZR87_RS19830 at 823.020 kb on + strand, within ABZR87_RS19830 at 823.020 kb on + strand, within ABZR87_RS19830 at 823.021 kb on - strand, within ABZR87_RS19830 at 823.039 kb on + strand, within ABZR87_RS19830 at 823.040 kb on - strand, within ABZR87_RS19830 at 823.050 kb on + strand, within ABZR87_RS19830 at 823.050 kb on + strand, within ABZR87_RS19830 at 823.051 kb on - strand, within ABZR87_RS19830 at 823.051 kb on - strand, within ABZR87_RS19830 at 823.078 kb on + strand, within ABZR87_RS19830 at 823.079 kb on - strand, within ABZR87_RS19830 at 823.079 kb on - strand, within ABZR87_RS19830 at 823.096 kb on + strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.216 kb on + strand, within ABZR87_RS19830 at 823.216 kb on + strand, within ABZR87_RS19830 at 823.217 kb on - strand, within ABZR87_RS19830 at 823.258 kb on + strand, within ABZR87_RS19830 at 823.258 kb on + strand, within ABZR87_RS19830 at 823.258 kb on + strand, within ABZR87_RS19830 at 823.259 kb on - strand, within ABZR87_RS19830 at 823.327 kb on + strand at 823.327 kb on + strand at 823.328 kb on - strand at 823.328 kb on - strand at 823.328 kb on - strand at 823.544 kb on + strand at 823.544 kb on + strand at 823.544 kb on + strand at 823.545 kb on - strand at 823.545 kb on - strand at 823.545 kb on - strand at 823.706 kb on + strand, within ABZR87_RS19835 at 823.850 kb on + strand, within ABZR87_RS19835 at 823.866 kb on - strand, within ABZR87_RS19835 at 823.866 kb on - strand, within ABZR87_RS19835 at 823.899 kb on + strand, within ABZR87_RS19835 at 823.954 kb on + strand, within ABZR87_RS19835 at 823.955 kb on - strand, within ABZR87_RS19835 at 823.955 kb on - strand, within ABZR87_RS19835 at 824.061 kb on + strand, within ABZR87_RS19835 at 824.061 kb on + strand, within ABZR87_RS19835 at 824.147 kb on + strand, within ABZR87_RS19835 at 824.147 kb on + strand, within ABZR87_RS19835 at 824.148 kb on - strand, within ABZR87_RS19835 at 824.156 kb on + strand, within ABZR87_RS19835 at 824.156 kb on + strand, within ABZR87_RS19835 at 824.157 kb on - strand, within ABZR87_RS19835 at 824.159 kb on + strand, within ABZR87_RS19835 at 824.159 kb on + strand, within ABZR87_RS19835 at 824.159 kb on + strand, within ABZR87_RS19835 at 824.159 kb on + strand, within ABZR87_RS19835 at 824.159 kb on + strand, within ABZR87_RS19835 at 824.160 kb on - strand, within ABZR87_RS19835 at 824.160 kb on - strand, within ABZR87_RS19835 at 824.160 kb on - strand, within ABZR87_RS19835 at 824.285 kb on + strand, within ABZR87_RS19835 at 824.285 kb on + strand, within ABZR87_RS19835 at 824.285 kb on + strand, within ABZR87_RS19835 at 824.286 kb on - strand, within ABZR87_RS19835 at 824.286 kb on - strand, within ABZR87_RS19835 at 824.286 kb on - strand, within ABZR87_RS19835 at 824.286 kb on - strand, within ABZR87_RS19835
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 821,417 + ABZR87_RS19825 0.60 +1.9 821,417 + ABZR87_RS19825 0.60 +1.6 821,418 - ABZR87_RS19825 0.60 +0.3 821,418 - ABZR87_RS19825 0.60 +1.0 821,418 - ABZR87_RS19825 0.60 +0.9 821,500 + ABZR87_RS19825 0.64 -1.2 821,501 - ABZR87_RS19825 0.64 -0.2 821,501 - ABZR87_RS19825 0.64 -0.2 821,536 + ABZR87_RS19825 0.66 -0.7 821,537 - ABZR87_RS19825 0.66 +0.6 821,537 - ABZR87_RS19825 0.66 -1.0 821,537 - ABZR87_RS19825 0.66 -0.6 821,537 - ABZR87_RS19825 0.66 +0.3 821,653 + ABZR87_RS19825 0.72 -0.4 821,654 - ABZR87_RS19825 0.72 -1.8 821,788 - ABZR87_RS19825 0.79 -1.4 821,788 - ABZR87_RS19825 0.79 -1.0 821,816 - ABZR87_RS19825 0.81 +0.2 821,923 + ABZR87_RS19825 0.87 +0.2 821,923 + ABZR87_RS19825 0.87 +0.2 821,924 - ABZR87_RS19825 0.87 +1.2 821,924 - ABZR87_RS19825 0.87 -2.7 