Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17585 and ABZR87_RS17590 are separated by 9 nucleotides ABZR87_RS17590 and ABZR87_RS17595 are separated by 294 nucleotides ABZR87_RS17595 and ABZR87_RS17600 are separated by 285 nucleotides
ABZR87_RS17585: ABZR87_RS17585 - alpha/beta hydrolase domain-containing protein, at 307,080 to 309,158
_RS17585
ABZR87_RS17590: ABZR87_RS17590 - sensor domain-containing diguanylate cyclase, at 309,168 to 310,685
_RS17590
ABZR87_RS17595: ABZR87_RS17595 - hypothetical protein, at 310,980 to 311,174
_RS17595
ABZR87_RS17600: ABZR87_RS17600 - bifunctional lysylphosphatidylglycerol flippase/synthetase MprF, at 311,460 to 314,093
_RS17600
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 308.247 kb on + strand, within ABZR87_RS17585 at 308.247 kb on + strand, within ABZR87_RS17585 at 308.248 kb on - strand, within ABZR87_RS17585 at 308.248 kb on - strand, within ABZR87_RS17585 at 308.248 kb on - strand, within ABZR87_RS17585 at 308.427 kb on + strand, within ABZR87_RS17585 at 308.427 kb on + strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.431 kb on - strand, within ABZR87_RS17585 at 308.431 kb on - strand, within ABZR87_RS17585 at 308.434 kb on - strand, within ABZR87_RS17585 at 308.508 kb on + strand, within ABZR87_RS17585 at 308.508 kb on + strand, within ABZR87_RS17585 at 308.508 kb on + strand, within ABZR87_RS17585 at 308.521 kb on - strand, within ABZR87_RS17585 at 308.521 kb on - strand, within ABZR87_RS17585 at 308.566 kb on + strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.568 kb on + strand, within ABZR87_RS17585 at 308.568 kb on + strand, within ABZR87_RS17585 at 308.568 kb on + strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.695 kb on - strand, within ABZR87_RS17585 at 308.715 kb on + strand, within ABZR87_RS17585 at 308.716 kb on - strand, within ABZR87_RS17585 at 308.742 kb on + strand, within ABZR87_RS17585 at 308.742 kb on + strand, within ABZR87_RS17585 at 308.742 kb on + strand, within ABZR87_RS17585 at 308.743 kb on - strand, within ABZR87_RS17585 at 308.790 kb on + strand, within ABZR87_RS17585 at 308.791 kb on - strand, within ABZR87_RS17585 at 308.791 kb on - strand, within ABZR87_RS17585 at 308.791 kb on - strand, within ABZR87_RS17585 at 308.805 kb on + strand, within ABZR87_RS17585 at 308.805 kb on + strand, within ABZR87_RS17585 at 309.027 kb on + strand at 309.045 kb on + strand at 309.046 kb on - strand at 309.046 kb on - strand at 309.046 kb on - strand at 309.156 kb on + strand at 309.156 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.340 kb on + strand, within ABZR87_RS17590 at 309.461 kb on - strand, within ABZR87_RS17590 at 309.551 kb on - strand, within ABZR87_RS17590 at 309.563 kb on - strand, within ABZR87_RS17590 at 309.563 kb on - strand, within ABZR87_RS17590 at 309.563 kb on - strand, within ABZR87_RS17590 at 309.692 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.836 kb on - strand, within ABZR87_RS17590 at 309.836 kb on - strand, within ABZR87_RS17590 at 309.836 kb on - strand, within ABZR87_RS17590 at 309.888 kb on - strand, within ABZR87_RS17590 at 309.915 kb on - strand, within ABZR87_RS17590 at 309.940 kb on + strand, within ABZR87_RS17590 at 309.940 kb on + strand, within ABZR87_RS17590 at 309.940 kb on + strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 310.019 kb on - strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.274 kb on - strand, within ABZR87_RS17590 at 310.291 kb on + strand, within ABZR87_RS17590 at 310.291 kb on + strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.638 kb on + strand at 310.677 kb on + strand at 310.678 kb on - strand at 310.703 kb on + strand at 310.703 kb on + strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.757 kb on + strand at 310.757 kb on + strand at 310.757 kb on + strand at 310.758 kb on - strand at 310.761 kb on + strand at 310.762 kb on - strand at 310.854 kb on + strand at 310.854 kb on + strand at 310.855 kb on - strand at 310.855 kb on - strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.950 kb on + strand at 310.950 kb on + strand at 310.951 kb on - strand at 310.951 kb on - strand at 310.960 kb on - strand at 311.048 kb on + strand, within ABZR87_RS17595 at 311.049 kb on - strand, within ABZR87_RS17595 at 311.172 kb on + strand at 311.172 kb on + strand at 311.173 kb on - strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.311 kb on + strand at 311.655 kb on + strand at 311.655 kb on + strand at 311.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 308,247 + ABZR87_RS17585 0.56 +0.8 308,247 + ABZR87_RS17585 0.56 +0.5 308,248 - ABZR87_RS17585 0.56 -0.4 308,248 - ABZR87_RS17585 0.56 +4.1 308,248 - ABZR87_RS17585 0.56 +0.5 308,427 + ABZR87_RS17585 0.65 -1.1 308,427 + ABZR87_RS17585 0.65 -0.3 308,428 - ABZR87_RS17585 0.65 -0.2 308,428 - ABZR87_RS17585 0.65 +1.2 308,428 - ABZR87_RS17585 0.65 -0.3 308,428 - ABZR87_RS17585 0.65 +0.6 308,430 + ABZR87_RS17585 0.65 +1.0 308,430 + ABZR87_RS17585 0.65 -0.5 308,430 + ABZR87_RS17585 0.65 -1.0 308,430 + ABZR87_RS17585 0.65 +0.0 308,430 + ABZR87_RS17585 0.65 -0.5 308,430 + ABZR87_RS17585 0.65 -0.8 308,431 - ABZR87_RS17585 0.65 -0.1 308,431 - ABZR87_RS17585 0.65 -0.3 308,434 - ABZR87_RS17585 0.65 -0.7 308,508 + ABZR87_RS17585 0.69 +0.6 308,508 + ABZR87_RS17585 0.69 -0.2 308,508 + ABZR87_RS17585 0.69 +0.3 308,521 - ABZR87_RS17585 0.69 -1.1 308,521 - ABZR87_RS17585 0.69 +1.0 308,566 + ABZR87_RS17585 0.71 -0.2 308,567 - ABZR87_RS17585 0.72 +0.0 308,567 - ABZR87_RS17585 0.72 +0.2 308,567 - ABZR87_RS17585 0.72 +0.5 308,567 - ABZR87_RS17585 0.72 -1.7 308,567 - ABZR87_RS17585 0.72 +3.2 308,567 - ABZR87_RS17585 0.72 -0.1 308,567 - ABZR87_RS17585 0.72 -0.1 308,568 + ABZR87_RS17585 0.72 +0.6 308,568 + ABZR87_RS17585 0.72 -0.6 308,568 + ABZR87_RS17585 0.72 -0.6 308,569 - ABZR87_RS17585 0.72 +0.6 308,569 - ABZR87_RS17585 0.72 -1.1 308,569 - ABZR87_RS17585 0.72 -0.0 308,569 - ABZR87_RS17585 0.72 +1.4 308,569 - ABZR87_RS17585 0.72 -1.7 308,694 + ABZR87_RS17585 0.78 +0.3 308,694 + ABZR87_RS17585 0.78 -1.8 308,694 + ABZR87_RS17585 0.78 -0.1 308,694 + ABZR87_RS17585 0.78 +1.2 308,694 + ABZR87_RS17585 0.78 -0.1 308,694 + ABZR87_RS17585 0.78 +0.6 308,694 + ABZR87_RS17585 0.78 +0.3 308,695 - ABZR87_RS17585 0.78 +1.0 308,715 + ABZR87_RS17585 0.79 +0.1 308,716 - ABZR87_RS17585 0.79 +0.1 308,742 + ABZR87_RS17585 0.80 +1.7 308,742 + ABZR87_RS17585 0.80 +1.2 308,742 + ABZR87_RS17585 0.80 +3.8 308,743 - ABZR87_RS17585 0.80 -0.2 308,790 + ABZR87_RS17585 0.82 +0.6 308,791 - ABZR87_RS17585 0.82 +0.4 308,791 - ABZR87_RS17585 0.82 +0.3 308,791 - ABZR87_RS17585 0.82 +0.0 308,805 + ABZR87_RS17585 0.83 -1.1 308,805 + ABZR87_RS17585 0.83 -0.2 309,027 + -0.9 309,045 + -0.4 309,046 - -0.1 309,046 - +0.3 309,046 - +2.2 309,156 + +3.8 309,156 + +2.2 309,238 + +0.3 309,238 + -0.5 309,238 + +2.5 309,238 + -0.6 309,238 + -1.0 309,238 + +0.6 309,238 + +0.4 309,239 - +0.4 309,239 - -0.5 309,239 - +0.0 309,239 - -0.6 309,340 + ABZR87_RS17590 0.11 -0.8 309,461 - ABZR87_RS17590 0.19 +0.1 309,551 - ABZR87_RS17590 0.25 +1.5 309,563 - ABZR87_RS17590 0.26 +0.3 309,563 - ABZR87_RS17590 0.26 +0.6 309,563 - ABZR87_RS17590 0.26 +0.1 309,692 + ABZR87_RS17590 0.35 +0.6 309,835 + ABZR87_RS17590 0.44 -1.7 309,835 + ABZR87_RS17590 0.44 +4.1 309,835 + ABZR87_RS17590 0.44 +0.2 309,835 + ABZR87_RS17590 0.44 +1.6 309,836 - ABZR87_RS17590 0.44 -0.7 309,836 - ABZR87_RS17590 0.44 +0.2 309,836 - ABZR87_RS17590 0.44 +1.0 309,888 - ABZR87_RS17590 0.47 -1.5 309,915 - ABZR87_RS17590 0.49 -0.7 309,940 + ABZR87_RS17590 0.51 -1.9 309,940 + ABZR87_RS17590 0.51 +0.1 309,940 + ABZR87_RS17590 0.51 -0.6 309,941 - ABZR87_RS17590 0.51 -0.5 309,941 - ABZR87_RS17590 0.51 -0.1 309,941 - ABZR87_RS17590 0.51 +4.2 309,941 - ABZR87_RS17590 0.51 +0.3 309,941 - ABZR87_RS17590 0.51 -1.6 310,019 - ABZR87_RS17590 0.56 +0.9 310,232 + ABZR87_RS17590 0.70 +1.0 310,232 + ABZR87_RS17590 0.70 +0.3 310,232 + ABZR87_RS17590 0.70 -0.9 