Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06850

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06845 and ABZR87_RS06850 are separated by 69 nucleotidesABZR87_RS06850 and ABZR87_RS06855 are separated by 66 nucleotides ABZR87_RS06845: ABZR87_RS06845 - heme o synthase, at 1,448,943 to 1,449,884 _RS06845 ABZR87_RS06850: ABZR87_RS06850 - SCO family protein, at 1,449,954 to 1,450,559 _RS06850 ABZR87_RS06855: ABZR87_RS06855 - RNA polymerase sigma factor RpoH, at 1,450,626 to 1,451,555 _RS06855 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1449.009 kb on + strandat 1449.204 kb on - strand, within ABZR87_RS06845at 1449.351 kb on + strand, within ABZR87_RS06845at 1449.363 kb on + strand, within ABZR87_RS06845at 1449.363 kb on + strand, within ABZR87_RS06845at 1449.363 kb on + strand, within ABZR87_RS06845at 1449.363 kb on + strand, within ABZR87_RS06845at 1449.363 kb on + strand, within ABZR87_RS06845at 1449.503 kb on + strand, within ABZR87_RS06845at 1449.504 kb on - strand, within ABZR87_RS06845at 1449.538 kb on + strand, within ABZR87_RS06845at 1449.538 kb on + strand, within ABZR87_RS06845at 1449.538 kb on + strand, within ABZR87_RS06845at 1449.538 kb on + strand, within ABZR87_RS06845at 1449.540 kb on + strand, within ABZR87_RS06845at 1449.556 kb on - strand, within ABZR87_RS06845at 1449.556 kb on - strand, within ABZR87_RS06845at 1449.571 kb on + strand, within ABZR87_RS06845at 1449.572 kb on - strand, within ABZR87_RS06845at 1449.572 kb on - strand, within ABZR87_RS06845at 1449.603 kb on + strand, within ABZR87_RS06845at 1449.603 kb on + strand, within ABZR87_RS06845at 1449.627 kb on + strand, within ABZR87_RS06845at 1449.627 kb on + strand, within ABZR87_RS06845at 1449.628 kb on - strand, within ABZR87_RS06845at 1449.628 kb on - strand, within ABZR87_RS06845at 1449.670 kb on - strand, within ABZR87_RS06845at 1449.684 kb on + strand, within ABZR87_RS06845at 1449.685 kb on - strand, within ABZR87_RS06845at 1449.685 kb on - strand, within ABZR87_RS06845at 1449.686 kb on + strand, within ABZR87_RS06845at 1449.687 kb on - strand, within ABZR87_RS06845at 1449.687 kb on - strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.691 kb on - strand, within ABZR87_RS06845at 1449.691 kb on - strand, within ABZR87_RS06845at 1449.733 kb on - strand, within ABZR87_RS06845at 1449.733 kb on - strand, within ABZR87_RS06845at 1449.747 kb on + strand, within ABZR87_RS06845at 1449.748 kb on - strand, within ABZR87_RS06845at 1449.748 kb on - strand, within ABZR87_RS06845at 1449.757 kb on - strand, within ABZR87_RS06845at 1449.801 kb on + strandat 1449.801 kb on + strandat 1449.801 kb on + strandat 1449.802 kb on - strandat 1449.840 kb on + strandat 1449.840 kb on + strandat 1449.841 kb on - strandat 1449.841 kb on - strandat 1450.167 kb on + strand, within ABZR87_RS06850at 1450.167 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.401 kb on + strand, within ABZR87_RS06850at 1450.401 kb on + strand, within ABZR87_RS06850at 1450.401 kb on + strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.627 kb on + strandat 1450.628 kb on - strandat 1451.149 kb on + strand, within ABZR87_RS06855at 1451.294 kb on - strand, within ABZR87_RS06855at 1451.337 kb on + strand, within ABZR87_RS06855at 1451.439 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,449,009 + -0.4
1,449,204 - ABZR87_RS06845 0.28 -1.7
1,449,351 + ABZR87_RS06845 0.43 -1.9
1,449,363 + ABZR87_RS06845 0.45 -0.2
1,449,363 + ABZR87_RS06845 0.45 -2.2
1,449,363 + ABZR87_RS06845 0.45 -2.3
1,449,363 + ABZR87_RS06845 0.45 -1.3