821,927 - ABZR87_RS19825 0.87 -0.7 821,927 - ABZR87_RS19825 0.87 +6.2 821,927 - ABZR87_RS19825 0.87 +0.9 822,034 + +0.1 822,034 + +0.3 822,034 + +2.1 822,034 + -0.1 822,035 - -0.7 822,035 - +0.2 822,097 + +0.1 822,098 - -1.2 822,098 - +0.4 822,291 - +0.2 822,400 + -1.6 822,400 + +0.1 822,428 - ABZR87_RS19830 0.11 -1.2 822,428 - ABZR87_RS19830 0.11 -0.7 822,534 + ABZR87_RS19830 0.20 +0.3 822,535 - ABZR87_RS19830 0.21 -0.6 822,535 - ABZR87_RS19830 0.21 -0.8 822,549 + ABZR87_RS19830 0.22 -0.0 822,549 + ABZR87_RS19830 0.22 +0.3 822,644 - ABZR87_RS19830 0.31 +1.1 822,655 + ABZR87_RS19830 0.32 +3.0 822,655 + ABZR87_RS19830 0.32 -0.7 822,670 + ABZR87_RS19830 0.33 +0.2 822,670 + ABZR87_RS19830 0.33 +0.0 822,700 + ABZR87_RS19830 0.36 +2.5 822,700 + ABZR87_RS19830 0.36 -0.8 822,701 - ABZR87_RS19830 0.36 -1.4 822,724 - ABZR87_RS19830 0.38 -0.5 822,724 - ABZR87_RS19830 0.38 -0.0 822,754 + ABZR87_RS19830 0.41 -0.5 822,754 + ABZR87_RS19830 0.41 +0.4 822,754 + ABZR87_RS19830 0.41 +0.1 822,787 + ABZR87_RS19830 0.44 -0.6 822,787 + ABZR87_RS19830 0.44 +1.5 822,787 + ABZR87_RS19830 0.44 +1.3 822,787 + ABZR87_RS19830 0.44 +0.6 822,788 - ABZR87_RS19830 0.44 +0.0 822,889 + ABZR87_RS19830 0.54 +0.8 822,889 + ABZR87_RS19830 0.54 +1.9 822,889 + ABZR87_RS19830 0.54 +0.2 822,890 - ABZR87_RS19830 0.54 +0.0 822,890 - ABZR87_RS19830 0.54 -0.9 822,923 - ABZR87_RS19830 0.57 -0.7 822,923 - ABZR87_RS19830 0.57 -0.4 823,020 + ABZR87_RS19830 0.66 +0.2 823,020 + ABZR87_RS19830 0.66 -0.7 823,021 - ABZR87_RS19830 0.66 +1.0 823,039 + ABZR87_RS19830 0.68 -0.5 823,040 - ABZR87_RS19830 0.68 -2.4 823,050 + ABZR87_RS19830 0.69 -0.2 823,050 + ABZR87_RS19830 0.69 +1.4 823,051 - ABZR87_RS19830 0.69 +0.1 823,051 - ABZR87_RS19830 0.69 +3.5 823,078 + ABZR87_RS19830 0.72 +1.0 823,079 - ABZR87_RS19830 0.72 -0.2 823,079 - ABZR87_RS19830 0.72 -2.3 823,096 + ABZR87_RS19830 0.73 +0.0 823,097 - ABZR87_RS19830 0.73 -0.7 823,097 - ABZR87_RS19830 0.73 +0.6 823,097 - ABZR87_RS19830 0.73 +2.4 823,097 - ABZR87_RS19830 0.73 -1.7 823,097 - ABZR87_RS19830 0.73 -0.8 823,097 - ABZR87_RS19830 0.73 -0.1 823,097 - ABZR87_RS19830 0.73 -0.5 823,216 + ABZR87_RS19830 0.85 +0.9 823,216 + ABZR87_RS19830 0.85 +3.9 823,217 - ABZR87_RS19830 0.85 +1.0 823,258 + ABZR87_RS19830 0.88 -1.7 823,258 + ABZR87_RS19830 0.88 -2.3 823,258 + ABZR87_RS19830 0.88 -0.2 823,259 - ABZR87_RS19830 0.89 -0.4 823,327 + -0.1 823,327 + +0.6 823,328 - +1.0 823,328 - -0.5 823,328 - -1.6 823,544 + -0.6 823,544 + +1.2 823,544 + -0.2 823,545 - -0.5 823,545 - -0.1 823,545 - -0.6 823,706 + ABZR87_RS19835 0.20 -1.9 823,850 + ABZR87_RS19835 0.32 -0.8 823,866 - ABZR87_RS19835 0.33 -1.3 823,866 - ABZR87_RS19835 0.33 +0.3 823,899 + ABZR87_RS19835 0.36 -0.6 823,954 + ABZR87_RS19835 0.40 -0.1 823,955 - ABZR87_RS19835 0.40 -0.3 823,955 - ABZR87_RS19835 0.40 +0.9 824,061 + ABZR87_RS19835 0.49 -0.1 824,061 + ABZR87_RS19835 0.49 +3.9 824,147 + ABZR87_RS19835 0.56 +0.5 824,147 + ABZR87_RS19835 0.56 +3.6 824,148 - ABZR87_RS19835 0.56 -0.3 824,156 + ABZR87_RS19835 0.56 +2.2 824,156 + ABZR87_RS19835 0.56 +0.0 824,157 - ABZR87_RS19835 0.56 -0.2 824,159 + ABZR87_RS19835 0.57 +3.0 824,159 + ABZR87_RS19835 0.57 +0.2 824,159 + ABZR87_RS19835 0.57 -1.7 824,159 + ABZR87_RS19835 0.57 -0.4 824,159 + ABZR87_RS19835 0.57 +0.2 824,160 - ABZR87_RS19835 0.57 -0.5 824,160 - ABZR87_RS19835 0.57 +2.6 824,160 - ABZR87_RS19835 0.57 +1.6 824,285 + ABZR87_RS19835 0.67 +0.4 824,285 + ABZR87_RS19835 0.67 -0.1 824,285 + ABZR87_RS19835 0.67 -0.1 824,286 - ABZR87_RS19835 0.67 +2.5 824,286 - ABZR87_RS19835 0.67 +0.1 824,286 - ABZR87_RS19835 0.67 -2.0 824,286 - ABZR87_RS19835 0.67 -1.2
Or see this region's nucleotide sequence