Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05380

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS05370 and ABZR87_RS05375 are separated by 62 nucleotidesABZR87_RS05375 and ABZR87_RS05380 are separated by 629 nucleotidesABZR87_RS05380 and ABZR87_RS05385 are separated by 276 nucleotides ABZR87_RS05370: ABZR87_RS05370 - ribonuclease P protein component, at 1,130,390 to 1,130,812 _RS05370 ABZR87_RS05375: ABZR87_RS05375 - 50S ribosomal protein L34, at 1,130,875 to 1,131,009 _RS05375 ABZR87_RS05380: ABZR87_RS05380 - chromosomal replication initiator protein DnaA, at 1,131,639 to 1,133,228 _RS05380 ABZR87_RS05385: ABZR87_RS05385 - DNA polymerase III subunit beta, at 1,133,505 to 1,134,620 _RS05385 Position (kb) 1131 1132 1133 1134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1130.876 kb on + strandat 1130.876 kb on + strandat 1130.876 kb on + strandat 1130.876 kb on + strandat 1130.876 kb on + strandat 1131.129 kb on - strandat 1131.129 kb on - strandat 1131.129 kb on - strandat 1131.129 kb on - strandat 1131.144 kb on - strandat 1131.144 kb on - strandat 1131.144 kb on - strandat 1131.144 kb on - strandat 1131.433 kb on + strandat 1131.453 kb on + strandat 1131.454 kb on - strandat 1131.454 kb on - strandat 1131.487 kb on + strandat 1131.501 kb on - strandat 1131.517 kb on + strandat 1131.518 kb on - strandat 1131.518 kb on - strandat 1131.518 kb on - strandat 1131.628 kb on + strandat 1131.628 kb on + strandat 1131.628 kb on + strandat 1133.325 kb on + strandat 1133.325 kb on + strandat 1133.325 kb on + strandat 1133.325 kb on + strandat 1133.326 kb on - strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,130,876 + -0.6
1,130,876 + +0.3
1,130,876 + -1.6
1,130,876 + -1.3
1,130,876 + -0.7
1,131,129 - +1.0
1,131,129 - +1.7
1,131,129 - -3.1
1,131,129 - -0.8
1,131,144 - -1.3
1,131,144 - -1.3
1,131,144 - -0.9
1,131,144 - -2.2
1,131,433 + -1.2
1,131,453 + -0.2
1,131,454 - -0.4
1,131,454 - +1.7
1,131,487 + -0.1
1,131,501 - +1.7
1,131,517 + -1.2
1,131,518 - -0.0
1,131,518 - -1.4
1,131,518 - +0.5
1,131,628 + +0.9
1,131,628 + -0.5
1,131,628 + +1.3
1,133,325 + +0.2
1,133,325 + +0.2
1,133,325 + +0.7
1,133,325 + -0.1
1,133,326 - +2.3
1,133,331 + +0.2
1,133,331 + +1.3
1,133,331 + -1.3
1,133,331 + +0.8
1,133,331 + -0.1
1,133,331 + +1.2
1,133,331 + +1.0
1,133,331 + +3.7
1,133,331 + -0.5
1,133,331 + +0.1
1,133,332 - +0.5
1,133,332 - -1.5
1,133,332 - +0.1
1,133,332 - +0.7
1,133,332 - +0.7
1,133,332 - -0.3
1,133,332 - +1.3

Or see this region's nucleotide sequence