Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04345

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04335 and ABZR87_RS04340 are separated by 44 nucleotidesABZR87_RS04340 and ABZR87_RS04345 are separated by 14 nucleotidesABZR87_RS04345 and ABZR87_RS04350 are separated by 15 nucleotides ABZR87_RS04335: ABZR87_RS04335 - septum site-determining protein MinC, at 905,142 to 905,927 _RS04335 ABZR87_RS04340: ABZR87_RS04340 - septum site-determining protein MinD, at 905,972 to 906,790 _RS04340 ABZR87_RS04345: ABZR87_RS04345 - cell division topological specificity factor MinE, at 906,805 to 907,059 _RS04345 ABZR87_RS04350: ABZR87_RS04350 - citrate synthase family protein, at 907,075 to 908,307 _RS04350 Position (kb) 906 907 908Strain fitness (log2 ratio) -2 -1 0 1 2 3at 905.823 kb on + strand, within ABZR87_RS04335at 905.824 kb on - strand, within ABZR87_RS04335at 905.824 kb on - strand, within ABZR87_RS04335at 905.824 kb on - strand, within ABZR87_RS04335at 905.857 kb on - strandat 905.857 kb on - strandat 905.951 kb on + strandat 905.952 kb on - strandat 905.956 kb on + strandat 905.956 kb on + strandat 905.957 kb on - strandat 905.964 kb on + strandat 905.965 kb on - strandat 905.988 kb on + strandat 905.989 kb on - strandat 905.989 kb on - strandat 905.989 kb on - strandat 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.318 kb on - strand, within ABZR87_RS04340at 906.318 kb on - strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.372 kb on - strand, within ABZR87_RS04340at 906.372 kb on - strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.686 kb on + strand, within ABZR87_RS04340at 906.686 kb on + strand, within ABZR87_RS04340at 906.687 kb on - strand, within ABZR87_RS04340at 906.734 kb on + strandat 906.735 kb on - strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.788 kb on + strandat 907.136 kb on + strandat 907.136 kb on + strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.137 kb on - strandat 907.409 kb on + strand, within ABZR87_RS04350at 907.410 kb on - strand, within ABZR87_RS04350at 907.410 kb on - strand, within ABZR87_RS04350at 907.766 kb on - strand, within ABZR87_RS04350at 907.766 kb on - strand, within ABZR87_RS04350at 907.866 kb on + strand, within ABZR87_RS04350at 907.867 kb on - strand, within ABZR87_RS04350at 907.867 kb on - strand, within ABZR87_RS04350at 907.914 kb on - strand, within ABZR87_RS04350at 908.039 kb on + strand, within ABZR87_RS04350at 908.040 kb on - strand, within ABZR87_RS04350

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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905,823 + ABZR87_RS04335 0.87 +0.3
905,824 - ABZR87_RS04335 0.87 +3.2
905,824 - ABZR87_RS04335 0.87 +0.4
905,824 - ABZR87_RS04335 0.87 -0.4
905,857 - +0.0
905,857 - +0.1
905,951 + -0.5
905,952 - +0.6
905,956 + -0.5
905,956 + -1.5
905,957 - -0.2
905,964 + -0.9
905,965 - -1.6
905,988 + -1.0
905,989 - +0.4
905,989 - +1.6
905,989 - +0.3
906,143 + ABZR87_RS04340 0.21 +0.1
906,143 + ABZR87_RS04340 0.21 +0.4
906,143 + ABZR87_RS04340 0.21 -2.4
906,143 + ABZR87_RS04340 0.21 +1.6
906,143 + ABZR87_RS04340 0.21 +0.0
906,143 + ABZR87_RS04340 0.21 +0.1
906,144 - ABZR87_RS04340 0.21 +0.7
906,144 - ABZR87_RS04340 0.21 -0.5
906,144 - ABZR87_RS04340 0.21 +0.6
906,317 + ABZR87_RS04340 0.42 -0.1
906,317 + ABZR87_RS04340 0.42 -0.8
906,317 + ABZR87_RS04340 0.42 -0.1
906,317 + ABZR87_RS04340 0.42 -1.4
906,318 - ABZR87_RS04340 0.42 +0.5
906,318 - ABZR87_RS04340 0.42 +1.0
906,371 + ABZR87_RS04340 0.49 -0.5
906,371 + ABZR87_RS04340 0.49 -1.9
906,371 + ABZR87_RS04340 0.49 -2.0
906,371 + ABZR87_RS04340 0.49 -0.4
906,371 + ABZR87_RS04340 0.49 -1.1
906,371 + ABZR87_RS04340 0.49 -2.6
906,372 - ABZR87_RS04340 0.49 +0.6
906,372 - ABZR87_RS04340 0.49 -0.4
906,518 + ABZR87_RS04340 0.67 -1.6
906,518 + ABZR87_RS04340 0.67 -0.0
906,518 + ABZR87_RS04340 0.67 -0.3
906,518 + ABZR87_RS04340 0.67 +1.6
906,518 + ABZR87_RS04340 0.67 -0.2
906,518 + ABZR87_RS04340 0.67 -0.3
906,518 + ABZR87_RS04340 0.67 +0.6
906,519 - ABZR87_RS04340 0.67 +1.8
906,519 - ABZR87_RS04340 0.67 -0.7
906,519 - ABZR87_RS04340 0.67 +0.5
906,686 + ABZR87_RS04340 0.87 +3.4
906,686 + ABZR87_RS04340 0.87 -1.0
906,687 - ABZR87_RS04340 0.87 -0.6
906,734 + +0.4
906,735 - -0.2
906,743 + +1.8
906,743 + -0.2
906,743 + +0.2
906,743 + -0.6
906,744 - +0.4
906,744 - +2.2
906,744 - +0.4
906,744 - +2.0
906,788 + -0.6
907,136 + +0.1
907,136 + -0.2
907,137 - +0.6
907,137 - +3.4
907,137 - -0.3
907,137 - -1.5
907,137 - -1.4
907,409 + ABZR87_RS04350 0.27 -0.4
907,410 - ABZR87_RS04350 0.27 +0.7
907,410 - ABZR87_RS04350 0.27 +0.1
907,766 - ABZR87_RS04350 0.56 -0.4
907,766 - ABZR87_RS04350 0.56 -0.3
907,866 + ABZR87_RS04350 0.64 -0.0
907,867 - ABZR87_RS04350 0.64 +2.4
907,867 - ABZR87_RS04350 0.64 +3.1
907,914 - ABZR87_RS04350 0.68 +3.4
908,039 + ABZR87_RS04350 0.78 -0.3
908,040 - ABZR87_RS04350 0.78 +0.4

Or see this region's nucleotide sequence