Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05825

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05820 and ABZR87_RS05825 are separated by 173 nucleotidesABZR87_RS05825 and ABZR87_RS05830 are separated by 165 nucleotides ABZR87_RS05820: ABZR87_RS05820 - FAD-binding oxidoreductase, at 1,240,046 to 1,241,371 _RS05820 ABZR87_RS05825: ABZR87_RS05825 - low-specificity L-threonine aldolase, at 1,241,545 to 1,242,609 _RS05825 ABZR87_RS05830: ABZR87_RS05830 - porin, at 1,242,775 to 1,243,899 _RS05830 Position (kb) 1241 1242 1243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1240.767 kb on + strand, within ABZR87_RS05820at 1240.767 kb on + strand, within ABZR87_RS05820at 1240.767 kb on + strand, within ABZR87_RS05820at 1240.767 kb on + strand, within ABZR87_RS05820at 1240.767 kb on + strand, within ABZR87_RS05820at 1240.768 kb on - strand, within ABZR87_RS05820at 1240.768 kb on - strand, within ABZR87_RS05820at 1240.768 kb on - strand, within ABZR87_RS05820at 1240.805 kb on - strand, within ABZR87_RS05820at 1240.823 kb on - strand, within ABZR87_RS05820at 1240.844 kb on + strand, within ABZR87_RS05820at 1241.155 kb on + strand, within ABZR87_RS05820at 1241.156 kb on - strand, within ABZR87_RS05820at 1241.156 kb on - strand, within ABZR87_RS05820at 1241.318 kb on + strandat 1241.318 kb on + strandat 1241.318 kb on + strandat 1241.411 kb on - strandat 1241.416 kb on + strandat 1241.589 kb on + strandat 1241.589 kb on + strandat 1241.589 kb on + strandat 1241.589 kb on + strandat 1241.590 kb on - strandat 1241.590 kb on - strandat 1241.590 kb on - strandat 1241.590 kb on - strandat 1241.590 kb on - strandat 1241.590 kb on - strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.630 kb on + strandat 1241.631 kb on - strandat 1241.631 kb on - strandat 1241.631 kb on - strandat 1241.631 kb on - strandat 1241.633 kb on + strandat 1241.660 kb on + strand, within ABZR87_RS05825at 1241.661 kb on - strand, within ABZR87_RS05825at 1241.727 kb on + strand, within ABZR87_RS05825at 1241.778 kb on - strand, within ABZR87_RS05825at 1241.793 kb on + strand, within ABZR87_RS05825at 1241.793 kb on + strand, within ABZR87_RS05825at 1241.794 kb on - strand, within ABZR87_RS05825at 1241.972 kb on + strand, within ABZR87_RS05825at 1241.972 kb on + strand, within ABZR87_RS05825at 1241.972 kb on + strand, within ABZR87_RS05825at 1241.973 kb on - strand, within ABZR87_RS05825at 1241.973 kb on - strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.986 kb on + strand, within ABZR87_RS05825at 1241.987 kb on - strand, within ABZR87_RS05825at 1241.987 kb on - strand, within ABZR87_RS05825at 1242.417 kb on + strand, within ABZR87_RS05825at 1242.418 kb on - strand, within ABZR87_RS05825at 1242.505 kb on + strandat 1242.505 kb on + strandat 1242.505 kb on + strandat 1242.505 kb on + strandat 1242.505 kb on + strandat 1242.506 kb on - strandat 