Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17750 and ABZR87_RS17755 are separated by 28 nucleotides ABZR87_RS17755 and ABZR87_RS17760 are separated by 73 nucleotides ABZR87_RS17760 and ABZR87_RS17765 are separated by 65 nucleotides
ABZR87_RS17750: ABZR87_RS17750 - transporter substrate-binding domain-containing protein, at 343,820 to 344,770
_RS17750
ABZR87_RS17755: ABZR87_RS17755 - methionine ABC transporter permease, at 344,799 to 345,443
_RS17755
ABZR87_RS17760: ABZR87_RS17760 - ATP-binding cassette domain-containing protein, at 345,517 to 346,248
_RS17760
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
Position (kb) 345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 344.561 kb on + strand, within ABZR87_RS17750 at 344.561 kb on + strand, within ABZR87_RS17750 at 344.915 kb on - strand, within ABZR87_RS17755 at 345.136 kb on - strand, within ABZR87_RS17755 at 345.272 kb on + strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.282 kb on + strand, within ABZR87_RS17755 at 345.377 kb on - strand, within ABZR87_RS17755 at 345.430 kb on + strand at 345.450 kb on - strand at 345.885 kb on + strand, within ABZR87_RS17760 at 345.886 kb on - strand, within ABZR87_RS17760 at 346.211 kb on + strand at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand at 346.451 kb on - strand, within ABZR87_RS17765 at 346.644 kb on - strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.787 kb on - strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.819 kb on - strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 347.105 kb on - strand at 347.163 kb on + strand at 347.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 344,561 + ABZR87_RS17750 0.78 -1.2 344,561 + ABZR87_RS17750 0.78 -1.2 344,915 - ABZR87_RS17755 0.18 -0.1 345,136 - ABZR87_RS17755 0.52 +0.6 345,272 + ABZR87_RS17755 0.73 +0.3 345,273 - ABZR87_RS17755 0.73 +3.2 345,273 - ABZR87_RS17755 0.73 -0.9 345,273 - ABZR87_RS17755 0.73 -1.4 345,282 + ABZR87_RS17755 0.75 +0.0 345,377 - ABZR87_RS17755 0.90 -0.6 345,430 + -0.2 345,450 - +3.2 345,885 + ABZR87_RS17760 0.50 -0.0 345,886 - ABZR87_RS17760 0.50 +1.0 346,211 + -1.4 346,343 - +0.0 346,381 + +0.5 346,382 - -0.2 346,451 - ABZR87_RS17765 0.17 -1.0 346,644 - ABZR87_RS17765 0.41 -0.2 346,774 + ABZR87_RS17765 0.57 -3.0 346,774 + ABZR87_RS17765 0.57 -0.2 346,787 - ABZR87_RS17765 0.58 +0.7 346,818 + ABZR87_RS17765 0.62 -0.3 346,818 + ABZR87_RS17765 0.62 -1.0 346,818 + ABZR87_RS17765 0.62 +0.1 346,819 - ABZR87_RS17765 0.62 -2.9 346,834 + ABZR87_RS17765 0.64 +0.3 346,834 + ABZR87_RS17765 0.64 -2.7 346,834 + ABZR87_RS17765 0.64 +0.2 347,105 - -1.3 347,163 + +1.2 347,205 - +0.4
Or see this region's nucleotide sequence