Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17610

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17605 and ABZR87_RS17610 overlap by 4 nucleotidesABZR87_RS17610 and ABZR87_RS17615 are separated by 79 nucleotidesABZR87_RS17615 and ABZR87_RS17620 are separated by 208 nucleotides ABZR87_RS17605: ABZR87_RS17605 - AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase, at 314,090 to 315,853 _RS17605 ABZR87_RS17610: ABZR87_RS17610 - SulP family inorganic anion transporter, at 315,850 to 317,619 _RS17610 ABZR87_RS17615: ABZR87_RS17615 - hypothetical protein, at 317,699 to 318,250 _RS17615 ABZR87_RS17620: ABZR87_RS17620 - LysR family transcriptional regulator, at 318,459 to 319,397 _RS17620 Position (kb) 315 316 317 318Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 315.070 kb on + strand, within ABZR87_RS17605at 315.260 kb on - strand, within ABZR87_RS17605at 315.383 kb on + strand, within ABZR87_RS17605at 315.438 kb on + strand, within ABZR87_RS17605at 315.446 kb on + strand, within ABZR87_RS17605at 315.696 kb on - strandat 315.696 kb on - strandat 315.791 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.797 kb on - strandat 315.851 kb on + strandat 315.982 kb on + strandat 315.982 kb on + strandat 315.982 kb on + strandat 315.983 kb on - strandat 316.469 kb on + strand, within ABZR87_RS17610at 316.658 kb on + strand, within ABZR87_RS17610at 316.784 kb on + strand, within ABZR87_RS17610at 316.785 kb on - strand, within ABZR87_RS17610at 316.796 kb on + strand, within ABZR87_RS17610at 316.937 kb on + strand, within ABZR87_RS17610at 317.046 kb on - strand, within ABZR87_RS17610at 317.405 kb on - strand, within ABZR87_RS17610at 317.405 kb on - strand, within ABZR87_RS17610at 317.462 kb on + strandat 317.463 kb on - strandat 317.604 kb on - strandat 317.700 kb on + strandat 317.700 kb on + strandat 317.700 kb on + strandat 317.701 kb on - strandat 317.701 kb on - strandat 317.701 kb on - strandat 317.701 kb on - strandat 317.701 kb on - strandat 317.766 kb on + strand, within ABZR87_RS17615at 317.766 kb on + strand, within ABZR87_RS17615at 317.766 kb on + strand, within ABZR87_RS17615at 317.766 kb on + strand, within ABZR87_RS17615at 317.766 kb on + strand, within ABZR87_RS17615at 317.766 kb on + strand, within ABZR87_RS17615at 317.767 kb on - strand, within ABZR87_RS17615at 317.767 kb on - strand, within ABZR87_RS17615at 317.767 kb on - strand, within ABZR87_RS17615at 317.790 kb on + strand, within ABZR87_RS17615at 317.790 kb on + strand, within ABZR87_RS17615at 317.790 kb on + strand, within ABZR87_RS17615at 317.793 kb on + strand, within ABZR87_RS17615at 317.794 kb on - strand, within ABZR87_RS17615at 317.794 kb on - strand, within ABZR87_RS17615at 317.814 kb on + strand, within ABZR87_RS17615at 317.814 kb on + strand, within ABZR87_RS17615at 317.815 kb on - strand, within ABZR87_RS17615at 317.815 kb on - strand, within ABZR87_RS17615at 317.815 kb on - strand, within ABZR87_RS17615at 317.815 kb on - strand, within ABZR87_RS17615at 318.111 kb on + strand, within ABZR87_RS17615at 318.111 kb on + strand, within ABZR87_RS17615at 318.111 kb on + strand, within ABZR87_RS17615at 318.112 kb on - strand, within ABZR87_RS17615at 318.278 kb on + strandat 318.278 kb on + strandat 318.278 kb on + strandat 318.278 kb on + strandat 318.279 kb on - strandat 318.279 kb on - strandat 318.279 kb on - strandat 318.279 kb on - strandat 318.279 kb on - strandat 318.389 kb on + strandat 318.389 kb on + strandat 318.390 kb on - strandat 318.390 kb on - strandat 318.430 kb on + strandat 318.430 kb on + strandat 318.430 kb on + strandat 318.430 kb on + strandat 318.430 kb on + strandat 318.431 kb on - strandat 318.431 kb on - strandat 318.431 kb on - strandat 318.513 kb on + strandat 318.513 kb on + strandat 318.514 kb on - strandat 318.514 kb on - strandat 318.592 kb on + strand, within ABZR87_RS17620at 318.592 kb on + strand, within ABZR87_RS17620at 318.592 kb on + strand, within ABZR87_RS17620at 318.592 kb on + strand, within ABZR87_RS17620at 318.593 kb on - strand, within ABZR87_RS17620at 318.593 kb on - strand, within ABZR87_RS17620at 318.593 kb on - strand, within ABZR87_RS17620

