Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04755

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS04745 and ABZR87_RS04750 are separated by 14 nucleotidesABZR87_RS04750 and ABZR87_RS04755 are separated by 58 nucleotidesABZR87_RS04755 and ABZR87_RS04760 are separated by 352 nucleotides ABZR87_RS04745: ABZR87_RS04745 - VOC family protein, at 987,684 to 988,340 _RS04745 ABZR87_RS04750: ABZR87_RS04750 - LysR substrate-binding domain-containing protein, at 988,355 to 989,239 _RS04750 ABZR87_RS04755: ABZR87_RS04755 - coniferyl aldehyde dehydrogenase, at 989,298 to 990,722 _RS04755 ABZR87_RS04760: ABZR87_RS04760 - GMC family oxidoreductase N-terminal domain-containing protein, at 991,075 to 992,805 _RS04760 Position (kb) 989 990 991Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 988.298 kb on + strandat 988.338 kb on + strandat 988.938 kb on + strand, within ABZR87_RS04750at 988.938 kb on + strand, within ABZR87_RS04750at 988.938 kb on + strand, within ABZR87_RS04750at 988.938 kb on + strand, within ABZR87_RS04750at 988.938 kb on + strand, within ABZR87_RS04750at 988.939 kb on - strand, within ABZR87_RS04750at 988.939 kb on - strand, within ABZR87_RS04750at 988.939 kb on - strand, within ABZR87_RS04750at 989.250 kb on + strandat 989.250 kb on + strandat 989.251 kb on - strandat 989.251 kb on - strandat 989.257 kb on + strandat 989.258 kb on - strandat 989.258 kb on - strandat 989.258 kb on - strandat 989.289 kb on - strandat 989.434 kb on + strandat 989.435 kb on - strandat 989.542 kb on - strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on + strand, within ABZR87_RS04755at 989.578 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.579 kb on - strand, within ABZR87_RS04755at 989.611 kb on + strand, within ABZR87_RS04755at 989.611 kb on + strand, within ABZR87_RS04755at 989.612 kb on - strand, within ABZR87_RS04755at 989.612 kb on - strand, within ABZR87_RS04755at 989.638 kb on + strand, within ABZR87_RS04755at 989.849 kb on - strand, within ABZR87_RS04755at 989.875 kb on + strand, within ABZR87_RS04755at 989.875 kb on + strand, within ABZR87_RS04755at 989.876 kb on - strand, within ABZR87_RS04755at 989.876 kb on - strand, within ABZR87_RS04755at 989.937 kb on + strand, within ABZR87_RS04755at 989.937 kb on + strand, within ABZR87_RS04755at 989.938 kb on - strand, within ABZR87_RS04755at 989.938 kb on - strand, within ABZR87_RS04755at 989.944 kb on + strand, within ABZR87_RS04755at 989.944 kb on + strand, within ABZR87_RS04755at 989.944 kb on + strand, within ABZR87_RS04755at 989.944 kb on + strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 989.945 kb on - strand, within ABZR87_RS04755at 990.201 kb on + strand, within ABZR87_RS04755at 990.201 kb on + strand, within ABZR87_RS04755at 990.202 kb on - strand, within ABZR87_RS04755at 990.202 kb on - strand, within ABZR87_RS04755at 990.202 kb on - strand, within ABZR87_RS04755at 990.265 kb on + strand, within ABZR87_RS04755at 990.265 kb on + strand, within ABZR87_RS04755at 990.265 kb on + strand, within ABZR87_RS04755at 