Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17145 and ABZR87_RS17150 are separated by 47 nucleotides ABZR87_RS17150 and ABZR87_RS17155 overlap by 4 nucleotides ABZR87_RS17155 and ABZR87_RS17160 are separated by 53 nucleotides
ABZR87_RS17145: ABZR87_RS17145 - AMP nucleosidase, at 191,816 to 193,297
_RS17145
ABZR87_RS17150: ABZR87_RS17150 - ABC transporter permease subunit, at 193,345 to 194,118
_RS17150
ABZR87_RS17155: ABZR87_RS17155 - amino acid ABC transporter permease, at 194,115 to 194,825
_RS17155
ABZR87_RS17160: ABZR87_RS17160 - ABC transporter substrate-binding protein, at 194,879 to 195,766
_RS17160
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.645 kb on + strand, within ABZR87_RS17145 at 192.646 kb on - strand, within ABZR87_RS17145 at 192.655 kb on - strand, within ABZR87_RS17145 at 192.705 kb on + strand, within ABZR87_RS17145 at 192.706 kb on - strand, within ABZR87_RS17145 at 192.706 kb on - strand, within ABZR87_RS17145 at 192.706 kb on - strand, within ABZR87_RS17145 at 192.711 kb on + strand, within ABZR87_RS17145 at 192.711 kb on + strand, within ABZR87_RS17145 at 192.712 kb on - strand, within ABZR87_RS17145 at 192.712 kb on - strand, within ABZR87_RS17145 at 192.712 kb on - strand, within ABZR87_RS17145 at 192.789 kb on + strand, within ABZR87_RS17145 at 192.789 kb on + strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.839 kb on - strand, within ABZR87_RS17145 at 192.839 kb on - strand, within ABZR87_RS17145 at 192.957 kb on + strand, within ABZR87_RS17145 at 192.957 kb on + strand, within ABZR87_RS17145 at 192.958 kb on - strand, within ABZR87_RS17145 at 192.958 kb on - strand, within ABZR87_RS17145 at 192.980 kb on + strand, within ABZR87_RS17145 at 192.981 kb on - strand, within ABZR87_RS17145 at 192.987 kb on + strand, within ABZR87_RS17145 at 192.990 kb on + strand, within ABZR87_RS17145 at 192.990 kb on + strand, within ABZR87_RS17145 at 192.990 kb on + strand, within ABZR87_RS17145 at 192.991 kb on - strand, within ABZR87_RS17145 at 193.029 kb on + strand, within ABZR87_RS17145 at 193.041 kb on + strand, within ABZR87_RS17145 at 193.110 kb on + strand, within ABZR87_RS17145 at 193.116 kb on + strand, within ABZR87_RS17145 at 193.116 kb on + strand, within ABZR87_RS17145 at 193.117 kb on - strand, within ABZR87_RS17145 at 193.117 kb on - strand, within ABZR87_RS17145 at 193.200 kb on + strand at 193.200 kb on + strand at 193.201 kb on - strand at 193.201 kb on - strand at 193.276 kb on + strand at 193.276 kb on + strand at 193.309 kb on + strand at 193.310 kb on - strand at 193.346 kb on + strand at 193.346 kb on + strand at 193.347 kb on - strand at 193.347 kb on - strand at 193.347 kb on - strand at 193.490 kb on + strand, within ABZR87_RS17150 at 193.490 kb on + strand, within ABZR87_RS17150 at 193.490 kb on + strand, within ABZR87_RS17150 at 193.491 kb on - strand, within ABZR87_RS17150 at 193.491 kb on - strand, within ABZR87_RS17150 at 193.513 kb on + strand, within ABZR87_RS17150 at 