Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19220

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19215 and ABZR87_RS19220 are separated by 122 nucleotidesABZR87_RS19220 and ABZR87_RS19225 are separated by 66 nucleotidesABZR87_RS19225 and ABZR87_RS19230 are separated by 7 nucleotides ABZR87_RS19215: ABZR87_RS19215 - EAL domain-containing protein, at 673,175 to 675,925 _RS19215 ABZR87_RS19220: ABZR87_RS19220 - DUF6622 family protein, at 676,048 to 676,551 _RS19220 ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430 _RS19225 ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935 _RS19230 Position (kb) 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 675.050 kb on + strand, within ABZR87_RS19215at 675.090 kb on - strand, within ABZR87_RS19215at 675.125 kb on + strand, within ABZR87_RS19215at 675.125 kb on + strand, within ABZR87_RS19215at 675.125 kb on + strand, within ABZR87_RS19215at 675.125 kb on + strand, within ABZR87_RS19215at 675.126 kb on - strand, within ABZR87_RS19215at 675.126 kb on - strand, within ABZR87_RS19215at 675.182 kb on + strand, within ABZR87_RS19215at 675.183 kb on - strand, within ABZR87_RS19215at 675.194 kb on + strand, within ABZR87_RS19215at 675.195 kb on - strand, within ABZR87_RS19215at 675.195 kb on - strand, within ABZR87_RS19215at 675.369 kb on - strand, within ABZR87_RS19215at 675.608 kb on + strand, within ABZR87_RS19215at 675.623 kb on + strand, within ABZR87_RS19215at 675.623 kb on + strand, within ABZR87_RS19215at 675.624 kb on - strand, within ABZR87_RS19215at 675.830 kb on + strandat 675.830 kb on + strandat 675.831 kb on - strandat 675.831 kb on - strandat 675.831 kb on - strandat 675.831 kb on - strandat 675.831 kb on - strandat 676.016 kb on + strandat 676.016 kb on + strandat 676.016 kb on + strandat 676.016 kb on + strandat 676.017 kb on - strandat 676.017 kb on - strandat 676.062 kb on + strandat 676.063 kb on - strandat 676.063 kb on - strandat 676.063 kb on - strandat 676.063 kb on - strandat 676.081 kb on - strandat 676.081 kb on - strandat 676.081 kb on - strandat 676.207 kb on + strand, within ABZR87_RS19220at 676.207 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.291 kb on + strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.292 kb on - strand, within ABZR87_RS19220at 676.337 kb on + strand, within ABZR87_RS19220at 676.337 kb on + strand, within ABZR87_RS19220at 676.396 kb on + strand, within ABZR87_RS19220at 676.402 kb on + strand, within ABZR87_RS19220at 676.402 kb on + strand, within ABZR87_RS19220at 676.528 kb on - strandat 676.753 kb on + strand, within ABZR87_RS19225at 676.753 kb on + strand, within ABZR87_RS19225at 676.753 kb on + strand, within ABZR87_RS19225at 676.754 kb on - strand, within ABZR87_RS19225at 676.754 kb on - strand, within ABZR87_RS19225at 677.004 kb on + strand, within ABZR87_RS19225at 677.004 kb on + strand, within ABZR87_RS19225at 677.004 kb on + strand, within ABZR87_RS19225at 677.004 kb on + strand, within ABZR87_RS19225at 677.005 kb on - strand, within ABZR87_RS19225at 677.005 kb on - strand, within ABZR87_RS19225at 677.242 kb on + strand, within ABZR87_RS19225at 677.466 kb on - strandat 677.466 kb on - strandat 677.466 kb on - strandat 677.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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675,050 + ABZR87_RS19215 0.68 -1.2
675,090 - ABZR87_RS19215 0.70 -1.7
675,125 + ABZR87_RS19215 0.71 +0.7
675,125 + ABZR87_RS19215 0.71 -0.9
675,125 + ABZR87_RS19215 0.71 -0.3
675,125 + ABZR87_RS19215 0.71 +0.1
675,126 - ABZR87_RS19215 0.71 +0.0
675,126 - ABZR87_RS19215 0.71 -0.6
675,182 + ABZR87_RS19215 0.73 -0.5
675,183 - ABZR87_RS19215 0.73 -0.1
675,194 + ABZR87_RS19215 0.73 +2.2
675,195 - ABZR87_RS19215 0.73 +0.1
675,195 - ABZR87_RS19215 0.73 -1.8
675,369 - ABZR87_RS19215 0.80 -1.0
675,608 + ABZR87_RS19215 0.88 -1.3
675,623 + ABZR87_RS19215 0.89 -1.3
675,623 + ABZR87_RS19215 0.89 -0.6
675,624 - ABZR87_RS19215 0.89 +0.6
675,830 + -0.6
675,830 + -2.8
675,831 - -0.2
675,831 - +0.7
675,831 - -0.7
675,831 - +0.1
675,831 - -2.0
676,016 + -0.7
676,016 + +0.1
676,016 + -0.4
676,016 + +1.4
676,017 - +0.4
676,017 - +1.9
676,062 + -0.4
676,063 - +0.0
676,063 - +0.2
676,063 - +0.0
676,063 - -0.5
676,081 - -0.5
676,081 - -0.8
676,081 - -2.7
676,207 + ABZR87_RS19220 0.32 +0.1
676,207 + ABZR87_RS19220 0.32 +0.6
676,291 + ABZR87_RS19220 0.48 -0.7
676,291 + ABZR87_RS19220 0.48 -0.6
676,291 + ABZR87_RS19220 0.48 -1.8
676,291 + ABZR87_RS19220 0.48 -1.5
676,291 + ABZR87_RS19220 0.48 -0.5
676,291 + ABZR87_RS19220 0.48 -0.5
676,291 + ABZR87_RS19220 0.48 -1.6
676,292 - ABZR87_RS19220 0.48 -0.2
676,292 - ABZR87_RS19220 0.48 -2.3
676,292 - ABZR87_RS19220 0.48 -0.2
676,292 - ABZR87_RS19220 0.48 +1.3
676,292 - ABZR87_RS19220 0.48 -0.9
676,292 - ABZR87_RS19220 0.48 +1.0
676,292 - ABZR87_RS19220 0.48 -0.1
676,292 - ABZR87_RS19220 0.48 -1.4
676,292 - ABZR87_RS19220 0.48 +0.3
676,337 + ABZR87_RS19220 0.57 +0.8
676,337 + ABZR87_RS19220 0.57 +0.7
676,396 + ABZR87_RS19220 0.69 -0.5
676,402 + ABZR87_RS19220 0.70 +1.3
676,402 + ABZR87_RS19220 0.70 -0.8
676,528 - -1.0
676,753 + ABZR87_RS19225 0.17 -0.0
676,753 + ABZR87_RS19225 0.17 +0.0
676,753 + ABZR87_RS19225 0.17 -0.1
676,754 - ABZR87_RS19225 0.17 +0.2
676,754 - ABZR87_RS19225 0.17 -0.7
677,004 + ABZR87_RS19225 0.47 -0.4
677,004 + ABZR87_RS19225 0.47 -1.8
677,004 + ABZR87_RS19225 0.47 +0.2
677,004 + ABZR87_RS19225 0.47 -0.7
677,005 - ABZR87_RS19225 0.48 -0.7
677,005 - ABZR87_RS19225 0.48 -0.5
677,242 + ABZR87_RS19225 0.77 +0.8
677,466 - +1.6
677,466 - -0.1
677,466 - +0.9
677,466 - +0.7

Or see this region's nucleotide sequence