Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18435 and ABZR87_RS18440 overlap by 4 nucleotides ABZR87_RS18440 and ABZR87_RS18445 are separated by 8 nucleotides ABZR87_RS18445 and ABZR87_RS18450 overlap by 1 nucleotides ABZR87_RS18450 and ABZR87_RS18455 overlap by 8 nucleotides ABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotides
ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569
_RS18435
ABZR87_RS18440: ABZR87_RS18440 - VOC family protein, at 498,566 to 498,958
_RS18440
ABZR87_RS18445: ABZR87_RS18445 - MaoC family dehydratase, at 498,967 to 499,425
_RS18445
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477
_RS18455
ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944
_RS18460
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 498.584 kb on + strand at 498.585 kb on - strand at 498.701 kb on + strand, within ABZR87_RS18440 at 498.702 kb on - strand, within ABZR87_RS18440 at 498.853 kb on + strand, within ABZR87_RS18440 at 498.854 kb on - strand, within ABZR87_RS18440 at 499.030 kb on + strand, within ABZR87_RS18445 at 499.031 kb on - strand, within ABZR87_RS18445 at 499.060 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.464 kb on + strand at 499.489 kb on - strand at 499.489 kb on - strand at 499.603 kb on - strand, within ABZR87_RS18450 at 499.716 kb on + strand, within ABZR87_RS18450 at 499.717 kb on - strand, within ABZR87_RS18450 at 499.753 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.939 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.055 kb on + strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.071 kb on - strand, within ABZR87_RS18450 at 500.130 kb on + strand, within ABZR87_RS18450 at 500.131 kb on - strand, within ABZR87_RS18450 at 500.626 kb on - strand at 500.626 kb on - strand at 500.657 kb on - strand at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 501.175 kb on + strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.305 kb on - strand, within ABZR87_RS18455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 498,584 + +2.2 498,585 - -0.9 498,701 + ABZR87_RS18440 0.34 -1.1 498,702 - ABZR87_RS18440 0.35 +0.9 498,853 + ABZR87_RS18440 0.73 -1.9 498,854 - ABZR87_RS18440 0.73 -0.6 499,030 + ABZR87_RS18445 0.14 -1.5 499,031 - ABZR87_RS18445 0.14 +0.9 499,060 + ABZR87_RS18445 0.20 +0.0 499,108 + ABZR87_RS18445 0.31 -3.1 499,108 + ABZR87_RS18445 0.31 -0.8 499,108 + ABZR87_RS18445 0.31 -1.8 499,464 + +3.2 499,489 - +0.1 499,489 - -0.6 499,603 - ABZR87_RS18450 0.15 +3.2 499,716 + ABZR87_RS18450 0.24 -0.5 499,717 - ABZR87_RS18450 0.24 -0.8 499,753 - ABZR87_RS18450 0.27 +0.1 499,789 - ABZR87_RS18450 0.30 -0.3 499,789 - ABZR87_RS18450 0.30 -1.1 499,938 + ABZR87_RS18450 0.42 -0.6 499,938 + ABZR87_RS18450 0.42 -0.2 499,938 + ABZR87_RS18450 0.42 -1.0 499,938 + ABZR87_RS18450 0.42 +0.1 499,939 - ABZR87_RS18450 0.42 -0.4 500,029 - ABZR87_RS18450 0.49 -1.0 500,029 - ABZR87_RS18450 0.49 +1.0 500,055 + ABZR87_RS18450 0.51 -1.2 500,056 - ABZR87_RS18450 0.51 -0.3 500,056 - ABZR87_RS18450 0.51 -0.1 500,070 + ABZR87_RS18450 0.53 -0.8 500,070 + ABZR87_RS18450 0.53 +0.6 500,070 + ABZR87_RS18450 0.53 -0.1 500,071 - ABZR87_RS18450 0.53 +0.2 500,130 + ABZR87_RS18450 0.57 -2.9 500,131 - ABZR87_RS18450 0.58 +0.9 500,626 - -0.5 500,626 - -1.3 500,657 - -0.5 500,743 + ABZR87_RS18455 0.12 +0.0 500,743 + ABZR87_RS18455 0.12 +0.5 500,743 + ABZR87_RS18455 0.12 +1.7 500,744 - ABZR87_RS18455 0.12 -1.1 500,744 - ABZR87_RS18455 0.12 +0.4 501,175 + ABZR87_RS18455 0.64 -1.1 501,293 - ABZR87_RS18455 0.78 -0.3 501,293 - ABZR87_RS18455 0.78 -0.9 501,304 + ABZR87_RS18455 0.79 -1.5 501,304 + ABZR87_RS18455 0.79 -0.9 501,305 - ABZR87_RS18455 0.79 -1.1
Or see this region's nucleotide sequence