193.513 kb on + strand, within ABZR87_RS17150 at 193.514 kb on - strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.650 kb on + strand, within ABZR87_RS17150 at 193.650 kb on + strand, within ABZR87_RS17150 at 193.650 kb on + strand, within ABZR87_RS17150 at 193.651 kb on - strand, within ABZR87_RS17150 at 193.651 kb on - strand, within ABZR87_RS17150 at 193.651 kb on - strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.776 kb on - strand, within ABZR87_RS17150 at 193.776 kb on - strand, within ABZR87_RS17150 at 193.776 kb on - strand, within ABZR87_RS17150 at 193.860 kb on - strand, within ABZR87_RS17150 at 193.860 kb on - strand, within ABZR87_RS17150 at 193.860 kb on - strand, within ABZR87_RS17150 at 193.882 kb on + strand, within ABZR87_RS17150 at 194.084 kb on + strand at 194.085 kb on - strand at 194.085 kb on - strand at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.282 kb on + strand, within ABZR87_RS17155 at 194.283 kb on - strand, within ABZR87_RS17155 at 194.284 kb on + strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.509 kb on + strand, within ABZR87_RS17155 at 194.510 kb on - strand, within ABZR87_RS17155 at 194.645 kb on - strand, within ABZR87_RS17155 at 194.668 kb on - strand, within ABZR87_RS17155 at 194.836 kb on + strand at 194.836 kb on + strand at 194.837 kb on - strand at 194.949 kb on + strand at 194.949 kb on + strand at 194.950 kb on - strand at 194.950 kb on - strand at 194.950 kb on - strand at 194.950 kb on - strand at 194.950 kb on - strand at 194.950 kb on - strand at 194.950 kb on - strand at 195.048 kb on + strand, within ABZR87_RS17160 at 195.049 kb on - strand, within ABZR87_RS17160 at 195.049 kb on - strand, within ABZR87_RS17160 at 195.049 kb on - strand, within ABZR87_RS17160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 192,585 + ABZR87_RS17145 0.52 -0.0 192,585 + ABZR87_RS17145 0.52 -2.5 192,585 + ABZR87_RS17145 0.52 -0.8 192,585 + ABZR87_RS17145 0.52 -0.7 192,585 + ABZR87_RS17145 0.52 -1.3 192,586 - ABZR87_RS17145 0.52 -1.3 192,586 - ABZR87_RS17145 0.52 -0.5 192,586 - ABZR87_RS17145 0.52 -0.5 192,586 - ABZR87_RS17145 0.52 -1.6 192,586 - ABZR87_RS17145 0.52 -2.2 192,586 - ABZR87_RS17145 0.52 -0.3 192,645 + ABZR87_RS17145 0.56 -0.8 192,646 - ABZR87_RS17145 0.56 +0.0 192,655 - ABZR87_RS17145 0.57 -1.9 192,705 + ABZR87_RS17145 0.60 +0.0 192,706 - ABZR87_RS17145 0.60 -1.4 192,706 - ABZR87_RS17145 0.60 +0.0 192,706 - ABZR87_RS17145 0.60 -1.3 192,711 + ABZR87_RS17145 0.60 +0.7 192,711 + ABZR87_RS17145 0.60 -2.1 192,712 - ABZR87_RS17145 0.60 -1.6 192,712 - ABZR87_RS17145 0.60 +0.0 192,712 - ABZR87_RS17145 0.60 -0.6 192,789 + ABZR87_RS17145 0.66 +0.5 192,789 + ABZR87_RS17145 0.66 -0.6 192,790 - ABZR87_RS17145 0.66 -1.5 192,790 - ABZR87_RS17145 0.66 +0.4 192,790 - ABZR87_RS17145 0.66 -0.6 192,790 - ABZR87_RS17145 0.66 -2.2 192,790 - ABZR87_RS17145 0.66 -0.5 192,839 - ABZR87_RS17145 0.69 -1.5 192,839 - ABZR87_RS17145 0.69 -1.0 192,957 + ABZR87_RS17145 0.77 +0.3 192,957 + ABZR87_RS17145 