Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17165 and ABZR87_RS17170 are separated by 131 nucleotides ABZR87_RS17170 and ABZR87_RS17175 are separated by 19 nucleotides ABZR87_RS17175 and ABZR87_RS17180 are separated by 225 nucleotides
ABZR87_RS17165: ABZR87_RS17165 - diguanylate cyclase, at 196,082 to 197,731
_RS17165
ABZR87_RS17170: ABZR87_RS17170 - acyl-CoA thioesterase, at 197,863 to 198,369
_RS17170
ABZR87_RS17175: ABZR87_RS17175 - sensor histidine kinase, at 198,389 to 199,774
_RS17175
ABZR87_RS17180: ABZR87_RS17180 - class I SAM-dependent methyltransferase, at 200,000 to 200,752
_RS17180
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 197.561 kb on + strand, within ABZR87_RS17165 at 197.561 kb on + strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.562 kb on - strand, within ABZR87_RS17165 at 197.648 kb on + strand at 197.649 kb on - strand at 197.649 kb on - strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.674 kb on + strand at 197.729 kb on + strand at 197.730 kb on - strand at 197.750 kb on + strand at 197.751 kb on - strand at 197.766 kb on + strand at 197.767 kb on - strand at 197.767 kb on - strand at 197.857 kb on + strand at 197.857 kb on + strand at 197.858 kb on - strand at 197.858 kb on - strand at 197.902 kb on + strand at 197.902 kb on + strand at 197.903 kb on - strand at 197.971 kb on + strand, within ABZR87_RS17170 at 197.971 kb on + strand, within ABZR87_RS17170 at 197.971 kb on + strand, within ABZR87_RS17170 at 197.971 kb on + strand, within ABZR87_RS17170 at 197.972 kb on - strand, within ABZR87_RS17170 at 197.972 kb on - strand, within ABZR87_RS17170 at 198.000 kb on + strand, within ABZR87_RS17170 at 198.001 kb on - strand, within ABZR87_RS17170 at 198.001 kb on - strand, within ABZR87_RS17170 at 198.001 kb on - strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.004 kb on + strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.005 kb on - strand, within ABZR87_RS17170 at 198.202 kb on + strand, within ABZR87_RS17170 at 198.202 kb on + strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.203 kb on - strand, within ABZR87_RS17170 at 198.250 kb on + strand, within ABZR87_RS17170 at 198.329 kb on - strand at 198.394 kb on + strand at 198.432 kb on + strand at 198.432 kb on + strand at 198.433 kb on - strand at 198.433 kb on - strand at 198.433 kb on - strand at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.612 kb on + strand, within ABZR87_RS17175 at 198.613 kb on - strand, within ABZR87_RS17175 at 198.613 kb on - strand, within ABZR87_RS17175 at 198.613 kb on - strand, within ABZR87_RS17175 at 198.708 kb on + strand, within ABZR87_RS17175 at 198.708 kb on + strand, within ABZR87_RS17175 at 198.708 kb on + strand, within ABZR87_RS17175 at 198.709 kb on - strand, within ABZR87_RS17175 at 198.709 kb on - strand, within ABZR87_RS17175 at 198.798 kb on + strand, within ABZR87_RS17175 at 198.798 kb on + strand, within