990.265 kb on + strand, within ABZR87_RS04755at 990.266 kb on - strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.334 kb on + strand, within ABZR87_RS04755at 990.335 kb on - strand, within ABZR87_RS04755at 990.335 kb on - strand, within ABZR87_RS04755at 990.335 kb on - strand, within ABZR87_RS04755at 990.335 kb on - strand, within ABZR87_RS04755at 990.343 kb on + strand, within ABZR87_RS04755at 990.343 kb on + strand, within ABZR87_RS04755at 990.343 kb on + strand, within ABZR87_RS04755at 990.769 kb on + strandat 990.769 kb on + strandat 990.769 kb on + strandat 990.769 kb on + strandat 990.770 kb on - strandat 990.770 kb on - strandat 990.770 kb on - strandat 990.801 kb on + strandat 990.801 kb on + strandat 990.802 kb on - strandat 990.802 kb on - strandat 990.802 kb on - strandat 990.959 kb on + strandat 990.959 kb on + strandat 990.959 kb on + strandat 990.959 kb on + strandat 990.959 kb on + strandat 990.960 kb on - strandat 990.969 kb on - strandat 991.001 kb on + strandat 991.001 kb on + strandat 991.001 kb on + strandat 991.001 kb on + strandat 991.002 kb on - strandat 991.002 kb on - strandat 991.002 kb on - strandat 991.051 kb on + strandat 991.114 kb on + strandat 991.115 kb on - strandat 991.115 kb on - strandat 991.115 kb on - strandat 991.115 kb on - strandat 991.282 kb on + strand, within ABZR87_RS04760at 991.282 kb on + strand, within ABZR87_RS04760at 991.282 kb on + strand, within ABZR87_RS04760at 991.282 kb on + strand, within ABZR87_RS04760at 991.282 kb on + strand, within ABZR87_RS04760at 991.282 kb on + strand, within ABZR87_RS04760at 991.283 kb on - strand, within ABZR87_RS04760at 991.283 kb on - strand, within ABZR87_RS04760at 991.283 kb on - strand, within ABZR87_RS04760at 991.283 kb on - strand, within ABZR87_RS04760at 991.283 kb on - strand, within ABZR87_RS04760at 991.283 kb on - strand, within ABZR87_RS04760at 991.330 kb on + strand, within ABZR87_RS04760at 991.330 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.384 kb on + strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.385 kb on - strand, within ABZR87_RS04760at 991.408 kb on + strand, within ABZR87_RS04760at 991.408 kb on + strand, within ABZR87_RS04760at 991.408 kb on + strand, within ABZR87_RS04760at 991.408 kb on + strand, within ABZR87_RS04760at 991.408 kb on + strand, within ABZR87_RS04760at 991.408 kb on + strand, within ABZR87_RS04760at 991.409 kb on - strand, within ABZR87_RS04760at 991.409 kb on - strand, within ABZR87_RS04760at 991.409 kb on - strand, within ABZR87_RS04760at 991.409 kb on - strand, within ABZR87_RS04760at 991.465 kb on + strand, within ABZR87_RS04760at 991.465 kb on + strand, within ABZR87_RS04760at 991.466 kb on - strand, within ABZR87_RS04760at 991.466 kb on - strand, within ABZR87_RS04760at 991.466 kb on - strand, within ABZR87_RS04760at 991.663 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.678 kb on + strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.679 kb on - strand, within ABZR87_RS04760at 991.711 kb on + strand, within ABZR87_RS04760at 991.712 kb on - strand, within ABZR87_RS04760at 991.712 kb on - strand, within ABZR87_RS04760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
