Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04275 and ABZR87_RS04280 are separated by 76 nucleotides ABZR87_RS04280 and ABZR87_RS04285 are separated by 8 nucleotides ABZR87_RS04285 and ABZR87_RS04290 are separated by 16 nucleotides
ABZR87_RS04275: ABZR87_RS04275 - DUF3717 domain-containing protein, at 892,070 to 892,297
_RS04275
ABZR87_RS04280: ABZR87_RS04280 - response regulator transcription factor, at 892,374 to 893,084
_RS04280
ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766
_RS04285
ABZR87_RS04290: ABZR87_RS04290 - SET domain-containing protein-lysine N-methyltransferase, at 894,783 to 895,322
_RS04290
Position (kb) 893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.665 kb on + strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 893.055 kb on + strand at 893.082 kb on + strand at 893.082 kb on + strand at 893.082 kb on + strand at 893.083 kb on - strand at 893.240 kb on + strand at 893.240 kb on + strand at 893.241 kb on - strand at 893.241 kb on - strand at 893.241 kb on - strand at 893.258 kb on + strand at 893.258 kb on + strand at 893.259 kb on - strand at 893.357 kb on + strand, within ABZR87_RS04285 at 893.357 kb on + strand, within ABZR87_RS04285 at 893.357 kb on + strand, within ABZR87_RS04285 at 893.358 kb on - strand, within ABZR87_RS04285 at 893.414 kb on + strand, within ABZR87_RS04285 at 893.414 kb on + strand, within ABZR87_RS04285 at 893.415 kb on - strand, within ABZR87_RS04285 at 893.415 kb on - strand, within ABZR87_RS04285 at 893.415 kb on - strand, within ABZR87_RS04285 at 893.471 kb on + strand, within ABZR87_RS04285 at 893.472 kb on - strand, within ABZR87_RS04285 at 893.513 kb on + strand, within ABZR87_RS04285 at 893.513 kb on + strand, within ABZR87_RS04285 at 893.514 kb on - strand, within ABZR87_RS04285 at 893.514 kb on - strand, within ABZR87_RS04285 at 894.118 kb on - strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.644 kb on - strand at 894.764 kb on + strand at 894.784 kb on + strand at 894.904 kb on + strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 895.033 kb on + strand, within ABZR87_RS04290 at 895.034 kb on - strand, within ABZR87_RS04290 at 895.072 kb on + strand, within ABZR87_RS04290 at 895.072 kb on + strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.151 kb on - strand, within ABZR87_RS04290 at 895.151 kb on - strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.337 kb on + strand at 895.337 kb on + strand at 895.338 kb on - strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.379 kb on - strand at 895.379 kb on - strand at 895.379 kb on - strand at 895.461 kb on + strand at 895.462 kb on - strand at 895.462 kb on - strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.562 kb on + strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.620 kb on + strand at 895.621 kb on - strand at 895.634 kb on + strand at 895.638 kb on + strand at 895.652 kb on - strand at 895.661 kb on + strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.668 kb on + strand at 895.668 kb on + strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.672 kb on - strand at 895.672 kb on - strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.680 kb on + strand at 895.681 kb on + strand at 895.681 kb on - strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.698 kb on + strand at 895.698 kb on + strand at 895.