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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315,070 + ABZR87_RS17605 0.56 -2.1
315,260 - ABZR87_RS17605 0.66 +2.2
315,383 + ABZR87_RS17605 0.73 +0.0
315,438 + ABZR87_RS17605 0.76 +1.2
315,446 + ABZR87_RS17605 0.77 +0.7
315,696 - +0.1
315,696 - +1.6
315,791 + -1.1
315,796 + -1.5
315,796 + +1.6
315,796 + -0.4
315,796 + +1.5
315,796 + -0.4
315,797 - +0.7
315,851 + +2.8
315,982 + +0.9
315,982 + -0.3
315,982 + -2.1
315,983 - +0.2
316,469 + ABZR87_RS17610 0.35 +0.8
316,658 + ABZR87_RS17610 0.46 +0.1
316,784 + ABZR87_RS17610 0.53 +0.4
316,785 - ABZR87_RS17610 0.53 -1.9
316,796 + ABZR87_RS17610 0.53 -0.5
316,937 + ABZR87_RS17610 0.61 -1.2
317,046 - ABZR87_RS17610 0.68 -0.2
317,405 - ABZR87_RS17610 0.88 +1.1
317,405 - ABZR87_RS17610 0.88 +1.9
317,462 + +0.5
317,463 - +0.0
317,604 - -1.4
317,700 + -0.9
317,700 + -0.5
317,700 + +1.2
317,701 - -0.5
317,701 - -0.2
317,701 - -1.1
317,701 - +0.0
317,701 - -0.3
317,766 + ABZR87_RS17615 0.12 -0.9
317,766 + ABZR87_RS17615 0.12 +0.2
317,766 + ABZR87_RS17615 0.12 +0.2
317,766 + ABZR87_RS17615 0.12 -0.3
317,766 + ABZR87_RS17615 0.12 -0.2
317,766 + ABZR87_RS17615 0.12 -0.2
317,767 - ABZR87_RS17615 0.12 -2.0
317,767 - ABZR87_RS17615 0.12 +0.3
317,767 - ABZR87_RS17615 0.12 +1.1
317,790 + ABZR87_RS17615 0.16 +0.6
317,790 + ABZR87_RS17615 0.16 +0.8
317,790 + ABZR87_RS17615 0.16 +0.4
317,793 + ABZR87_RS17615 0.17 +1.3
317,794 - ABZR87_RS17615 0.17 +0.2
317,794 - ABZR87_RS17615 0.17 +1.4
317,814 + ABZR87_RS17615 0.21 -0.7
317,814 + ABZR87_RS17615 0.21 -0.8
317,815 - ABZR87_RS17615 0.21 -0.6
317,815 - ABZR87_RS17615 0.21 -1.8
317,815 - ABZR87_RS17615 0.21 +1.3
317,815 - ABZR87_RS17615 0.21 -0.0
318,111 + ABZR87_RS17615 0.75 +0.0
318,111 + ABZR87_RS17615 0.75 +1.2
318,111 + ABZR87_RS17615 0.75 -0.4
318,112 - ABZR87_RS17615 0.75 +0.6
318,278 + +2.1
318,278 + +0.7
318,278 + -2.9
318,278 + +0.2
318,279 - -1.6
318,279 - -0.8
318,279 - -0.0
318,279 - -2.9
318,279 - +0.5
318,389 + -0.4
318,389 + +1.5
318,390 - -0.7
318,390 - -0.1
318,430 + -0.4
318,430 + -0.7
318,430 + -0.3
318,430 + +0.3
318,430 + -1.1
318,431 - +0.2
318,431 - +0.9
318,431 - -2.5
318,513 + +0.9
318,513 + +0.4
318,514 - -0.0
318,514 - -0.5
318,592 + ABZR87_RS17620 0.14 -0.0
318,592 + ABZR87_RS17620 0.14 -0.6
318,592 + ABZR87_RS17620 0.14 -0.4
318,592 + ABZR87_RS17620 0.14 -0.3
318,593 - ABZR87_RS17620 0.14 -0.2
318,593 - ABZR87_RS17620 0.14 +0.9
318,593 - ABZR87_RS17620 0.14 +0.1

Or see this region's nucleotide sequence