Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06085 and ABZR87_RS06090 are separated by 12 nucleotides ABZR87_RS06090 and ABZR87_RS06095 overlap by 11 nucleotides ABZR87_RS06095 and ABZR87_RS06100 are separated by 4 nucleotides ABZR87_RS06100 and ABZR87_RS06105 are separated by 4 nucleotides ABZR87_RS06105 and ABZR87_RS06110 are separated by 57 nucleotides
ABZR87_RS06085: ABZR87_RS06085 - GntR family transcriptional regulator, at 1,300,071 to 1,300,793
_RS06085
ABZR87_RS06090: ABZR87_RS06090 - YoaK family protein, at 1,300,806 to 1,301,513
_RS06090
ABZR87_RS06095: ABZR87_RS06095 - amidohydrolase, at 1,301,503 to 1,303,341
_RS06095
ABZR87_RS06100: ABZR87_RS06100 - DoxX family protein, at 1,303,346 to 1,303,777
_RS06100
ABZR87_RS06105: ABZR87_RS06105 - XapX domain-containing protein, at 1,303,782 to 1,304,102
_RS06105
ABZR87_RS06110: ABZR87_RS06110 - alpha/beta hydrolase, at 1,304,160 to 1,304,981
_RS06110
Position (kb) 1301
1302
1303
1304 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 1300.596 kb on + strand, within ABZR87_RS06085 at 1300.596 kb on + strand, within ABZR87_RS06085 at 1300.597 kb on - strand, within ABZR87_RS06085 at 1300.597 kb on - strand, within ABZR87_RS06085 at 1300.597 kb on - strand, within ABZR87_RS06085 at 1300.597 kb on - strand, within ABZR87_RS06085 at 1300.713 kb on + strand, within ABZR87_RS06085 at 1300.713 kb on + strand, within ABZR87_RS06085 at 1300.713 kb on + strand, within ABZR87_RS06085 at 1300.713 kb on + strand, within ABZR87_RS06085 at 1300.713 kb on + strand, within ABZR87_RS06085 at 1300.713 kb on + strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.714 kb on - strand, within ABZR87_RS06085 at 1300.807 kb on + strand at 1300.970 kb on + strand, within ABZR87_RS06090 at 1300.971 kb on - strand, within ABZR87_RS06090 at 1300.984 kb on - strand, within ABZR87_RS06090 at 1300.984 kb on - strand, within ABZR87_RS06090 at 1301.419 kb on + strand, within ABZR87_RS06090 at 1301.419 kb on + strand, within ABZR87_RS06090 at 1301.420 kb on - strand, within ABZR87_RS06090 at 1301.916 kb on - strand, within ABZR87_RS06095 at 1301.916 kb on - strand, within ABZR87_RS06095 at 1301.916 kb on - strand, within ABZR87_RS06095 at 1301.954 kb on + strand, within ABZR87_RS06095 at 1301.996 kb on + strand, within ABZR87_RS06095 at 1301.996 kb on + strand, within ABZR87_RS06095 at 1301.997 kb on - strand, within ABZR87_RS06095 at 1302.017 kb on + strand, within ABZR87_RS06095 at 1302.017 kb on + strand, within ABZR87_RS06095 at 1302.131 kb on + strand, within ABZR87_RS06095 at 1302.131 kb on + strand, within ABZR87_RS06095 at 1302.131 kb on + strand, within