Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18225

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18220 and ABZR87_RS18225 are separated by 81 nucleotidesABZR87_RS18225 and ABZR87_RS18230 overlap by 4 nucleotides ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165 _RS18220 ABZR87_RS18225: ABZR87_RS18225 - D-xylose ABC transporter ATP-binding protein, at 459,247 to 460,830 _RS18225 ABZR87_RS18230: ABZR87_RS18230 - sugar ABC transporter permease, at 460,827 to 462,029 _RS18230 Position (kb) 459 460 461Strain fitness (log2 ratio) -2 -1 0 1 2 3at 458.303 kb on - strand, within ABZR87_RS18220at 458.501 kb on - strand, within ABZR87_RS18220at 458.501 kb on - strand, within ABZR87_RS18220at 458.536 kb on + strand, within ABZR87_RS18220at 458.536 kb on + strand, within ABZR87_RS18220at 458.536 kb on + strand, within ABZR87_RS18220at 458.587 kb on + strand, within ABZR87_RS18220at 458.587 kb on + strand, within ABZR87_RS18220at 458.588 kb on - strand, within ABZR87_RS18220at 458.612 kb on - strand, within ABZR87_RS18220at 458.612 kb on - strand, within ABZR87_RS18220at 458.956 kb on + strand, within ABZR87_RS18220at 458.956 kb on + strand, within ABZR87_RS18220at 458.957 kb on - strand, within ABZR87_RS18220at 459.031 kb on + strand, within ABZR87_RS18220at 459.032 kb on - strand, within ABZR87_RS18220at 459.043 kb on + strand, within ABZR87_RS18220at 459.137 kb on - strandat 459.230 kb on + strandat 459.230 kb on + strandat 459.316 kb on - strandat 459.591 kb on + strand, within ABZR87_RS18225at 459.591 kb on + strand, within ABZR87_RS18225at 459.591 kb on + strand, within ABZR87_RS18225at 459.598 kb on + strand, within ABZR87_RS18225at 459.599 kb on - strand, within ABZR87_RS18225at 459.610 kb on + strand, within ABZR87_RS18225at 459.610 kb on + strand, within ABZR87_RS18225at 459.610 kb on + strand, within ABZR87_RS18225at 459.611 kb on - strand, within ABZR87_RS18225at 459.611 kb on - strand, within ABZR87_RS18225at 459.611 kb on - strand, within ABZR87_RS18225at 459.682 kb on + strand, within ABZR87_RS18225at 459.683 kb on - strand, within ABZR87_RS18225at 459.844 kb on + strand, within ABZR87_RS18225at 459.844 kb on + strand, within ABZR87_RS18225at 459.844 kb on + strand, within ABZR87_RS18225at 459.844 kb on + strand, within ABZR87_RS18225at 459.844 kb on + strand, within ABZR87_RS18225at 460.055 kb on - strand, within ABZR87_RS18225at 460.186 kb on + strand, within ABZR87_RS18225at 460.577 kb on - strand, within ABZR87_RS18225at 460.585 kb on + strand, within ABZR87_RS18225at 460.586 kb on - strand, within ABZR87_RS18225at 460.586 kb on - strand, within ABZR87_RS18225at 460.586 kb on - strand, within ABZR87_RS18225at 460.608 kb on + strand, within ABZR87_RS18225at 460.609 kb on - strand, within ABZR87_RS18225at 460.881 kb on - strandat 460.923 kb on + strandat 461.152 kb on + strand, within ABZR87_RS18230at 461.371 kb on - strand, within ABZR87_RS18230at 461.371 kb on - strand, within ABZR87_RS18230at 461.554 kb on + strand, within ABZR87_RS18230at 461.556 kb on + strand, within ABZR87_RS18230at 461.557 kb on - strand, within ABZR87_RS18230at 461.557 kb on - strand, within ABZR87_RS18230at 461.557 kb on - strand, within ABZR87_RS18230at 461.645 kb on + strand, within ABZR87_RS18230at 461.646 kb on - strand, within ABZR87_RS18230at 461.649 kb on + strand, within ABZR87_RS18230at 461.649 kb on + strand, within ABZR87_RS18230at 461.649 kb on + strand, within ABZR87_RS18230

