Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17690 and ABZR87_RS17695 are separated by 114 nucleotides ABZR87_RS17695 and ABZR87_RS17700 are separated by 17 nucleotides ABZR87_RS17700 and ABZR87_RS17705 are separated by 135 nucleotides ABZR87_RS17705 and ABZR87_RS17710 are separated by 29 nucleotides
ABZR87_RS17690: ABZR87_RS17690 - multidrug/biocide efflux PACE transporter, at 334,444 to 334,881
_RS17690
ABZR87_RS17695: ABZR87_RS17695 - helix-turn-helix transcriptional regulator, at 334,996 to 335,634
_RS17695
ABZR87_RS17700: ABZR87_RS17700 - DUF1059 domain-containing protein, at 335,652 to 335,870
_RS17700
ABZR87_RS17705: ABZR87_RS17705 - DUF3455 domain-containing protein, at 336,006 to 336,536
_RS17705
ABZR87_RS17710: ABZR87_RS17710 - DUF488 family protein, at 336,566 to 336,964
_RS17710
Position (kb) 335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.895 kb on + strand at 334.896 kb on - strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.935 kb on + strand at 334.935 kb on + strand at 334.936 kb on - strand at 334.936 kb on - strand at 334.986 kb on + strand at 334.987 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.285 kb on - strand, within ABZR87_RS17695 at 335.563 kb on + strand, within ABZR87_RS17695 at 335.632 kb on + strand at 335.632 kb on + strand at 335.857 kb on + strand at 335.858 kb on - strand at 335.940 kb on + strand at 335.942 kb on + strand at 335.973 kb on + strand at 335.974 kb on - strand at 335.974 kb on - strand at 336.072 kb on + strand, within ABZR87_RS17705 at 336.172 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.645 kb on + strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 334,810 + ABZR87_RS17690 0.84 -0.5 334,810 + ABZR87_RS17690 0.84 -0.8 334,834 + ABZR87_RS17690 0.89 +0.0 334,834 + ABZR87_RS17690 0.89 +0.8 334,835 - ABZR87_RS17690 0.89 +1.6 334,835 - ABZR87_RS17690 0.89 +0.3 334,895 + -0.7 334,896 - +1.4 334,933 + +0.4 334,933 + +0.4 334,933 + -0.5 334,934 - +0.9 334,934 - +0.8 334,934 - +0.1 334,934 - +1.7 334,934 - +0.2 334,934 - +1.7 334,934 - +1.8 334,935 + -0.1 334,935 + +0.4 334,936 - -0.4 334,936 - -2.4 334,986 + -0.5 334,987 - -0.2 335,014 - +0.6 335,014 - -0.8 335,014 - +0.2 335,053 + -0.0 335,053 + +1.4 335,053 + +0.4 335,053 + +0.7 335,053 + -0.1 335,054 - +2.0 335,054 - -0.3 335,054 - +0.6 335,054 - -0.6 335,054 - +0.6 335,285 - ABZR87_RS17695 0.45 -1.8 335,563 + ABZR87_RS17695 0.89 +1.3 335,632 + +0.0 335,632 + -0.2 335,857 + -2.4 335,858 - +2.1 335,940 + +0.4 335,942 + -0.8 335,973 + +0.7 335,974 - +0.5 335,974 - -1.3 336,072 + ABZR87_RS17705 0.12 +0.6 336,172 - ABZR87_RS17705 0.31 -1.2 336,302 - ABZR87_RS17705 0.56 +0.9 336,302 - ABZR87_RS17705 0.56 +0.6 336,302 - ABZR87_RS17705 0.56 -0.7 336,345 - ABZR87_RS17705 0.64 -1.2 336,345 - ABZR87_RS17705 0.64 +0.5 336,367 + ABZR87_RS17705 0.68 +0.2 336,367 + ABZR87_RS17705 0.68 +0.5 336,367 + ABZR87_RS17705 0.68 +0.6 336,367 + ABZR87_RS17705 0.68 +0.4 336,367 + ABZR87_RS17705 0.68 -1.2 336,367 + ABZR87_RS17705 0.68 -2.6 336,367 + ABZR87_RS17705 0.68 -0.8 336,368 - ABZR87_RS17705 0.68 +1.0 336,368 - ABZR87_RS17705 0.68 +1.1 336,645 + ABZR87_RS17710 0.20 -0.8 336,646 - ABZR87_RS17710 0.20 +1.7 336,646 - ABZR87_RS17710 0.20 +1.2 336,646 - ABZR87_RS17710 0.20 -1.6 336,844 - ABZR87_RS17710 0.70 -0.3 336,844 - ABZR87_RS17710 0.70 -0.2
Or see this region's nucleotide sequence