988,298 + +0.1
988,338 + +0.6
988,938 + ABZR87_RS04750 0.66 -0.7
988,938 + ABZR87_RS04750 0.66 +0.3
988,938 + ABZR87_RS04750 0.66 +0.5
988,938 + ABZR87_RS04750 0.66 +0.5
988,938 + ABZR87_RS04750 0.66 +3.7
988,939 - ABZR87_RS04750 0.66 -2.4
988,939 - ABZR87_RS04750 0.66 -0.2
988,939 - ABZR87_RS04750 0.66 +0.5
989,250 + -0.7
989,250 + +2.1
989,251 - +2.9
989,251 - -0.6
989,257 + +0.4
989,258 - +0.4
989,258 - -1.6
989,258 - +0.5
989,289 - +0.9
989,434 + -1.1
989,435 - +1.3
989,542 - ABZR87_RS04755 0.17 -1.3
989,578 + ABZR87_RS04755 0.20 -1.7
989,578 + ABZR87_RS04755 0.20 -1.4
989,578 + ABZR87_RS04755 0.20 -0.8
989,578 + ABZR87_RS04755 0.20 -1.0
989,578 + ABZR87_RS04755 0.20 +0.3
989,578 + ABZR87_RS04755 0.20 +0.2
989,578 + ABZR87_RS04755 0.20 +0.5
989,578 + ABZR87_RS04755 0.20 -1.4
989,578 + ABZR87_RS04755 0.20 -1.0
989,578 + ABZR87_RS04755 0.20 -0.9
989,578 + ABZR87_RS04755 0.20 +2.4
989,578 - ABZR87_RS04755 0.20 +0.7
989,579 - ABZR87_RS04755 0.20 -0.5
989,579 - ABZR87_RS04755 0.20 -0.0
989,579 - ABZR87_RS04755 0.20 +2.3
989,579 - ABZR87_RS04755 0.20 -0.2
989,579 - ABZR87_RS04755 0.20 +0.0
989,579 - ABZR87_RS04755 0.20 -1.7
989,579 - ABZR87_RS04755 0.20 -0.0
989,579 - ABZR87_RS04755 0.20 -0.3
989,579 - ABZR87_RS04755 0.20 +0.5
989,579 - ABZR87_RS04755 0.20 +1.1
989,611 + ABZR87_RS04755 0.22 -0.3
989,611 + ABZR87_RS04755 0.22 +1.3
989,612 - ABZR87_RS04755 0.22 +0.2
989,612 - ABZR87_RS04755 0.22 -0.1
989,638 + ABZR87_RS04755 0.24 -1.4
989,849 - ABZR87_RS04755 0.39 +0.5
989,875 + ABZR87_RS04755 0.40 +3.8
989,875 + ABZR87_RS04755 0.40 -0.6
989,876 - ABZR87_RS04755 0.41 -1.5
989,876 - ABZR87_RS04755 0.41 -0.3
989,937 + ABZR87_RS04755 0.45 -1.3
989,937 + ABZR87_RS04755 0.45 +1.8
989,938 - ABZR87_RS04755 0.45 +0.5
989,938 - ABZR87_RS04755 0.45 -0.5
989,944 + ABZR87_RS04755 0.45 +3.0
989,944 + ABZR87_RS04755 0.45 +3.0
989,944 + ABZR87_RS04755 0.45 +0.6
989,944 + ABZR87_RS04755 0.45 +0.5
989,945 - ABZR87_RS04755 0.45 -1.6
989,945 - ABZR87_RS04755 0.45 -0.9
989,945 - ABZR87_RS04755 0.45 +0.9
989,945 - ABZR87_RS04755 0.45 +0.7
989,945 - ABZR87_RS04755 0.45 -0.4
989,945 - ABZR87_RS04755 0.45 +2.7
989,945 - ABZR87_RS04755 0.45 +0.6
989,945 - ABZR87_RS04755 0.45 +0.1
989,945 - ABZR87_RS04755 0.45 +0.8
989,945 - ABZR87_RS04755 0.45 +3.4
990,201 + ABZR87_RS04755 0.63 -2.3
990,201 + ABZR87_RS04755 0.63 -0.1
990,202 - ABZR87_RS04755 0.63 +0.4
990,202 - ABZR87_RS04755 0.63 -0.7
990,202 - ABZR87_RS04755 0.63 +0.1
990,265 + ABZR87_RS04755 0.68 +0.1
990,265 + ABZR87_RS04755 0.68 -0.6
990,265 + ABZR87_RS04755 0.68 +0.3
990,265 + ABZR87_RS04755 0.68 +0.5
990,266 - ABZR87_RS04755 0.68 +1.5
990,334 + ABZR87_RS04755 0.73 -2.0
990,334 + ABZR87_RS04755 0.73 +1.5
990,334 + ABZR87_RS04755 0.73 +2.2
990,334 + ABZR87_RS04755 0.73 +1.4
990,334 + ABZR87_RS04755 0.73 -0.4
990,334 + ABZR87_RS04755 0.73 -0.2
990,334 + ABZR87_RS04755 0.73 +1.0
990,334 + ABZR87_RS04755 0.73 +1.8
990,335 - ABZR87_RS04755 0.73 -0.4
