Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotides ABZR87_RS18215 and ABZR87_RS18220 are separated by 270 nucleotides
ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646
_RS18210
ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866
_RS18215
ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165
_RS18220
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 455.690 kb on + strand, within ABZR87_RS18210 at 455.690 kb on + strand, within ABZR87_RS18210 at 455.691 kb on - strand, within ABZR87_RS18210 at 455.691 kb on - strand, within ABZR87_RS18210 at 455.737 kb on - strand, within ABZR87_RS18210 at 455.796 kb on + strand, within ABZR87_RS18210 at 455.843 kb on - strand, within ABZR87_RS18210 at 456.124 kb on - strand, within ABZR87_RS18210 at 456.124 kb on - strand, within ABZR87_RS18210 at 456.257 kb on + strand, within ABZR87_RS18210 at 456.324 kb on + strand, within ABZR87_RS18210 at 456.324 kb on + strand, within ABZR87_RS18210 at 456.324 kb on + strand, within ABZR87_RS18210 at 456.325 kb on - strand, within ABZR87_RS18210 at 456.344 kb on - strand, within ABZR87_RS18210 at 456.415 kb on - strand, within ABZR87_RS18210 at 456.712 kb on + strand at 456.725 kb on + strand at 456.725 kb on + strand at 456.726 kb on - strand at 456.726 kb on - strand at 456.726 kb on - strand at 456.726 kb on - strand at 456.738 kb on + strand at 456.738 kb on + strand at 456.739 kb on - strand at 456.739 kb on - strand at 456.889 kb on - strand, within ABZR87_RS18215 at 456.968 kb on + strand, within ABZR87_RS18215 at 456.968 kb on + strand, within ABZR87_RS18215 at 456.969 kb on - strand, within ABZR87_RS18215 at 456.969 kb on - strand, within ABZR87_RS18215 at 456.969 kb on - strand, within ABZR87_RS18215 at 457.356 kb on - strand, within ABZR87_RS18215 at 457.408 kb on - strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.545 kb on - strand, within ABZR87_RS18215 at 457.545 kb on - strand, within ABZR87_RS18215 at 457.562 kb on + strand, within ABZR87_RS18215 at 457.563 kb on - strand, within ABZR87_RS18215 at 457.580 kb on + strand, within ABZR87_RS18215 at 457.581 kb on - strand, within ABZR87_RS18215 at 457.581 kb on - strand, within ABZR87_RS18215 at 457.754 kb on + strand at 457.755 kb on - strand at 457.787 kb on + strand at 457.788 kb on - strand at 457.788 kb on - strand at 457.903 kb on + strand at 457.945 kb on - strand at 457.998 kb on - strand at 458.019 kb on - strand at 458.079 kb on - strand at 458.303 kb on - strand, within ABZR87_RS18220 at 458.501 kb on - strand, within ABZR87_RS18220 at 458.501 kb on - strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.587 kb on + strand, within ABZR87_RS18220 at 458.587 kb on + strand, within ABZR87_RS18220 at 458.588 kb on - strand, within ABZR87_RS18220 at 458.612 kb on - strand, within ABZR87_RS18220 at 458.612 kb on - strand, within ABZR87_RS18220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 455,690 + ABZR87_RS18210 0.12 -1.4 455,690 + ABZR87_RS18210 0.12 -0.5 455,691 - ABZR87_RS18210 0.12 -0.2 455,691 - ABZR87_RS18210 0.12 +0.6 455,737 - ABZR87_RS18210 0.16 -0.4 455,796 + ABZR87_RS18210 0.21 +1.0 455,843 - ABZR87_RS18210 0.26 +0.6 456,124 - ABZR87_RS18210 0.52 +0.1 456,124 - ABZR87_RS18210 0.52 +6.0 456,257 + ABZR87_RS18210 0.64 -0.0 456,324 + ABZR87_RS18210 0.70 +0.3 456,324 + ABZR87_RS18210 0.70 +0.3 456,324 + ABZR87_RS18210 0.70 -1.2 456,325 - ABZR87_RS18210 0.70 +3.2 456,344 - ABZR87_RS18210 0.72 -0.5 456,415 - ABZR87_RS18210 0.79 -0.0 456,712 + -1.2 456,725 + -2.0 456,725 + -1.3 456,726 - +1.0 456,726 - -1.3 456,726 - +2.8 456,726 - +1.3 456,738 + -1.0 456,738 + -1.9 456,739 - -1.4 456,739 - -0.2 456,889 - ABZR87_RS18215 0.20 -0.5 456,968 + ABZR87_RS18215 0.27 +0.2 456,968 + ABZR87_RS18215 0.27 +2.1 456,969 - ABZR87_RS18215 0.27 +1.8 456,969 - ABZR87_RS18215 0.27 +0.1 456,969 - ABZR87_RS18215 0.27 +0.3 457,356 - ABZR87_RS18215 0.58 -3.4 457,408 - ABZR87_RS18215 0.62 -1.0 457,544 + ABZR87_RS18215 0.74 -0.1 457,544 + ABZR87_RS18215 0.74 +1.2 457,544 + ABZR87_RS18215 0.74 -1.0 457,544 + ABZR87_RS18215 0.74 +1.4 457,544 + ABZR87_RS18215 0.74 +3.2 457,545 - ABZR87_RS18215 0.74 -0.4 457,545 - ABZR87_RS18215 0.74 -0.3 457,562 + ABZR87_RS18215 0.75 -0.8 457,563 - ABZR87_RS18215 0.75 +0.6 457,580 + ABZR87_RS18215 0.77 +0.4 457,581 - ABZR87_RS18215 0.77 +0.6 457,581 - ABZR87_RS18215 0.77 -1.0 457,754 + -1.3 457,755 - -2.2 457,787 + +0.8 457,788 - +0.0 457,788 - +0.5 457,903 + -0.4 457,945 - +0.1 457,998 - -1.6 458,019 - -1.2 458,079 - +1.4 458,303 - ABZR87_RS18220 0.16 -0.1 458,501 - ABZR87_RS18220 0.35 -0.4 458,501 - ABZR87_RS18220 0.35 +1.4 458,536 + ABZR87_RS18220 0.39 +0.8 458,536 + ABZR87_RS18220 0.39 -1.5 458,536 + ABZR87_RS18220 0.39 -0.5 458,587 + ABZR87_RS18220 0.44 +0.5 458,587 + ABZR87_RS18220 0.44 -0.2 458,588 - ABZR87_RS18220 0.44 +2.5 458,612 - ABZR87_RS18220 0.46 +3.4 458,612 - ABZR87_RS18220 0.46 -1.4
Or see this region's nucleotide sequence