310,232 + ABZR87_RS17590 0.70 +0.2 310,233 - ABZR87_RS17590 0.70 +2.2 310,233 - ABZR87_RS17590 0.70 +0.4 310,233 - ABZR87_RS17590 0.70 +1.0 310,233 - ABZR87_RS17590 0.70 +0.2 310,234 + ABZR87_RS17590 0.70 +1.1 310,234 + ABZR87_RS17590 0.70 +1.6 310,234 + ABZR87_RS17590 0.70 -1.3 310,234 + ABZR87_RS17590 0.70 -1.1 310,234 + ABZR87_RS17590 0.70 -0.7 310,235 - ABZR87_RS17590 0.70 +1.0 310,235 - ABZR87_RS17590 0.70 -0.1 310,235 - ABZR87_RS17590 0.70 +0.9 310,235 - ABZR87_RS17590 0.70 -1.3 310,235 - ABZR87_RS17590 0.70 +0.5 310,274 - ABZR87_RS17590 0.73 +0.3 310,291 + ABZR87_RS17590 0.74 +0.2 310,291 + ABZR87_RS17590 0.74 -0.9 310,292 - ABZR87_RS17590 0.74 -1.8 310,292 - ABZR87_RS17590 0.74 +1.0 310,292 - ABZR87_RS17590 0.74 -0.1 310,292 - ABZR87_RS17590 0.74 +0.0 310,480 + ABZR87_RS17590 0.86 +0.5 310,480 + ABZR87_RS17590 0.86 -1.4 310,480 + ABZR87_RS17590 0.86 -1.0 310,480 + ABZR87_RS17590 0.86 -1.3 310,480 + ABZR87_RS17590 0.86 -0.4 310,480 + ABZR87_RS17590 0.86 -0.2 310,480 + ABZR87_RS17590 0.86 -0.4 310,480 + ABZR87_RS17590 0.86 +1.8 310,481 - ABZR87_RS17590 0.86 -2.5 310,481 - ABZR87_RS17590 0.86 -0.5 310,481 - ABZR87_RS17590 0.86 -2.2 310,481 - ABZR87_RS17590 0.86 +0.1 310,481 - ABZR87_RS17590 0.86 -1.2 310,481 - ABZR87_RS17590 0.86 -0.5 310,481 - ABZR87_RS17590 0.86 -0.3 310,481 - ABZR87_RS17590 0.86 -0.2 310,481 - ABZR87_RS17590 0.86 -2.6 310,638 + +1.8 310,677 + -0.7 310,678 - -0.1 310,703 + +1.4 310,703 + -0.8 310,755 - +1.9 310,755 - +3.0 310,755 - +0.3 310,755 - -1.6 310,755 - +2.3 310,755 - -0.9 310,755 - +2.2 310,757 + +0.1 310,757 + +0.0 310,757 + -0.2 310,758 - -0.7 310,761 + +2.0 310,762 - -0.3 310,854 + -0.5 310,854 + +0.0 310,855 - -0.2 310,855 - +2.2 310,904 + -0.3 310,904 + -1.0 310,904 + +0.4 310,904 + +0.8 310,904 + -0.8 310,904 + -0.4 310,904 + +1.2 310,904 + +0.9 310,904 + -2.3 310,904 + +0.5 310,904 + +0.8 310,904 + -0.1 310,904 + +1.9 310,904 + +0.8 310,904 + +0.5 310,905 - -0.7 310,905 - -0.4 310,905 - -0.7 310,905 - +0.6 310,905 - -0.2 310,905 - -0.8 310,905 - -0.9 310,905 - +0.4 310,905 - -1.2 310,905 - +2.0 310,905 - -0.4 310,905 - -0.6 310,905 - -0.2 310,905 - -1.3 310,950 + -0.0 310,950 + +0.9 310,951 - -0.1 310,951 - -1.2 310,960 - -3.0 311,048 + ABZR87_RS17595 0.35 -1.1 311,049 - ABZR87_RS17595 0.35 +1.8 311,172 + +0.4 311,172 + +2.7 311,173 - +1.2 311,218 + +0.2 311,218 + -0.2 311,218 + +1.1 311,218 + +0.3 311,218 + -0.4 311,218 + -0.6 311,218 + -0.1 311,218 + -0.1 311,219 - +0.9 311,219 - -0.2 311,219 - +0.1 311,219 - +1.0 311,219 - -0.4 311,219 - +2.0 311,219 - -0.4 311,311 + +0.5 311,655 + -0.8 311,655 + +1.1 311,655 + -0.5
Or see this region's nucleotide sequence