Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07065 and ABZR87_RS07070 are separated by 30 nucleotides ABZR87_RS07070 and ABZR87_RS07075 are separated by 59 nucleotides ABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotides ABZR87_RS07080 and ABZR87_RS07085 are separated by 15 nucleotides
ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699
_RS07065
ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317
_RS07070
ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009
_RS07075
ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610
_RS07080
ABZR87_RS07085: ABZR87_RS07085 - KpsF/GutQ family sugar-phosphate isomerase, at 1,494,626 to 1,495,609
_RS07085
Position (kb) 1493
1494
1495 Strain fitness (log2 ratio) -2
-1
0
1 at 1492.700 kb on - strand at 1493.378 kb on + strand at 1494.061 kb on - strand at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.136 kb on - strand, within ABZR87_RS07080 at 1494.235 kb on - strand, within ABZR87_RS07080 at 1494.235 kb on - strand, within ABZR87_RS07080 at 1494.235 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080 at 1494.313 kb on - strand, within ABZR87_RS07080
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,492,700 - -0.5 1,493,378 + -0.3 1,494,061 - +0.1 1,494,136 - ABZR87_RS07080 0.20 +0.9 1,494,136 - ABZR87_RS07080 0.20 -2.0 1,494,136 - ABZR87_RS07080 0.20 +0.3 1,494,136 - ABZR87_RS07080 0.20 +0.5 1,494,136 - ABZR87_RS07080 0.20 -0.9 1,494,136 - ABZR87_RS07080 0.20 -2.5 1,494,235 - ABZR87_RS07080 0.37 -0.1 1,494,235 - ABZR87_RS07080 0.37 -0.1 1,494,235 - ABZR87_RS07080 0.37 +0.4 1,494,313 - ABZR87_RS07080 0.50 +0.3 1,494,313 - ABZR87_RS07080 0.50 -0.3 1,494,313 - ABZR87_RS07080 0.50 -0.6 1,494,313 - ABZR87_RS07080 0.50 -1.3
Or see this region's nucleotide sequence