Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16815 and ABZR87_RS16820 are separated by 146 nucleotides ABZR87_RS16820 and ABZR87_RS16825 are separated by 310 nucleotides
ABZR87_RS16815: ABZR87_RS16815 - NAD(P)/FAD-dependent oxidoreductase, at 128,508 to 129,401
_RS16815
ABZR87_RS16820: ABZR87_RS16820 - TetR/AcrR family transcriptional regulator, at 129,548 to 130,186
_RS16820
ABZR87_RS16825: ABZR87_RS16825 - restriction endonuclease, at 130,497 to 131,474
_RS16825
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.611 kb on + strand, within ABZR87_RS16815 at 128.612 kb on - strand, within ABZR87_RS16815 at 128.612 kb on - strand, within ABZR87_RS16815 at 128.868 kb on - strand, within ABZR87_RS16815 at 128.944 kb on + strand, within ABZR87_RS16815 at 128.945 kb on - strand, within ABZR87_RS16815 at 128.945 kb on - strand, within ABZR87_RS16815 at 128.945 kb on - strand, within ABZR87_RS16815 at 128.945 kb on - strand, within ABZR87_RS16815 at 129.008 kb on - strand, within ABZR87_RS16815 at 129.008 kb on - strand, within ABZR87_RS16815 at 129.082 kb on + strand, within ABZR87_RS16815 at 129.082 kb on + strand, within ABZR87_RS16815 at 129.083 kb on - strand, within ABZR87_RS16815 at 129.083 kb on - strand, within ABZR87_RS16815 at 129.083 kb on - strand, within ABZR87_RS16815 at 129.234 kb on - strand, within ABZR87_RS16815 at 129.309 kb on - strand, within ABZR87_RS16815 at 129.509 kb on + strand at 129.541 kb on - strand at 129.690 kb on + strand, within ABZR87_RS16820 at 129.690 kb on + strand, within ABZR87_RS16820 at 129.690 kb on + strand, within ABZR87_RS16820 at 129.690 kb on + strand, within ABZR87_RS16820 at 129.707 kb on + strand, within ABZR87_RS16820 at 129.707 kb on + strand, within ABZR87_RS16820 at 129.708 kb on - strand, within ABZR87_RS16820 at 129.708 kb on - strand, within ABZR87_RS16820 at 129.708 kb on - strand, within ABZR87_RS16820 at 129.708 kb on - strand, within ABZR87_RS16820 at 129.935 kb on + strand, within ABZR87_RS16820 at 129.936 kb on - strand, within ABZR87_RS16820 at 129.936 kb on - strand, within ABZR87_RS16820 at 129.936 kb on - strand, within ABZR87_RS16820 at 129.936 kb on - strand, within ABZR87_RS16820 at 129.978 kb on + strand, within ABZR87_RS16820 at 129.979 kb on - strand, within ABZR87_RS16820 at 129.979 kb on - strand, within ABZR87_RS16820 at 129.979 kb on - strand, within ABZR87_RS16820 at 130.078 kb on + strand, within ABZR87_RS16820 at 130.078 kb on + strand, within ABZR87_RS16820 at 130.079 kb on - strand, within ABZR87_RS16820 at 130.079 kb on - strand, within ABZR87_RS16820 at 130.079 kb on - strand, within ABZR87_RS16820 at 130.123 kb on - strand at 130.130 kb on + strand at 130.130 kb on + strand at 130.131 kb on - strand at 130.131 kb on - strand at 130.196 kb on + strand at 130.196 kb on + strand at 130.196 kb on + strand at 130.196 kb on + strand at 130.196 kb on + strand at 130.197 kb on - strand at 130.197 kb on - strand at 130.197 kb on - strand at 130.197 kb on - strand at 130.197 kb on - strand at 130.236 kb on + strand at 130.327 kb on - strand at 130.327 kb on - strand at 130.327 kb on - strand at 130.395 kb on + strand at 130.395 kb on + strand at 130.395 kb on + strand at 130.395 kb on + strand at 130.395 kb on + strand at 130.396 kb on - strand at 130.396 kb on - strand at 130.396 kb on - strand at 130.396 kb on - strand at 130.396 kb on - strand at 130.396 kb on - strand at 130.396 kb on - strand at 130.463 kb on + strand at 130.463 kb on + strand at 130.464 kb on - strand at 130.471 kb on + strand at 130.481 kb on - strand at 130.495 kb on + strand at 130.534 kb on + strand at 130.534 kb on + strand at 130.535 kb on - strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.713 kb on + strand, within ABZR87_RS16825 at 130.713 kb on + strand, within ABZR87_RS16825 at 130.713 kb on + strand, within ABZR87_RS16825 at 130.713 kb on + strand, within ABZR87_RS16825 at 130.714 kb on - strand, within ABZR87_RS16825 at 130.714 kb on - strand, within ABZR87_RS16825 at 130.714 kb on - strand, within ABZR87_RS16825 at 130.989 kb on + strand, within ABZR87_RS16825 at 130.989 kb on + strand, within ABZR87_RS16825 at 130.989 kb on + strand, within ABZR87_RS16825 at 130.990 kb on - strand, within ABZR87_RS16825 at 130.990 kb on - strand, within ABZR87_RS16825 at 130.990 kb on - strand, within ABZR87_RS16825 at 130.992 kb on + strand, within ABZR87_RS16825 at 130.992 kb on + strand, within ABZR87_RS16825 at 130.993 kb on - strand, within ABZR87_RS16825 at 130.993 kb on - strand, within ABZR87_RS16825 at 130.993 kb on - strand, within ABZR87_RS16825 at 131.009 kb on + strand, within ABZR87_RS16825 at 131.009 kb on + strand, within ABZR87_RS16825 at 131.010 kb on - strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.061 kb on + strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825 at 131.062 kb on - strand, within ABZR87_RS16825
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 128,611 + ABZR87_RS16815 0.12 +0.4 128,611 + ABZR87_RS16815 0.12 -0.5 128,611 + ABZR87_RS16815 0.12 -1.9 128,611 + ABZR87_RS16815 0.12 +1.0 128,611 + ABZR87_RS16815 0.12 +1.6 128,611 + ABZR87_RS16815 0.12 -0.1 128,611 + ABZR87_RS16815 0.12 -0.3 128,612 - ABZR87_RS16815 0.12 +0.0 128,612 - ABZR87_RS16815 0.12 +0.8 128,868 - ABZR87_RS16815 0.40 -0.4 128,944 + ABZR87_RS16815 0.49 +5.0 128,945 - ABZR87_RS16815 0.49 +0.5 128,945 - ABZR87_RS16815 0.49 -0.4 128,945 - ABZR87_RS16815 0.49 -0.4 128,945 - ABZR87_RS16815 0.49 +1.3 129,008 - ABZR87_RS16815 0.56 +2.2 129,008 - ABZR87_RS16815 0.56 +0.1 129,082 + ABZR87_RS16815 0.64 -1.3 129,082 + ABZR87_RS16815 0.64 -1.0 129,083 - ABZR87_RS16815 0.64 -0.3 129,083 - ABZR87_RS16815 0.64 +0.2 129,083 - ABZR87_RS16815 0.64 +2.4 129,234 - ABZR87_RS16815 0.81 -0.1 129,309 - ABZR87_RS16815 0.90 -1.4 129,509 + -0.4 129,541 - +1.2 129,690 + ABZR87_RS16820 0.22 -1.4 129,690 + ABZR87_RS16820 0.22 -1.5 129,690 + ABZR87_RS16820 0.22 -1.9 129,690 + ABZR87_RS16820 0.22 -0.1 129,707 + ABZR87_RS16820 0.25 -0.8 129,707 + ABZR87_RS16820 0.25 -1.9 129,708 - ABZR87_RS16820 0.25 -1.1 129,708 - ABZR87_RS16820 0.25 -1.1 129,708 - ABZR87_RS16820 0.25 -2.6 129,708 - ABZR87_RS16820 0.25 -0.5 129,935 + ABZR87_RS16820 0.61 -1.4 129,936 - ABZR87_RS16820 0.61 -1.9 129,936 - ABZR87_RS16820 0.61 -1.2 129,936 - ABZR87_RS16820 0.61 -0.4 129,936 - ABZR87_RS16820 0.61 -1.0 129,978 + ABZR87_RS16820 0.67 -2.1 129,979 - ABZR87_RS16820 0.67 -3.1 129,979 - ABZR87_RS16820 0.67 -1.7 129,979 - ABZR87_RS16820 0.67 -2.1 130,078 + ABZR87_RS16820 0.83 -1.6 130,078 + ABZR87_RS16820 0.83 -0.1 130,079 - ABZR87_RS16820 0.83 -1.1 130,079 - ABZR87_RS16820 0.83 +1.0 130,079 - ABZR87_RS16820 0.83 +0.4 130,123 - -0.6 130,130 + -1.3 130,130 + -2.5 130,131 - +0.4 130,131 - -1.7 130,196 + -0.1 130,196 + -0.2 130,196 + +2.4 130,196 + +0.4 130,196 + -0.1 130,197 - +1.9 130,197 - +0.0 130,197 - -0.9 130,197 - -0.5 130,197 - -0.6 130,236 + -0.2 130,327 - -0.9 130,327 - -0.1 130,327 - -1.8 130,395 + +2.7 130,395 + +0.2 130,395 + +0.9 130,395 + -0.9 130,395 + -0.6 130,396 - +0.2 130,396 - +0.7 130,396 - +1.5 130,396 - -0.5 130,396 - -0.2 130,396 - +0.1 130,396 - -0.3 130,463 + -1.0 130,463 + +0.3 130,464 - +0.2 130,471 + +1.2 130,481 - -1.4 130,495 + -0.0 130,534 + -0.9 130,534 + -1.0 130,535 - -0.0 130,584 + -1.1 130,585 - -0.6 130,585 - -1.7 130,713 + ABZR87_RS16825 0.22 -0.6 130,713 + ABZR87_RS16825 0.22 -0.4 130,713 + ABZR87_RS16825 0.22 +0.0 130,713 + ABZR87_RS16825 0.22 -0.5 130,714 - ABZR87_RS16825 0.22 -0.6 130,714 - ABZR87_RS16825 0.22 -1.1 130,714 - ABZR87_RS16825 0.22 -0.7 130,989 + ABZR87_RS16825 0.50 -0.1 130,989 + ABZR87_RS16825 0.50 -1.7 130,989 + ABZR87_RS16825 0.50 +0.3 130,990 - ABZR87_RS16825 0.50 +1.2 130,990 - ABZR87_RS16825 0.50 -0.6 130,990 - ABZR87_RS16825 0.50 -1.2 130,992 + ABZR87_RS16825 0.51 +0.6 130,992 + ABZR87_RS16825 0.51 -0.9 130,993 - ABZR87_RS16825 0.51 +0.3 130,993 - ABZR87_RS16825 0.51 +1.1 130,993 - ABZR87_RS16825 0.51 +0.9 131,009 + ABZR87_RS16825 0.52 -0.1 131,009 + ABZR87_RS16825 0.52 +0.4 131,010 - ABZR87_RS16825 0.52 +0.2 131,061 + ABZR87_RS16825 0.58 +0.6 131,061 + ABZR87_RS16825 0.58 -1.3 131,061 + ABZR87_RS16825 0.58 +1.8 131,061 + ABZR87_RS16825 0.58 -0.4 131,061 + ABZR87_RS16825 0.58 -1.9 131,061 + ABZR87_RS16825 0.58 +1.2 131,061 + ABZR87_RS16825 0.58 -0.3 131,062 - ABZR87_RS16825 0.58 -0.1 131,062 - ABZR87_RS16825 0.58 +0.6 131,062 - ABZR87_RS16825 0.58 -0.2 131,062 - ABZR87_RS16825 0.58 +0.2 131,062 - ABZR87_RS16825 0.58 -0.2 131,062 - ABZR87_RS16825 0.58 +0.6 131,062 - ABZR87_RS16825 0.58 +1.6 131,062 - ABZR87_RS16825 0.58 +0.6 131,062 - ABZR87_RS16825 0.58 +1.1 131,062 - ABZR87_RS16825 0.58 +2.6 131,062 - ABZR87_RS16825 0.58 +0.8 131,062 - ABZR87_RS16825 0.58 -1.3
Or see this region's nucleotide sequence