0.77 -0.8 192,958 - ABZR87_RS17145 0.77 +1.0 192,958 - ABZR87_RS17145 0.77 -0.0 192,980 + ABZR87_RS17145 0.79 -2.3 192,981 - ABZR87_RS17145 0.79 +0.5 192,987 + ABZR87_RS17145 0.79 -0.0 192,990 + ABZR87_RS17145 0.79 +0.2 192,990 + ABZR87_RS17145 0.79 -1.8 192,990 + ABZR87_RS17145 0.79 +0.4 192,991 - ABZR87_RS17145 0.79 -1.3 193,029 + ABZR87_RS17145 0.82 -1.8 193,041 + ABZR87_RS17145 0.83 +0.8 193,110 + ABZR87_RS17145 0.87 -0.6 193,116 + ABZR87_RS17145 0.88 -0.5 193,116 + ABZR87_RS17145 0.88 +1.6 193,117 - ABZR87_RS17145 0.88 -0.8 193,117 - ABZR87_RS17145 0.88 -0.6 193,200 + -1.8 193,200 + +1.1 193,201 - -0.8 193,201 - -0.9 193,276 + +0.5 193,276 + +0.6 193,309 + -1.0 193,310 - -1.8 193,346 + +1.6 193,346 + +0.2 193,347 - +0.6 193,347 - -0.5 193,347 - -1.0 193,490 + ABZR87_RS17150 0.19 -1.4 193,490 + ABZR87_RS17150 0.19 -0.5 193,490 + ABZR87_RS17150 0.19 +0.1 193,491 - ABZR87_RS17150 0.19 -0.3 193,491 - ABZR87_RS17150 0.19 -1.3 193,513 + ABZR87_RS17150 0.22 +0.2 193,513 + ABZR87_RS17150 0.22 +2.1 193,514 - ABZR87_RS17150 0.22 +0.9 193,589 + ABZR87_RS17150 0.32 +0.0 193,589 + ABZR87_RS17150 0.32 -0.8 193,589 + ABZR87_RS17150 0.32 +2.6 193,589 + ABZR87_RS17150 0.32 +3.4 193,650 + ABZR87_RS17150 0.39 +1.6 193,650 + ABZR87_RS17150 0.39 -0.7 193,650 + ABZR87_RS17150 0.39 +0.2 193,651 - ABZR87_RS17150 0.40 -2.3 193,651 - ABZR87_RS17150 0.40 +0.4 193,651 - ABZR87_RS17150 0.40 +0.1 193,775 + ABZR87_RS17150 0.56 -0.1 193,775 + ABZR87_RS17150 0.56 +0.6 193,775 + ABZR87_RS17150 0.56 +0.1 193,775 + ABZR87_RS17150 0.56 -0.5 193,776 - ABZR87_RS17150 0.56 +0.1 193,776 - ABZR87_RS17150 0.56 +2.2 193,776 - ABZR87_RS17150 0.56 +9.1 193,860 - ABZR87_RS17150 0.67 -1.1 193,860 - ABZR87_RS17150 0.67 +2.8 193,860 - ABZR87_RS17150 0.67 -1.6 193,882 + ABZR87_RS17150 0.69 +0.3 194,084 + -0.7 194,085 - +0.8 194,085 - -1.5 194,215 + ABZR87_RS17155 0.14 -0.5 194,215 + ABZR87_RS17155 0.14 -0.7 194,215 + ABZR87_RS17155 0.14 +0.0 194,215 + ABZR87_RS17155 0.14 +1.9 194,215 + ABZR87_RS17155 0.14 +1.0 194,215 + ABZR87_RS17155 0.14 -1.5 194,215 + ABZR87_RS17155 0.14 -0.5 194,215 + ABZR87_RS17155 0.14 -0.5 194,216 - ABZR87_RS17155 0.14 +0.2 194,216 - ABZR87_RS17155 0.14 -0.7 194,216 - ABZR87_RS17155 0.14 -1.0 194,216 - ABZR87_RS17155 0.14 -1.3 194,282 + ABZR87_RS17155 0.23 -0.1 194,283 - ABZR87_RS17155 0.24 +1.0 194,284 + ABZR87_RS17155 0.24 +0.9 194,285 - ABZR87_RS17155 0.24 +0.2 194,285 - ABZR87_RS17155 0.24 +2.2 194,285 - ABZR87_RS17155 0.24 +1.1 194,285 - ABZR87_RS17155 0.24 -2.1 194,509 + ABZR87_RS17155 0.55 +1.0 194,510 - ABZR87_RS17155 0.56 +0.5 194,645 - ABZR87_RS17155 0.75 -0.1 194,668 - ABZR87_RS17155 0.78 -0.8 194,836 + -0.9 194,836 + -0.7 194,837 - -3.3 194,949 + +1.0 194,949 + -0.2 194,950 - -0.5 194,950 - +0.0 194,950 - +1.1 194,950 - +0.3 194,950 - +0.4 194,950 - -1.5 194,950 - -0.4 195,048 + ABZR87_RS17160 0.19 +0.1 195,049 - ABZR87_RS17160 0.19 +0.3 195,049 - ABZR87_RS17160 0.19 -0.1 195,049 - ABZR87_RS17160 0.19 +0.7
Or see this region's nucleotide sequence