ABZR87_RS06095 at 1302.132 kb on - strand, within ABZR87_RS06095 at 1302.132 kb on - strand, within ABZR87_RS06095 at 1302.311 kb on + strand, within ABZR87_RS06095 at 1302.311 kb on + strand, within ABZR87_RS06095 at 1302.311 kb on + strand, within ABZR87_RS06095 at 1302.495 kb on - strand, within ABZR87_RS06095 at 1302.563 kb on + strand, within ABZR87_RS06095 at 1302.563 kb on + strand, within ABZR87_RS06095 at 1302.563 kb on + strand, within ABZR87_RS06095 at 1302.564 kb on - strand, within ABZR87_RS06095 at 1302.564 kb on - strand, within ABZR87_RS06095 at 1302.564 kb on - strand, within ABZR87_RS06095 at 1302.617 kb on + strand, within ABZR87_RS06095 at 1302.618 kb on - strand, within ABZR87_RS06095 at 1302.629 kb on + strand, within ABZR87_RS06095 at 1302.630 kb on - strand, within ABZR87_RS06095 at 1302.630 kb on - strand, within ABZR87_RS06095 at 1302.758 kb on + strand, within ABZR87_RS06095 at 1302.758 kb on + strand, within ABZR87_RS06095 at 1302.759 kb on - strand, within ABZR87_RS06095 at 1302.861 kb on - strand, within ABZR87_RS06095 at 1302.861 kb on - strand, within ABZR87_RS06095 at 1303.350 kb on + strand at 1303.629 kb on + strand, within ABZR87_RS06100 at 1303.630 kb on - strand, within ABZR87_RS06100 at 1303.630 kb on - strand, within ABZR87_RS06100 at 1303.630 kb on - strand, within ABZR87_RS06100 at 1303.630 kb on - strand, within ABZR87_RS06100 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.050 kb on + strand, within ABZR87_RS06105 at 1304.051 kb on + strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.051 kb on - strand, within ABZR87_RS06105 at 1304.092 kb on + strand at 1304.092 kb on + strand at 1304.092 kb on + strand at 1304.092 kb on + strand at 1304.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,300,596 + ABZR87_RS06085 0.73 -0.1 1,300,596 + ABZR87_RS06085 0.73 -0.3 1,300,597 - ABZR87_RS06085 0.73 -1.8 1,300,597 - ABZR87_RS06085 0.73 -0.0 1,300,597 - ABZR87_RS06085 0.73 +1.0 1,300,597 - ABZR87_RS06085 0.73 +0.3 1,300,713 + ABZR87_RS06085 0.89 +1.6 1,300,713 + ABZR87_RS06085 0.89 -0.4 1,300,713 + ABZR87_RS06085 0.89 -0.9 1,300,713 + ABZR87_RS06085 0.89 -1.1 1,300,713 + ABZR87_RS06085 0.89 +0.1 1,300,713 + ABZR87_RS06085 0.89 +2.3 1,300,714 - ABZR87_RS06085 0.89 +0.5 1,300,714 - ABZR87_RS06085 0.89 -0.5 1,300,714 - ABZR87_RS06085 0.89 +1.1 1,300,714 - ABZR87_RS06085 0.89 +0.1 1,300,714 - ABZR87_RS06085 0.89 -1.2 1,300,714 - ABZR87_RS06085 0.89 -0.2 1,300,714 - ABZR87_RS06085 0.89 -2.0 1,300,714 - ABZR87_RS06085 0.89 -1.0 1,300,714 - ABZR87_RS06085 0.89 +1.7 1,300,807 + -1.4 1,300,970 + ABZR87_RS06090 0.23 +1.7 1,300,971 - ABZR87_RS06090 0.23 -0.4 1,300,984 - ABZR87_RS06090 0.25 +0.9 1,300,984 - ABZR87_RS06090 0.25 -0.3 1,301,419 + ABZR87_RS06090 0.87 -0.6 1,301,419 + ABZR87_RS06090 0.87 -0.1 1,301,420 - ABZR87_RS06090 0.87 -0.4 1,301,916 - ABZR87_RS06095 0.22 +1.3 1,301,916 - ABZR87_RS06095 0.22 -0.1 1,301,916 - ABZR87_RS06095 0.22 -1.2 1,301,954 + ABZR87_RS06095 0.25 -0.3 1,301,996 + ABZR87_RS06095 0.27 +0.6 1,301,996 + ABZR87_RS06095 0.27 -0.8 1,301,997 - ABZR87_RS06095 0.27 -0.0 1,302,017 + ABZR87_RS06095 0.28 +0.9 1,302,017 + ABZR87_RS06095 0.28 -0.1 1,302,131 + ABZR87_RS06095 0.34 +1.0 1,302,131 + ABZR87_RS06095 0.34 -0.7 1,302,131 + ABZR87_RS06095 0.34 -0.4 1,302,132 - ABZR87_RS06095 0.34 -0.7 1,302,132 - ABZR87_RS06095 0.34 +0.7 1,302,311 + ABZR87_RS06095 0.44 +0.5 1,302,311 + ABZR87_RS06095 0.44 -0.3 1,302,311 + ABZR87_RS06095 0.44 +1.0 1,302,495 - ABZR87_RS06095 0.54 -0.9 1,302,563 + ABZR87_RS06095 0.58 +0.3 1,302,563 + ABZR87_RS06095 0.58 +10.3 1,302,563 + ABZR87_RS06095 0.58 -0.5 1,302,564 - ABZR87_RS06095 0.58 +0.6 1,302,564 - ABZR87_RS06095 0.58 +2.1 1,302,564 - ABZR87_RS06095 0.58 -0.5 1,302,617 + ABZR87_RS06095 0.61 +0.5 1,302,618 - ABZR87_RS06095 0.61 +0.7 1,302,629 + ABZR87_RS06095 0.61 -2.0 1,302,630 - ABZR87_RS06095 0.61 +1.3 1,302,630 - ABZR87_RS06095 0.61 -0.6 1,302,758 + ABZR87_RS06095 0.68 -1.0 1,302,758 + ABZR87_RS06095 0.68 -0.0 1,302,759 - ABZR87_RS06095 0.68 +0.3 1,302,861 - ABZR87_RS06095 0.74 +0.3 1,302,861 - ABZR87_RS06095 0.74 -0.8 1,303,350 + -1.6 1,303,629 + ABZR87_RS06100 0.66 +1.7 1,303,630 - ABZR87_RS06100 0.66 -0.3 1,303,630 - ABZR87_RS06100 0.66 -1.5 1,303,630 - ABZR87_RS06100 0.66 -2.2 1,303,630 - ABZR87_RS06100 0.66 -0.3 1,304,050 + ABZR87_RS06105 0.83 -2.1 1,304,050 + ABZR87_RS06105 0.83 -1.7 1,304,050 + ABZR87_RS06105 0.83 +6.4 1,304,050 + ABZR87_RS06105 0.83 +0.2 1,304,050 + ABZR87_RS06105 0.83 -0.3 1,304,050 + ABZR87_RS06105 0.83 -0.9 1,304,050 + ABZR87_RS06105 0.83 +0.5 1,304,050 + ABZR87_RS06105 0.83 -0.0 1,304,050 + ABZR87_RS06105 0.83 -0.5 1,304,050 + ABZR87_RS06105 0.83 +2.6 1,304,050 + ABZR87_RS06105 0.83 -0.1 1,304,051 + ABZR87_RS06105 0.84 -0.7 1,304,051 - ABZR87_RS06105 0.84 -0.3 1,304,051 - ABZR87_RS06105 0.84 +2.6 1,304,051 - ABZR87_RS06105 0.84 +0.7 1,304,051 - ABZR87_RS06105 0.84 -0.3 1,304,051 - ABZR87_RS06105 0.84 -0.1 1,304,051 - ABZR87_RS06105 0.84 +0.1 1,304,051 - ABZR87_RS06105 0.84 +0.5 1,304,051 - ABZR87_RS06105 0.84 -1.0 1,304,051 - ABZR87_RS06105 0.84 +1.3 1,304,051 - ABZR87_RS06105 0.84 -0.8 1,304,051 - ABZR87_RS06105 0.84 +0.7 1,304,051 - ABZR87_RS06105 0.84 -0.1 1,304,092 + +2.3 1,304,092 + +0.6 1,304,092 + +0.7 1,304,092 + +0.7 1,304,093 - -2.0
Or see this region's nucleotide sequence