1242.506 kb on - strandat 1242.585 kb on + strandat 1242.639 kb on + strandat 1242.703 kb on - strandat 1242.703 kb on - strandat 1242.802 kb on + strandat 1242.802 kb on + strandat 1242.802 kb on + strandat 1242.802 kb on + strandat 1242.802 kb on + strandat 1242.803 kb on - strandat 1242.803 kb on - strandat 1242.803 kb on - strandat 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.899 kb on + strand, within ABZR87_RS05830at 1242.900 kb on - strand, within ABZR87_RS05830at 1242.900 kb on - strand, within ABZR87_RS05830at 1242.900 kb on - strand, within ABZR87_RS05830at 1242.900 kb on - strand, within ABZR87_RS05830at 1242.900 kb on - strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.926 kb on + strand, within ABZR87_RS05830at 1242.927 kb on - strand, within ABZR87_RS05830at 1242.927 kb on - strand, within ABZR87_RS05830at 1242.927 kb on - strand, within ABZR87_RS05830at 1242.927 kb on - strand, within ABZR87_RS05830at 1242.927 kb on - strand, within ABZR87_RS05830at 1243.001 kb on + strand, within ABZR87_RS05830at 1243.001 kb on + strand, within ABZR87_RS05830at 1243.002 kb on - strand, within ABZR87_RS05830at 1243.002 kb on - strand, within ABZR87_RS05830at 1243.002 kb on - strand, within ABZR87_RS05830at 1243.002 kb on - strand, within ABZR87_RS05830at 1243.002 kb on - strand, within ABZR87_RS05830at 1243.038 kb on - strand, within ABZR87_RS05830at 1243.038 kb on - strand, within ABZR87_RS05830at 1243.196 kb on + strand, within ABZR87_RS05830at 1243.196 kb on + strand, within ABZR87_RS05830at 1243.196 kb on + strand, within ABZR87_RS05830at 1243.196 kb on + strand, within ABZR87_RS05830at 1243.197 kb on - strand, within ABZR87_RS05830at 1243.197 kb on - strand, within ABZR87_RS05830at 1243.199 kb on + strand, within ABZR87_RS05830at 1243.200 kb on - strand, within ABZR87_RS05830at 1243.200 kb on - strand, within ABZR87_RS05830at 1243.200 kb on - strand, within ABZR87_RS05830at 1243.228 kb on - strand, within ABZR87_RS05830at 1243.228 kb on - strand, within ABZR87_RS05830at 1243.229 kb on + strand, within ABZR87_RS05830at 1243.229 kb on + strand, within ABZR87_RS05830at 1243.230 kb on - strand, within ABZR87_RS05830at 1243.322 kb on + strand, within ABZR87_RS05830at 1243.322 kb on + strand, within ABZR87_RS05830at 1243.322 kb on + strand, within ABZR87_RS05830at 1243.323 kb on - strand, within ABZR87_RS05830at 1243.323 kb on - strand, within ABZR87_RS05830at 1243.385 kb on + strand, within ABZR87_RS05830at 1243.385 kb on + strand, within ABZR87_RS05830at 1243.385 kb on + strand, within ABZR87_RS05830at 1243.386 kb on - strand, within ABZR87_RS05830at 1243.386 kb on - strand, within ABZR87_RS05830at 1243.424 kb on + strand, within ABZR87_RS05830at 1243.424 kb on + strand, within ABZR87_RS05830at 1243.424 kb on + strand, within ABZR87_RS05830at 1243.443 kb on - strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.473 