1,449,363 + ABZR87_RS06845 0.45 -1.5
1,449,503 + ABZR87_RS06845 0.59 -1.6
1,449,504 - ABZR87_RS06845 0.60 +0.3
1,449,538 + ABZR87_RS06845 0.63 -2.1
1,449,538 + ABZR87_RS06845 0.63 -2.3
1,449,538 + ABZR87_RS06845 0.63 +0.3
1,449,538 + ABZR87_RS06845 0.63 -1.7
1,449,540 + ABZR87_RS06845 0.63 +0.4
1,449,556 - ABZR87_RS06845 0.65 -0.6
1,449,556 - ABZR87_RS06845 0.65 -1.6
1,449,571 + ABZR87_RS06845 0.67 -0.3
1,449,572 - ABZR87_RS06845 0.67 -1.4
1,449,572 - ABZR87_RS06845 0.67 -0.4
1,449,603 + ABZR87_RS06845 0.70 -0.5
1,449,603 + ABZR87_RS06845 0.70 -0.4
1,449,627 + ABZR87_RS06845 0.73 -1.8
1,449,627 + ABZR87_RS06845 0.73 +0.2
1,449,628 - ABZR87_RS06845 0.73 -1.0
1,449,628 - ABZR87_RS06845 0.73 +0.1
1,449,670 - ABZR87_RS06845 0.77 -2.9
1,449,684 + ABZR87_RS06845 0.79 +0.3
1,449,685 - ABZR87_RS06845 0.79 +0.8
1,449,685 - ABZR87_RS06845 0.79 -1.7
1,449,686 + ABZR87_RS06845 0.79 -1.8
1,449,687 - ABZR87_RS06845 0.79 -0.9
1,449,687 - ABZR87_RS06845 0.79 -0.6
1,449,690 + ABZR87_RS06845 0.79 -0.2
1,449,690 + ABZR87_RS06845 0.79 -0.4
1,449,690 + ABZR87_RS06845 0.79 -2.2
1,449,690 + ABZR87_RS06845 0.79 -0.2
1,449,691 - ABZR87_RS06845 0.79 -1.0
1,449,691 - ABZR87_RS06845 0.79 -0.9
1,449,733 - ABZR87_RS06845 0.84 -0.2
1,449,733 - ABZR87_RS06845 0.84 -1.6
1,449,747 + ABZR87_RS06845 0.85 -0.4
1,449,748 - ABZR87_RS06845 0.85 -0.5
1,449,748 - ABZR87_RS06845 0.85 +0.2
1,449,757 - ABZR87_RS06845 0.86 -1.2
1,449,801 + -1.7
1,449,801 + -0.7
1,449,801 + +0.0
1,449,802 - -2.2
1,449,840 + +2.4
1,449,840 + -1.5
1,449,841 - -2.1
1,449,841 - -0.4
1,450,167 + ABZR87_RS06850 0.35 -1.5
1,450,167 + ABZR87_RS06850 0.35 -0.1
1,450,311 + ABZR87_RS06850 0.59 -0.6
1,450,311 + ABZR87_RS06850 0.59 +0.5
1,450,311 + ABZR87_RS06850 0.59 +0.5
1,450,311 + ABZR87_RS06850 0.59 +1.4
1,450,311 + ABZR87_RS06850 0.59 -0.1
1,450,311 + ABZR87_RS06850 0.59 -1.6
1,450,312 - ABZR87_RS06850 0.59 -0.5
1,450,312 - ABZR87_RS06850 0.59 +0.1
1,450,312 - ABZR87_RS06850 0.59 +0.4
1,450,312 - ABZR87_RS06850 0.59 -0.1
1,450,401 + ABZR87_RS06850 0.74 +1.6
1,450,401 + ABZR87_RS06850 0.74 +0.5
1,450,401 + ABZR87_RS06850 0.74 -0.7
1,450,402 - ABZR87_RS06850 0.74 -0.5
1,450,402 - ABZR87_RS06850 0.74 -1.6
1,450,402 - ABZR87_RS06850 0.74 +2.4
1,450,402 - ABZR87_RS06850 0.74 -0.2
1,450,402 - ABZR87_RS06850 0.74 -0.2
1,450,434 + ABZR87_RS06850 0.79 -0.8
1,450,434 + ABZR87_RS06850 0.79 -1.5
1,450,434 + ABZR87_RS06850 0.79 +0.1
1,450,434 + ABZR87_RS06850 0.79 +0.2
1,450,434 + ABZR87_RS06850 0.79 -1.2
1,450,435 - ABZR87_RS06850 0.79 -1.5
1,450,435 - ABZR87_RS06850 0.79 +0.4
1,450,435 - ABZR87_RS06850 0.79 +1.7
1,450,435 - ABZR87_RS06850 0.79 -1.6
1,450,435 - ABZR87_RS06850 0.79 +0.4
1,450,461 + ABZR87_RS06850 0.84 +0.8
1,450,461 + ABZR87_RS06850 0.84 +2.4
1,450,461 + ABZR87_RS06850 0.84 -1.1
1,450,461 + ABZR87_RS06850 0.84 -0.8
1,450,461 + ABZR87_RS06850 0.84 +0.4
1,450,461 + ABZR87_RS06850 0.84 +2.4
1,450,461 + ABZR87_RS06850 0.84 -1.1
1,450,461 + ABZR87_RS06850 0.84 +0.4
1,450,461 + ABZR87_RS06850 0.84 -1.2
1,450,462 - ABZR87_RS06850 0.84 +0.3
1,450,462 - ABZR87_RS06850 0.84 +0.4
1,450,462 - ABZR87_RS06850 0.84 -0.5
1,450,462 - ABZR87_RS06850 0.84 -2.0
1,450,627 + +0.6
1,450,628 - -0.9
1,451,149 + ABZR87_RS06855 0.56 +3.4
1,451,294 - ABZR87_RS06855 0.72 +1.4
1,451,337 + ABZR87_RS06855 0.76 +2.4
1,451,439 - ABZR87_RS06855 0.87 +1.8
1,451,441 - ABZR87_RS06855 0.88 -1.9
1,451,441 - ABZR87_RS06855 0.88 -1.1
1,451,441 - ABZR87_RS06855 0.88 -0.0
1,451,441 - ABZR87_RS06855 0.88 +2.4
1,451,441 - ABZR87_RS06855 0.88 -2.4

Or see this region's nucleotide sequence