Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11730

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11725 and ABZR87_RS11730 are separated by 9 nucleotidesABZR87_RS11730 and ABZR87_RS11735 are separated by 325 nucleotides ABZR87_RS11725: ABZR87_RS11725 - P1 family peptidase, at 2,486,368 to 2,487,393 _RS11725 ABZR87_RS11730: ABZR87_RS11730 - M55 family metallopeptidase, at 2,487,403 to 2,488,218 _RS11730 ABZR87_RS11735: ABZR87_RS11735 - chitin-binding domain-containing protein, at 2,488,544 to 2,488,909 _RS11735 Position (kb) 2487 2488 2489Strain fitness (log2 ratio) -1 0 1 2at 2486.794 kb on + strand, within ABZR87_RS11725at 2486.795 kb on - strand, within ABZR87_RS11725at 2486.916 kb on + strand, within ABZR87_RS11725at 2486.917 kb on - strand, within ABZR87_RS11725at 2487.107 kb on + strand, within ABZR87_RS11725at 2487.206 kb on - strand, within ABZR87_RS11725at 2487.208 kb on - strand, within ABZR87_RS11725at 2487.209 kb on - strand, within ABZR87_RS11725at 2487.652 kb on + strand, within ABZR87_RS11730at 2487.707 kb on - strand, within ABZR87_RS11730at 2487.985 kb on + strand, within ABZR87_RS11730at 2487.986 kb on - strand, within ABZR87_RS11730at 2488.161 kb on - strandat 2488.161 kb on - strandat 2488.173 kb on - strandat 2488.173 kb on - strandat 2488.450 kb on + strandat 2488.507 kb on + strandat 2488.584 kb on + strand, within ABZR87_RS11735

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,486,794 + ABZR87_RS11725 0.42 +0.8
2,486,795 - ABZR87_RS11725 0.42 +2.3
2,486,916 + ABZR87_RS11725 0.53 +1.8
2,486,917 - ABZR87_RS11725 0.54 +1.0
2,487,107 + ABZR87_RS11725 0.72 +0.5
2,487,206 - ABZR87_RS11725 0.82 +2.4
2,487,208 - ABZR87_RS11725 0.82 -0.9
2,487,209 - ABZR87_RS11725 0.82 +1.5
2,487,652 + ABZR87_RS11730 0.31 -0.3
2,487,707 - ABZR87_RS11730 0.37 -1.0
2,487,985 + ABZR87_RS11730 0.71 -0.3
2,487,986 - ABZR87_RS11730 0.71 +0.9
2,488,161 - -0.7
2,488,161 - +0.0
2,488,173 - -0.8
2,488,173 - +1.1
2,488,450 + -0.4
2,488,507 + -0.8
2,488,584 + ABZR87_RS11735 0.11 +1.3

Or see this region's nucleotide sequence