kb on + strand, within ABZR87_RS05830at 1243.474 kb on - strand, within ABZR87_RS05830at 1243.474 kb on - strand, within ABZR87_RS05830at 1243.474 kb on - strand, within ABZR87_RS05830at 1243.474 kb on - strand, within ABZR87_RS05830at 1243.484 kb on + strand, within ABZR87_RS05830at 1243.484 kb on + strand, within ABZR87_RS05830at 1243.485 kb on - strand, within ABZR87_RS05830at 1243.485 kb on - strand, within ABZR87_RS05830at 1243.526 kb on + strand, within ABZR87_RS05830at 1243.527 kb on - strand, within ABZR87_RS05830

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,240,767 + ABZR87_RS05820 0.54 -0.7
1,240,767 + ABZR87_RS05820 0.54 +0.6
1,240,767 + ABZR87_RS05820 0.54 +0.3
1,240,767 + ABZR87_RS05820 0.54 +1.1
1,240,767 + ABZR87_RS05820 0.54 -0.5
1,240,768 - ABZR87_RS05820 0.54 -0.3
1,240,768 - ABZR87_RS05820 0.54 +0.6
1,240,768 - ABZR87_RS05820 0.54 +0.3
1,240,805 - ABZR87_RS05820 0.57 -0.8
1,240,823 - ABZR87_RS05820 0.59 +2.0
1,240,844 + ABZR87_RS05820 0.60 -1.0
1,241,155 + ABZR87_RS05820 0.84 +0.3
1,241,156 - ABZR87_RS05820 0.84 -1.5
1,241,156 - ABZR87_RS05820 0.84 -0.7
1,241,318 + +0.8
1,241,318 + -0.8
1,241,318 + -1.1
1,241,411 - -0.7
1,241,416 + -0.0
1,241,589 + -0.7
1,241,589 + -1.6
1,241,589 + -2.3
1,241,589 + -0.2
1,241,590 - -1.2
1,241,590 - +0.6
1,241,590 - -0.7
1,241,590 - +2.0
1,241,590 - -0.2
1,241,590 - -1.6
1,241,630 + -1.1
1,241,630 + +0.9
1,241,630 + -0.4
1,241,630 + +0.7
1,241,630 + +0.8
1,241,630 + +0.5
1,241,630 + -0.9
1,241,630 + -1.7
1,241,631 - -0.1
1,241,631 - -0.1
1,241,631 - -0.7
1,241,631 - -1.3
1,241,633 + -0.3
1,241,660 + ABZR87_RS05825 0.11 +0.7
1,241,661 - ABZR87_RS05825 0.11 +1.7
1,241,727 + ABZR87_RS05825 0.17 -0.2
1,241,778 - ABZR87_RS05825 0.22 +0.8
1,241,793 + ABZR87_RS05825 0.23 +1.0
1,241,793 + ABZR87_RS05825 0.23 +0.7
1,241,794 - ABZR87_RS05825 0.23 +0.3
1,241,972 + ABZR87_RS05825 0.40 -1.4
1,241,972 + ABZR87_RS05825 0.40 -1.0
1,241,972 + ABZR87_RS05825 0.40 -0.5
1,241,973 - ABZR87_RS05825 0.40 -0.1
1,241,973 - ABZR87_RS05825 0.40 +0.2
1,241,986 + ABZR87_RS05825 0.41 -0.5
1,241,986 + ABZR87_RS05825 0.41 +1.2
1,241,986 + ABZR87_RS05825 0.41 +0.0
1,241,986 + ABZR87_RS05825 0.41 -0.5
1,241,986 + ABZR87_RS05825 0.41 -0.1
1,241,986 + ABZR87_RS05825 0.41 +0.4
1,241,986 + ABZR87_RS05825 0.41 +0.6
1,241,987 - ABZR87_RS05825 0.42 -1.8
1,241,987 - ABZR87_RS05825 0.42 +0.4
1,242,417 + ABZR87_RS05825 0.82 -1.5
1,242,418 - ABZR87_RS05825 0.82 +0.5
1,242,505 + +0.5
1,242,505 + +0.0
1,242,505 + -0.4
1,242,505 + +0.6
1,242,505 + +1.3
1,242,506 - +0.3
1,242,506 - +0.2
1,242,585 + +2.7
1,242,639 + -2.9
1,242,703 - +0.1
1,242,703 - +0.8
1,242,802 + -2.1
1,242,802 + -1.4
1,242,802 + -1.2
1,242,802 + -0.8
1,242,802 + +0.2
1,242,803 - +0.3
1,242,803 - +0.2
1,242,803 - +1.4
1,242,899 + ABZR87_RS05830 0.11 +0.7
1,242,899 + ABZR87_RS05830 0.11 +1.7
1,242,899 + ABZR87_RS05830 0.11 -0.7