ABZR87_RS17175 at 198.798 kb on + strand, within ABZR87_RS17175 at 199.024 kb on - strand, within ABZR87_RS17175 at 199.084 kb on + strand, within ABZR87_RS17175 at 199.085 kb on - strand, within ABZR87_RS17175 at 199.085 kb on - strand, within ABZR87_RS17175 at 199.120 kb on - strand, within ABZR87_RS17175 at 199.120 kb on - strand, within ABZR87_RS17175 at 199.215 kb on + strand, within ABZR87_RS17175 at 199.216 kb on - strand, within ABZR87_RS17175 at 199.228 kb on - strand, within ABZR87_RS17175 at 199.228 kb on - strand, within ABZR87_RS17175 at 199.320 kb on + strand, within ABZR87_RS17175 at 199.321 kb on - strand, within ABZR87_RS17175 at 199.366 kb on + strand, within ABZR87_RS17175 at 199.367 kb on - strand, within ABZR87_RS17175 at 199.482 kb on + strand, within ABZR87_RS17175 at 199.482 kb on + strand, within ABZR87_RS17175 at 199.483 kb on - strand, within ABZR87_RS17175 at 199.542 kb on + strand, within ABZR87_RS17175 at 199.542 kb on + strand, within ABZR87_RS17175 at 199.542 kb on + strand, within ABZR87_RS17175 at 199.543 kb on - strand, within ABZR87_RS17175 at 199.543 kb on - strand, within ABZR87_RS17175 at 199.543 kb on - strand, within ABZR87_RS17175 at 199.719 kb on + strand at 199.719 kb on + strand at 199.719 kb on + strand at 199.719 kb on + strand at 199.729 kb on - strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.926 kb on + strand at 199.927 kb on - strand at 199.927 kb on - strand at 199.968 kb on + strand at 200.061 kb on + strand at 200.061 kb on + strand at 200.062 kb on - strand at 200.238 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.247 kb on - strand, within ABZR87_RS17180 at 200.303 kb on + strand, within ABZR87_RS17180 at 200.303 kb on + strand, within ABZR87_RS17180 at 200.304 kb on - strand, within ABZR87_RS17180 at 200.391 kb on + strand, within ABZR87_RS17180 at 200.547 kb on + strand, within ABZR87_RS17180 at 200.548 kb on - strand, within ABZR87_RS17180 at 200.701 kb on - strand at 200.764 kb on - strand at 200.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 197,561 + ABZR87_RS17165 0.90 +0.1 197,561 + ABZR87_RS17165 0.90 -0.1 197,562 - ABZR87_RS17165 0.90 -0.1 197,562 - ABZR87_RS17165 0.90 -0.0 197,562 - ABZR87_RS17165 0.90 -0.0 197,562 - ABZR87_RS17165 0.90 +4.0 197,648 + +0.5 197,649 - -1.7 197,649 - +0.1 197,674 + +1.4 197,674 + +1.6 197,674 + -0.6 197,674 + -1.9 197,729 + -0.4 197,730 - +1.3 197,750 + +0.5 197,751 - +1.1 197,766 + -0.2 197,767 - +0.7 197,767 - +3.3 197,857 + -0.3 197,857 + -0.3 197,858 - +0.5 197,858 - +0.8 197,902 + +0.7 197,902 + +0.2 197,903 - +0.6 197,971 + ABZR87_RS17170 0.21 +1.2 197,971 + ABZR87_RS17170 0.21 -0.3 197,971 + ABZR87_RS17170 0.21 +1.3 197,971 + ABZR87_RS17170 0.21 -1.7 197,972 - ABZR87_RS17170 0.21 +0.3 197,972 - ABZR87_RS17170 0.21 -0.3 198,000 + ABZR87_RS17170 0.27 -0.1 198,001 - ABZR87_RS17170 0.27 +2.3 198,001 - ABZR87_RS17170 0.27 +0.8 198,001 - ABZR87_RS17170 