990,335 - ABZR87_RS04755 0.73 +0.2
990,335 - ABZR87_RS04755 0.73 -0.2
990,335 - ABZR87_RS04755 0.73 +0.4
990,343 + ABZR87_RS04755 0.73 -1.1
990,343 + ABZR87_RS04755 0.73 -0.7
990,343 + ABZR87_RS04755 0.73 +0.7
990,769 + +1.7
990,769 + -1.0
990,769 + +0.6
990,769 + +0.6
990,770 - +0.5
990,770 - +1.1
990,770 - -2.4
990,801 + -0.4
990,801 + +0.6
990,802 - -1.2
990,802 - -2.0
990,802 - +0.4
990,959 + +0.3
990,959 + +0.4
990,959 + +0.1
990,959 + +2.5
990,959 + +1.2
990,960 - +0.4
990,969 - +0.5
991,001 + -0.9
991,001 + -1.3
991,001 + -0.7
991,001 + +0.2
991,002 - +0.2
991,002 - -1.1
991,002 - -0.7
991,051 + -0.7
991,114 + -0.4
991,115 - +0.2
991,115 - +1.7
991,115 - -0.5
991,115 - +0.0
991,282 + ABZR87_RS04760 0.12 +0.3
991,282 + ABZR87_RS04760 0.12 -0.8
991,282 + ABZR87_RS04760 0.12 -1.0
991,282 + ABZR87_RS04760 0.12 +1.9
991,282 + ABZR87_RS04760 0.12 -0.2
991,282 + ABZR87_RS04760 0.12 -0.6
991,283 - ABZR87_RS04760 0.12 -0.8
991,283 - ABZR87_RS04760 0.12 -0.4
991,283 - ABZR87_RS04760 0.12 +0.4
991,283 - ABZR87_RS04760 0.12 -0.5
991,283 - ABZR87_RS04760 0.12 -0.4
991,283 - ABZR87_RS04760 0.12 +0.1
991,330 + ABZR87_RS04760 0.15 +1.8
991,330 + ABZR87_RS04760 0.15 +2.7
991,384 + ABZR87_RS04760 0.18 -0.5
991,384 + ABZR87_RS04760 0.18 -2.2
991,384 + ABZR87_RS04760 0.18 +0.1
991,384 + ABZR87_RS04760 0.18 -0.8
991,384 + ABZR87_RS04760 0.18 +0.9
991,384 + ABZR87_RS04760 0.18 -0.1
991,384 + ABZR87_RS04760 0.18 -1.6
991,385 - ABZR87_RS04760 0.18 -0.9
991,385 - ABZR87_RS04760 0.18 +0.5
991,385 - ABZR87_RS04760 0.18 -1.0
991,385 - ABZR87_RS04760 0.18 +1.1
991,385 - ABZR87_RS04760 0.18 -0.9
991,385 - ABZR87_RS04760 0.18 +0.5
991,385 - ABZR87_RS04760 0.18 -0.3
991,385 - ABZR87_RS04760 0.18 -1.6
991,385 - ABZR87_RS04760 0.18 -0.5
991,408 + ABZR87_RS04760 0.19 +0.2
991,408 + ABZR87_RS04760 0.19 +1.4
991,408 + ABZR87_RS04760 0.19 -2.3
991,408 + ABZR87_RS04760 0.19 -1.5
991,408 + ABZR87_RS04760 0.19 +2.1
991,408 + ABZR87_RS04760 0.19 -0.3
991,409 - ABZR87_RS04760 0.19 -1.3
991,409 - ABZR87_RS04760 0.19 +0.1
991,409 - ABZR87_RS04760 0.19 +1.6
991,409 - ABZR87_RS04760 0.19 -0.6
991,465 + ABZR87_RS04760 0.23 -1.3
991,465 + ABZR87_RS04760 0.23 +1.5
991,466 - ABZR87_RS04760 0.23 -0.6
991,466 - ABZR87_RS04760 0.23 -0.3
991,466 - ABZR87_RS04760 0.23 +0.5
991,663 + ABZR87_RS04760 0.34 -1.1
991,678 + ABZR87_RS04760 0.35 -0.2
991,678 + ABZR87_RS04760 0.35 +1.3
991,678 + ABZR87_RS04760 0.35 -1.2
991,678 + ABZR87_RS04760 0.35 +1.0
991,678 + ABZR87_RS04760 0.35 -1.2
991,678 + ABZR87_RS04760 0.35 +0.1
991,678 + ABZR87_RS04760 0.35 +0.4
991,678 + ABZR87_RS04760 0.35 -0.5
991,679 - ABZR87_RS04760 0.35 -1.5
991,679 - ABZR87_RS04760 0.35 +0.8
991,679 - ABZR87_RS04760 0.35 +3.4
991,679 - ABZR87_RS04760 0.35 -0.7
991,679 - ABZR87_RS04760 0.35 +2.4
991,679 - ABZR87_RS04760 0.35 -0.2
991,679 - ABZR87_RS04760 0.35 -0.3
991,679 - ABZR87_RS04760 0.35 +1.2
991,679 - ABZR87_RS04760 0.35 +0.5
991,711 + ABZR87_RS04760 0.37 +1.8
991,712 - ABZR87_RS04760 0.37 -1.4
991,712 - ABZR87_RS04760 0.37 +0.7

Or see this region's nucleotide sequence