1,242,899 + ABZR87_RS05830 0.11 +1.9
1,242,899 + ABZR87_RS05830 0.11 +1.9
1,242,899 + ABZR87_RS05830 0.11 -1.2
1,242,899 + ABZR87_RS05830 0.11 -0.4
1,242,899 + ABZR87_RS05830 0.11 -1.7
1,242,900 - ABZR87_RS05830 0.11 +0.1
1,242,900 - ABZR87_RS05830 0.11 -0.2
1,242,900 - ABZR87_RS05830 0.11 +0.7
1,242,900 - ABZR87_RS05830 0.11 -1.1
1,242,900 - ABZR87_RS05830 0.11 -1.2
1,242,926 + ABZR87_RS05830 0.13 -0.2
1,242,926 + ABZR87_RS05830 0.13 -0.4
1,242,926 + ABZR87_RS05830 0.13 -0.9
1,242,926 + ABZR87_RS05830 0.13 -0.0
1,242,926 + ABZR87_RS05830 0.13 -0.3
1,242,926 + ABZR87_RS05830 0.13 -0.3
1,242,926 + ABZR87_RS05830 0.13 -0.4
1,242,927 - ABZR87_RS05830 0.14 -1.4
1,242,927 - ABZR87_RS05830 0.14 +1.0
1,242,927 - ABZR87_RS05830 0.14 +1.4
1,242,927 - ABZR87_RS05830 0.14 -1.9
1,242,927 - ABZR87_RS05830 0.14 -0.6
1,243,001 + ABZR87_RS05830 0.20 -0.0
1,243,001 + ABZR87_RS05830 0.20 +1.3
1,243,002 - ABZR87_RS05830 0.20 +0.1
1,243,002 - ABZR87_RS05830 0.20 +1.8
1,243,002 - ABZR87_RS05830 0.20 +0.0
1,243,002 - ABZR87_RS05830 0.20 -0.2
1,243,002 - ABZR87_RS05830 0.20 -0.2
1,243,038 - ABZR87_RS05830 0.23 -0.9
1,243,038 - ABZR87_RS05830 0.23 -0.2
1,243,196 + ABZR87_RS05830 0.37 +0.4
1,243,196 + ABZR87_RS05830 0.37 +1.9
1,243,196 + ABZR87_RS05830 0.37 -0.9
1,243,196 + ABZR87_RS05830 0.37 +0.5
1,243,197 - ABZR87_RS05830 0.38 +0.8
1,243,197 - ABZR87_RS05830 0.38 -0.3
1,243,199 + ABZR87_RS05830 0.38 +0.3
1,243,200 - ABZR87_RS05830 0.38 +0.4
1,243,200 - ABZR87_RS05830 0.38 +0.1
1,243,200 - ABZR87_RS05830 0.38 -0.5
1,243,228 - ABZR87_RS05830 0.40 +1.3
1,243,228 - ABZR87_RS05830 0.40 +0.8
1,243,229 + ABZR87_RS05830 0.40 +0.7
1,243,229 + ABZR87_RS05830 0.40 +0.5
1,243,230 - ABZR87_RS05830 0.40 -2.1
1,243,322 + ABZR87_RS05830 0.49 +1.4
1,243,322 + ABZR87_RS05830 0.49 +0.4
1,243,322 + ABZR87_RS05830 0.49 +1.0
1,243,323 - ABZR87_RS05830 0.49 +0.7
1,243,323 - ABZR87_RS05830 0.49 -2.7
1,243,385 + ABZR87_RS05830 0.54 +0.3
1,243,385 + ABZR87_RS05830 0.54 +2.7
1,243,385 + ABZR87_RS05830 0.54 -0.6
1,243,386 - ABZR87_RS05830 0.54 -0.3
1,243,386 - ABZR87_RS05830 0.54 -1.0
1,243,424 + ABZR87_RS05830 0.58 -1.0
1,243,424 + ABZR87_RS05830 0.58 -2.5
1,243,424 + ABZR87_RS05830 0.58 +0.7
1,243,443 - ABZR87_RS05830 0.59 +1.0
1,243,473 + ABZR87_RS05830 0.62 +0.2
1,243,473 + ABZR87_RS05830 0.62 -1.2
1,243,473 + ABZR87_RS05830 0.62 -0.2
1,243,473 + ABZR87_RS05830 0.62 +1.2
1,243,473 + ABZR87_RS05830 0.62 -2.0
1,243,473 + ABZR87_RS05830 0.62 -0.6
1,243,473 + ABZR87_RS05830 0.62 -1.3
1,243,474 - ABZR87_RS05830 0.62 +0.0
1,243,474 - ABZR87_RS05830 0.62 -2.9
1,243,474 - ABZR87_RS05830 0.62 -0.4
1,243,474 - ABZR87_RS05830 0.62 -1.4
1,243,484 + ABZR87_RS05830 0.63 -0.7
1,243,484 + ABZR87_RS05830 0.63 -0.1
1,243,485 - ABZR87_RS05830 0.63 -0.8
1,243,485 - ABZR87_RS05830 0.63 +1.4
1,243,526 + ABZR87_RS05830 0.67 +1.0
1,243,527 - ABZR87_RS05830 0.67 +1.8

Or see this region's nucleotide sequence