0.27 +2.2 198,004 + ABZR87_RS17170 0.28 +0.1 198,004 + ABZR87_RS17170 0.28 +0.8 198,004 + ABZR87_RS17170 0.28 +0.7 198,004 + ABZR87_RS17170 0.28 -1.0 198,005 - ABZR87_RS17170 0.28 +0.4 198,005 - ABZR87_RS17170 0.28 -0.0 198,005 - ABZR87_RS17170 0.28 +0.6 198,005 - ABZR87_RS17170 0.28 +0.4 198,202 + ABZR87_RS17170 0.67 -0.1 198,202 + ABZR87_RS17170 0.67 -1.3 198,203 - ABZR87_RS17170 0.67 -0.4 198,203 - ABZR87_RS17170 0.67 +0.0 198,203 - ABZR87_RS17170 0.67 +0.2 198,203 - ABZR87_RS17170 0.67 -0.3 198,250 + ABZR87_RS17170 0.76 -0.1 198,329 - +2.5 198,394 + +0.6 198,432 + +1.3 198,432 + +1.5 198,433 - +0.4 198,433 - +1.4 198,433 - -1.7 198,612 + ABZR87_RS17175 0.16 +2.2 198,612 + ABZR87_RS17175 0.16 -0.1 198,612 + ABZR87_RS17175 0.16 +0.5 198,612 + ABZR87_RS17175 0.16 -1.4 198,612 + ABZR87_RS17175 0.16 -0.7 198,612 + ABZR87_RS17175 0.16 +0.4 198,613 - ABZR87_RS17175 0.16 -0.6 198,613 - ABZR87_RS17175 0.16 +0.0 198,613 - ABZR87_RS17175 0.16 -1.1 198,708 + ABZR87_RS17175 0.23 +2.1 198,708 + ABZR87_RS17175 0.23 -0.1 198,708 + ABZR87_RS17175 0.23 -1.0 198,709 - ABZR87_RS17175 0.23 -2.1 198,709 - ABZR87_RS17175 0.23 -0.0 198,798 + ABZR87_RS17175 0.30 -0.9 198,798 + ABZR87_RS17175 0.30 -0.9 198,798 + ABZR87_RS17175 0.30 +0.2 199,024 - ABZR87_RS17175 0.46 -0.9 199,084 + ABZR87_RS17175 0.50 -0.8 199,085 - ABZR87_RS17175 0.50 +0.3 199,085 - ABZR87_RS17175 0.50 -2.2 199,120 - ABZR87_RS17175 0.53 +0.8 199,120 - ABZR87_RS17175 0.53 +1.1 199,215 + ABZR87_RS17175 0.60 -0.6 199,216 - ABZR87_RS17175 0.60 +2.2 199,228 - ABZR87_RS17175 0.61 +0.7 199,228 - ABZR87_RS17175 0.61 -0.1 199,320 + ABZR87_RS17175 0.67 +1.5 199,321 - ABZR87_RS17175 0.67 -0.6 199,366 + ABZR87_RS17175 0.70 -0.1 199,367 - ABZR87_RS17175 0.71 -0.2 199,482 + ABZR87_RS17175 0.79 -0.5 199,482 + ABZR87_RS17175 0.79 -0.5 199,483 - ABZR87_RS17175 0.79 -3.2 199,542 + ABZR87_RS17175 0.83 -0.4 199,542 + ABZR87_RS17175 0.83 +0.8 199,542 + ABZR87_RS17175 0.83 -0.3 199,543 - ABZR87_RS17175 0.83 +0.8 199,543 - ABZR87_RS17175 0.83 -0.1 199,543 - ABZR87_RS17175 0.83 -1.9 199,719 + +1.2 199,719 + +1.9 199,719 + +0.6 199,719 + -0.3 199,729 - +0.8 199,770 + -1.5 199,770 + -1.3 199,770 + +0.5 199,770 + -0.5 199,770 + +1.0 199,770 + +0.2 199,771 - +1.5 199,771 - -1.4 199,771 - -3.2 199,771 - -0.4 199,771 - +0.5 199,862 + -0.6 199,862 + +3.8 199,862 + -1.7 199,862 + +4.1 199,862 + -1.6 199,926 + -0.4 199,927 - +1.3 199,927 - -0.0 199,968 + +0.5 200,061 + -1.1 200,061 + -0.5 200,062 - +1.1 200,238 + ABZR87_RS17180 0.32 +0.2 200,246 + ABZR87_RS17180 0.33 -1.8 200,246 + ABZR87_RS17180 0.33 -0.6 200,246 + ABZR87_RS17180 0.33 +1.6 200,247 - ABZR87_RS17180 0.33 -2.2 200,303 + ABZR87_RS17180 0.40 -0.4 200,303 + ABZR87_RS17180 0.40 +2.2 200,304 - ABZR87_RS17180 0.40 -1.3 200,391 + ABZR87_RS17180 0.52 +1.9 200,547 + ABZR87_RS17180 0.73 +0.9 200,548 - ABZR87_RS17180 0.73 +0.3 200,701 - +0.3 200,764 - +0.8 200,764 - -0.8
Or see this region's nucleotide sequence