Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07940

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,687,320	+		ABZR87_RS07935	0.55	-2.1
1,687,321	-		ABZR87_RS07935	0.55	-1.8
1,687,354	+		ABZR87_RS07935	0.56	+1.6
1,687,354	+		ABZR87_RS07935	0.56	+0.6
1,687,355	-		ABZR87_RS07935	0.57	+0.1
1,687,355	-		ABZR87_RS07935	0.57	-0.4
1,687,360	+		ABZR87_RS07935	0.57	+0.5
1,687,360	+		ABZR87_RS07935	0.57	-1.4
1,687,360	+		ABZR87_RS07935	0.57	-0.9
1,687,360	+		ABZR87_RS07935	0.57	-1.8
1,687,360	+		ABZR87_RS07935	0.57	-0.4
1,687,360	+		ABZR87_RS07935	0.57	+0.1
1,687,361	-		ABZR87_RS07935	0.57	+0.5
1,687,361	-		ABZR87_RS07935	0.57	+0.1
1,687,470	+		ABZR87_RS07935	0.63	+0.0
1,687,516	+		ABZR87_RS07935	0.66	+0.1
1,687,517	-		ABZR87_RS07935	0.66	-0.1
1,687,517	-		ABZR87_RS07935	0.66	-0.9
1,687,609	+		ABZR87_RS07935	0.71	+0.7
1,687,610	-		ABZR87_RS07935	0.71	+1.6
1,687,610	-		ABZR87_RS07935	0.71	-1.5
1,687,610	-		ABZR87_RS07935	0.71	-0.9
1,687,942	+				+0.4
1,687,943	-				-0.6
1,688,262	-				-0.7
1,688,262	-				-0.6
1,688,372	+		ABZR87_RS07940	0.11	-0.3
1,688,372	+		ABZR87_RS07940	0.11	+0.6
1,688,372	+		ABZR87_RS07940	0.11	-1.5
1,688,372	+		ABZR87_RS07940	0.11	+0.7
1,688,373	-		ABZR87_RS07940	0.11	-0.7
1,688,373	-		ABZR87_RS07940	0.11	+0.9
1,688,373	-		ABZR87_RS07940	0.11	+1.0
1,688,460	-		ABZR87_RS07940	0.16	-1.0
1,688,460	-		ABZR87_RS07940	0.16	+0.1
1,688,658	+		ABZR87_RS07940	0.27	-1.4
1,688,658	+		ABZR87_RS07940	0.27	-0.2
1,688,658	+		ABZR87_RS07940	0.27	-0.4
1,688,659	-		ABZR87_RS07940	0.27	-0.0
1,688,659	-		ABZR87_RS07940	0.27	+1.4
1,688,659	-		ABZR87_RS07940	0.27	-0.1
1,689,111	+		ABZR87_RS07940	0.51	+0.9
1,689,269	+		ABZR87_RS07940	0.60	+0.2
1,689,269	+		ABZR87_RS07940	0.60	+0.5
1,689,269	+		ABZR87_RS07940	0.60	-0.3
1,689,270	-		ABZR87_RS07940	0.60	+0.1
1,689,270	-		ABZR87_RS07940	0.60	+0.3
1,689,270	-		ABZR87_RS07940	0.60	+1.4
1,689,270	-		ABZR87_RS07940	0.60	+2.2
1,689,270	-		ABZR87_RS07940	0.60	-0.3
1,689,270	-		ABZR87_RS07940	0.60	+0.6
1,689,273	+		ABZR87_RS07940	0.60	-1.1
1,689,273	+		ABZR87_RS07940	0.60	-0.4
1,689,274	-		ABZR87_RS07940	0.60	-0.2
1,689,274	-		ABZR87_RS07940	0.60	-1.1
1,689,274	-		ABZR87_RS07940	0.60	+0.2
1,689,484	-		ABZR87_RS07940	0.72	+0.8
1,689,484	-		ABZR87_RS07940	0.72	+0.6
1,689,654	+		ABZR87_RS07940	0.81	+0.1
1,689,654	+		ABZR87_RS07940	0.81	+1.9
1,689,654	+		ABZR87_RS07940	0.81	+2.1
1,689,654	+		ABZR87_RS07940	0.81	-0.2
1,689,655	-		ABZR87_RS07940	0.81	-0.8
1,689,655	-		ABZR87_RS07940	0.81	-1.1