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 892,101 + ABZR87_RS04275 0.14 -0.3 892,101 + ABZR87_RS04275 0.14 +1.0 892,101 + ABZR87_RS04275 0.14 +1.3 892,101 + ABZR87_RS04275 0.14 +0.1 892,101 + ABZR87_RS04275 0.14 +0.2 892,102 - ABZR87_RS04275 0.14 -1.2 892,102 - ABZR87_RS04275 0.14 +1.1 892,157 + ABZR87_RS04275 0.38 +0.9 892,157 + ABZR87_RS04275 0.38 +1.4 892,157 + ABZR87_RS04275 0.38 +0.7 892,157 + ABZR87_RS04275 0.38 +1.4 892,157 + ABZR87_RS04275 0.38 +0.9 892,157 + ABZR87_RS04275 0.38 -0.6 892,157 + ABZR87_RS04275 0.38 +1.4 892,157 + ABZR87_RS04275 0.38 -1.2 892,157 + ABZR87_RS04275 0.38 +0.2 892,157 + ABZR87_RS04275 0.38 -0.3 892,158 - ABZR87_RS04275 0.39 +1.1 892,158 - ABZR87_RS04275 0.39 +2.1 892,158 - ABZR87_RS04275 0.39 +0.9 892,158 - ABZR87_RS04275 0.39 -0.6 892,158 - ABZR87_RS04275 0.39 +0.9 892,158 - ABZR87_RS04275 0.39 -1.6 892,173 + ABZR87_RS04275 0.45 +0.4 892,173 + ABZR87_RS04275 0.45 -0.9 892,174 - ABZR87_RS04275 0.46 +0.7 892,174 - ABZR87_RS04275 0.46 +1.7 892,174 - ABZR87_RS04275 0.46 +0.4 892,308 + -0.3 892,308 + +0.3 892,308 + -0.4 892,308 + +0.2 892,308 + -1.4 892,309 - -2.4 892,309 - +0.3 892,309 - +0.3 892,309 - -0.3 892,309 - -0.9 892,309 - +1.2 892,309 - -0.4 892,665 + ABZR87_RS04280 0.41 -1.9 892,666 - ABZR87_RS04280 0.41 +0.4 892,666 - ABZR87_RS04280 0.41 -0.1 892,666 - ABZR87_RS04280 0.41 -1.5 892,666 - ABZR87_RS04280 0.41 -1.6 892,666 - ABZR87_RS04280 0.41 +0.4 892,666 - ABZR87_RS04280 0.41 -0.9 892,986 + ABZR87_RS04280 0.86 -1.4 892,986 + ABZR87_RS04280 0.86 +0.6 892,986 + ABZR87_RS04280 0.86 +0.9 892,986 + ABZR87_RS04280 0.86 +1.1 892,986 + ABZR87_RS04280 0.86 +0.8 892,986 + ABZR87_RS04280 0.86 +0.1 892,986 + ABZR87_RS04280 0.86 +1.4 892,986 + ABZR87_RS04280 0.86 -1.6 892,986 + ABZR87_RS04280 0.86 -1.5 892,986 + ABZR87_RS04280 0.86 -1.3 892,987 - ABZR87_RS04280 0.86 +1.4 892,987 - ABZR87_RS04280 0.86 +0.3 892,987 - ABZR87_RS04280 0.86 -0.5 892,987 - ABZR87_RS04280 0.86 -2.3 892,987 - ABZR87_RS04280 0.86 -0.1 892,987 - ABZR87_RS04280 0.86 -0.9 892,987 - ABZR87_RS04280 0.86 -0.7 892,987 - ABZR87_RS04280 0.86 +1.3 892,987 - ABZR87_RS04280 0.86 -0.3 892,987 - ABZR87_RS04280 0.86 -1.6 892,987 - ABZR87_RS04280 0.86 +0.5 892,987 - ABZR87_RS04280 0.86 +0.5 892,987 - ABZR87_RS04280 0.86 -0.5 892,987 - ABZR87_RS04280 0.86 -0.5 892,987 - ABZR87_RS04280 0.86 +0.1 893,055 + -0.3 893,082 + -2.8 893,082 + -0.5 893,082 + +0.9 893,083 - +0.1 893,240 + -0.9 893,240 + +0.6 893,241 - +0.5 893,241 - -1.4 893,241 - -1.2 893,258 + -0.5 893,258 + -0.0 893,259 - +0.2 893,357 + ABZR87_RS04285 0.16 +3.9 893,357 + ABZR87_RS04285 0.16 -2.8 893,357 + ABZR87_RS04285 0.16 -0.5 893,358 - ABZR87_RS04285 0.16 -0.2 893,414 + ABZR87_RS04285 0.19 -0.0 893,414 + ABZR87_RS04285 0.19 +0.9 893,415 - ABZR87_RS04285 0.19 +0.1 893,415 - ABZR87_RS04285 0.19 -0.7 893,415 - ABZR87_RS04285 0.19 +0.4 893,471 + ABZR87_RS04285 0.23 -0.4 893,472 - ABZR87_RS04285 0.23 +0.6 893,513 + ABZR87_RS04285 0.25 -0.8 893,513 + ABZR87_RS04285 0.25 +0.8 893,514 - ABZR87_RS04285 0.25 -0.7 893,514 - ABZR87_RS04285 0.25 +0.7 894,118 - ABZR87_RS04285 0.61 +1.5 894,443 + ABZR87_RS04285 0.81 +0.4 894,443 + ABZR87_RS04285 0.81 -0.0 894,443 + ABZR87_RS04285 0.81 -1.4 894,443 + ABZR87_RS04285 0.81 +0.8 894,443 + ABZR87_RS04285 0.81 -0.1 894,444 - ABZR87_RS04285 0.81 +0.6 894,444 - ABZR87_RS04285 0.81 +1.2 894,444 - ABZR87_RS04285 0.81 +0.9 894,644 - -0.3 894,764 + +0.5 894,784 + +0.2 894,904 + ABZR87_RS04290 0.22 -0.2 894,905 - ABZR87_RS04290 0.23 -1.5 894,905 - ABZR87_RS04290 0.23 -2.0 894,905 - ABZR87_RS04290 0.23 +2.4 894,905 - ABZR87_RS04290 0.23 -0.7 894,905 - ABZR87_RS04290 0.23 +3.1 894,910 + ABZR87_RS04290 0.24 +0.2 894,910 + ABZR87_RS04290 0.24 -1.2 894,910 + ABZR87_RS04290 0.24 +5.1 894,911 - ABZR87_RS04290 0.24 -0.5 894,911 - ABZR87_RS04290 0.24 +0.4 894,911 - ABZR87_RS04290 0.24 -1.4 894,911 - ABZR87_RS04290 0.24 -0.0 894,911 - ABZR87_RS04290 0.24 -0.7 894,911 - ABZR87_RS04290 0.24 -0.5 894,911 - ABZR87_RS04290 0.24 +0.6 895,033 + ABZR87_RS04290 0.46 -1.3 895,034 - ABZR87_RS04290 0.46 +0.5 895,072 + ABZR87_RS04290 0.54 +0.6 895,072 + ABZR87_RS04290 0.54 -0.1 895,073 - ABZR87_RS04290 0.54 -1.2 895,073 - ABZR87_RS04290 0.54 -1.0 895,073 - ABZR87_RS04290 0.54 -2.0 895,073 - ABZR87_RS04290 0.54 +0.0 895,073 - ABZR87_RS04290 0.54 +0.2 895,150 + ABZR87_RS04290 0.68 +2.8 895,150 + ABZR87_RS04290 0.68 -1.4 895,150 + ABZR87_RS04290 0.68 +0.5 895,150 + ABZR87_RS04290 0.68 -0.2 895,151 - ABZR87_RS04290 0.68 -0.5 895,151 - ABZR87_RS04290 0.68 -0.8 895,192 + ABZR87_RS04290 0.76 -0.3 895,192 + ABZR87_RS04290 0.76 +1.4 895,192 + ABZR87_RS04290 0.76 -0.3 895,192 + ABZR87_RS04290 0.76 -0.4 895,192 + ABZR87_RS04290 0.76 -1.2 895,192 + ABZR87_RS04290 0.76 -1.6 895,193 - ABZR87_RS04290 0.76 -1.0 895,193 - ABZR87_RS04290 0.76 -0.3 895,193 - ABZR87_RS04290 0.76 +1.4 895,193 - ABZR87_RS04290 0.76 -0.2 895,193 - ABZR87_RS04290 0.76 -0.2 895,193 - ABZR87_RS04290 0.76 -0.6 895,193 - ABZR87_RS04290 0.76 +1.5 895,193 - ABZR87_RS04290 0.76 -0.8 895,193 - ABZR87_RS04290 0.76 -0.3 895,337 + +0.4 895,337 + -0.2 895,338 - -2.4 895,378 + -1.0 895,378 + +0.1 895,378 + +0.8 895,378 + -0.5 895,379 - +0.6 895,379 - -0.8 895,379 - -0.6 895,461 + -0.1 895,462 - +1.9 895,462 - -0.4 895,465 + -1.0 895,465 + -1.1 895,465 + +0.5 895,465 + -1.0 895,562 + +1.0 895,563 - +0.4 895,563 - -0.3 895,563 - -0.6 895,563 - -0.2 895,563 - -1.6 895,563 - -0.1 895,620 + +0.5 895,621 - -0.0 895,634 + +0.2 895,638 + +0.6 895,652 - -0.7 895,661 + -2.5 895,662 - +4.7 895,662 - -0.1 895,665 + -0.5 895,665 + +0.9 895,665 + -0.8 895,668 + -0.2 895,668 + -2.4 895,669 - -0.7 895,669 - -0.3 895,669 - +0.5 895,669 - +2.0 895,669 - -0.8 895,671 + +0.1 895,671 + -1.3 895,671 + +1.4 895,671 + -0.3 895,671 + -1.4 895,671 + -1.4 895,672 - -0.9 895,672 - +0.3 895,674 + +2.4 895,674 + +0.4 895,674 + -2.6 895,674 + -0.4 895,674 + -0.2 895,674 + +0.1 895,674 + -0.2 895,674 + -0.5 895,674 + +2.1 895,674 + -0.1 895,674 + +0.2 895,674 + -0.2 895,675 - +1.0 895,675 - -2.5 895,675 - -0.3 895,675 - -0.2 895,675 - -0.9 895,675 - -1.0 895,675 - +0.8 895,675 - -0.6 895,675 - -0.2 895,675 - +2.7 895,675 - -0.1 895,675 - -0.0 895,675 - -0.7 895,680 + -1.3 895,681 + +0.7 895,681 - -1.1 895,682 + +0.7 895,682 + -1.7 895,682 + -0.5 895,683 - +0.5 895,683 - -0.4 895,683 - -1.0 895,683 - +1.8 895,683 - -2.7 895,683 - +0.4 895,683 - +1.3 895,683 - +1.4 895,683 - +0.1 895,683 - -0.1 895,683 - -2.7 895,686 + +0.6 895,686 + +0.1 895,686 + -1.0 895,686 + +0.5 895,686 + -0.1 895,687 - +1.7 895,687 - +1.8 895,687 - -1.4 895,687 - -0.1 895,687 - +0.5 895,698 + +1.8 895,698 + -0.9 895,699 - +0.8
Or see this region's nucleotide sequence