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
458,303 - ABZR87_RS18220 0.16 -0.1
458,501 - ABZR87_RS18220 0.35 -0.4
458,501 - ABZR87_RS18220 0.35 +1.4
458,536 + ABZR87_RS18220 0.39 +0.8
458,536 + ABZR87_RS18220 0.39 -1.5
458,536 + ABZR87_RS18220 0.39 -0.5
458,587 + ABZR87_RS18220 0.44 +0.5
458,587 + ABZR87_RS18220 0.44 -0.2
458,588 - ABZR87_RS18220 0.44 +2.5
458,612 - ABZR87_RS18220 0.46 +3.4
458,612 - ABZR87_RS18220 0.46 -1.4
458,956 + ABZR87_RS18220 0.80 -0.0
458,956 + ABZR87_RS18220 0.80 +0.3
458,957 - ABZR87_RS18220 0.80 +0.4
459,031 + ABZR87_RS18220 0.87 -0.6
459,032 - ABZR87_RS18220 0.87 +1.2
459,043 + ABZR87_RS18220 0.88 +0.9
459,137 - -2.6
459,230 + -1.2
459,230 + -0.6
459,316 - +0.7
459,591 + ABZR87_RS18225 0.22 -1.1
459,591 + ABZR87_RS18225 0.22 +0.5
459,591 + ABZR87_RS18225 0.22 -0.1
459,598 + ABZR87_RS18225 0.22 +1.7
459,599 - ABZR87_RS18225 0.22 -1.2
459,610 + ABZR87_RS18225 0.23 +1.3
459,610 + ABZR87_RS18225 0.23 +1.3
459,610 + ABZR87_RS18225 0.23 +1.3
459,611 - ABZR87_RS18225 0.23 +0.1
459,611 - ABZR87_RS18225 0.23 -0.9
459,611 - ABZR87_RS18225 0.23 +1.0
459,682 + ABZR87_RS18225 0.27 -0.8
459,683 - ABZR87_RS18225 0.28 +0.1
459,844 + ABZR87_RS18225 0.38 +1.8
459,844 + ABZR87_RS18225 0.38 -0.6
459,844 + ABZR87_RS18225 0.38 -1.2
459,844 + ABZR87_RS18225 0.38 -1.4
459,844 + ABZR87_RS18225 0.38 -0.0
460,055 - ABZR87_RS18225 0.51 +0.1
460,186 + ABZR87_RS18225 0.59 -1.0
460,577 - ABZR87_RS18225 0.84 +1.0
460,585 + ABZR87_RS18225 0.84 -1.1
460,586 - ABZR87_RS18225 0.85 -1.1
460,586 - ABZR87_RS18225 0.85 +0.8
460,586 - ABZR87_RS18225 0.85 -2.3
460,608 + ABZR87_RS18225 0.86 -0.3
460,609 - ABZR87_RS18225 0.86 -1.6
460,881 - +0.8
460,923 + -0.0
461,152 + ABZR87_RS18230 0.27 +3.5
461,371 - ABZR87_RS18230 0.45 +1.5
461,371 - ABZR87_RS18230 0.45 +0.5
461,554 + ABZR87_RS18230 0.60 -0.3
461,556 + ABZR87_RS18230 0.61 -0.5
461,557 - ABZR87_RS18230 0.61 +1.2
461,557 - ABZR87_RS18230 0.61 -1.9
461,557 - ABZR87_RS18230 0.61 +1.3
461,645 + ABZR87_RS18230 0.68 -0.0
461,646 - ABZR87_RS18230 0.68 +1.4
461,649 + ABZR87_RS18230 0.68 -0.5
461,649 + ABZR87_RS18230 0.68 -0.5
461,649 + ABZR87_RS18230 0.68 -1.0

Or see this region's nucleotide sequence