1,689,655	-		ABZR87_RS07940	0.81	+1.3
1,689,717	+		ABZR87_RS07940	0.85	-0.7
1,689,718	-		ABZR87_RS07940	0.85	+0.9
1,689,819	+				+0.0
1,689,819	+				+0.6
1,689,820	-				-0.9
1,689,820	-				+0.8
1,689,820	-				+0.8
1,690,369	+		ABZR87_RS07945	0.57	-1.9
1,690,369	+		ABZR87_RS07945	0.57	-1.1
1,690,369	+		ABZR87_RS07945	0.57	+1.2
1,690,369	+		ABZR87_RS07945	0.57	-0.9
1,690,370	-		ABZR87_RS07945	0.57	+0.0
1,690,372	+		ABZR87_RS07945	0.57	-0.9
1,690,372	+		ABZR87_RS07945	0.57	+1.1
1,690,372	+		ABZR87_RS07945	0.57	-0.4
1,690,372	+		ABZR87_RS07945	0.57	+0.3
1,690,373	-		ABZR87_RS07945	0.57	+0.1
1,690,373	-		ABZR87_RS07945	0.57	+0.6
1,690,373	-		ABZR87_RS07945	0.57	-0.3
1,690,466	-		ABZR87_RS07945	0.72	-0.8
1,690,466	-		ABZR87_RS07945	0.72	-0.8
1,690,466	-		ABZR87_RS07945	0.72	+1.2
1,690,466	-		ABZR87_RS07945	0.72	-0.9
1,690,468	+		ABZR87_RS07945	0.72	+0.8
1,690,468	+		ABZR87_RS07945	0.72	-0.6
1,690,468	+		ABZR87_RS07945	0.72	-0.3
1,690,469	-		ABZR87_RS07945	0.72	-1.1
1,690,469	-		ABZR87_RS07945	0.72	-0.0
1,690,601	+				+0.1
1,690,648	+				-1.5
1,690,648	+				+3.4
1,690,648	+				-0.6
1,690,649	-				+1.5
1,690,757	+		ABZR87_RS07950	0.31	+2.1
1,690,757	+		ABZR87_RS07950	0.31	-0.6
1,690,757	+		ABZR87_RS07950	0.31	-1.2
1,690,757	+		ABZR87_RS07950	0.31	+1.4
1,690,757	+		ABZR87_RS07950	0.31	+1.5
1,690,757	+		ABZR87_RS07950	0.31	-0.7
1,690,757	+		ABZR87_RS07950	0.31	+0.6
1,690,757	+		ABZR87_RS07950	0.31	+0.9
1,690,758	-		ABZR87_RS07950	0.31	+0.6
1,690,758	-		ABZR87_RS07950	0.31	-0.1
1,690,758	-		ABZR87_RS07950	0.31	-0.1
1,690,758	-		ABZR87_RS07950	0.31	+0.8
1,690,758	-		ABZR87_RS07950	0.31	+0.7
1,690,758	-		ABZR87_RS07950	0.31	-2.7
1,690,758	-		ABZR87_RS07950	0.31	-1.8
1,690,758	-		ABZR87_RS07950	0.31	-2.5
1,690,758	-		ABZR87_RS07950	0.31	+0.5
1,690,758	-		ABZR87_RS07950	0.31	+2.9
1,690,758	-		ABZR87_RS07950	0.31	-0.5
1,690,763	-		ABZR87_RS07950	0.33	-0.7
1,690,763	-		ABZR87_RS07950	0.33	+1.1
1,690,763	-		ABZR87_RS07950	0.33	-2.0
1,690,763	-		ABZR87_RS07950	0.33	+0.6
1,690,767	+		ABZR87_RS07950	0.34	+0.4
1,690,767	+		ABZR87_RS07950	0.34	-0.4
1,690,767	+		ABZR87_RS07950	0.34	+2.8
1,690,778	+		ABZR87_RS07950	0.38	-0.2
1,690,779	-		ABZR87_RS07950	0.38	-2.5
1,690,779	-		ABZR87_RS07950	0.38	+0.9
1,690,779	-		ABZR87_RS07950	0.38	-2.0
1,690,779	-		ABZR87_RS07950	0.38	+0.6
1,690,779	-		ABZR87_RS07950	0.38	-0.5
1,690,779	-		ABZR87_RS07950	0.38	-0.6
1,690,811	+		ABZR87_RS07950	0.48	+1.5
1,690,812	-		ABZR87_RS07950	0.49	+0.2