Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04235 and ABZR87_RS04240 are separated by 145 nucleotides ABZR87_RS04240 and ABZR87_RS04245 are separated by 65 nucleotides ABZR87_RS04245 and ABZR87_RS04250 are separated by 203 nucleotides
ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867
_RS04235
ABZR87_RS04240: ABZR87_RS04240 - heavy-metal-associated domain-containing protein, at 887,013 to 887,225
_RS04240
ABZR87_RS04245: ABZR87_RS04245 - OmpW family protein, at 887,291 to 888,019
_RS04245
ABZR87_RS04250: ABZR87_RS04250 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 888,223 to 889,224
_RS04250
Position (kb) 887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 886.299 kb on + strand, within ABZR87_RS04235 at 886.299 kb on + strand, within ABZR87_RS04235 at 886.300 kb on - strand, within ABZR87_RS04235 at 886.300 kb on - strand, within ABZR87_RS04235 at 886.366 kb on - strand, within ABZR87_RS04235 at 886.366 kb on - strand, within ABZR87_RS04235 at 886.366 kb on - strand, within ABZR87_RS04235 at 886.402 kb on + strand, within ABZR87_RS04235 at 886.402 kb on + strand, within ABZR87_RS04235 at 886.403 kb on - strand, within ABZR87_RS04235 at 886.443 kb on + strand, within ABZR87_RS04235 at 886.443 kb on + strand, within ABZR87_RS04235 at 886.444 kb on - strand, within ABZR87_RS04235 at 886.659 kb on + strand at 886.660 kb on - strand at 886.660 kb on - strand at 886.660 kb on - strand at 886.660 kb on - strand at 886.824 kb on + strand at 886.903 kb on - strand at 886.938 kb on + strand at 886.938 kb on + strand at 886.938 kb on + strand at 886.971 kb on - strand at 886.971 kb on - strand at 886.971 kb on - strand at 886.971 kb on - strand at 887.068 kb on + strand, within ABZR87_RS04240 at 887.069 kb on - strand, within ABZR87_RS04240 at 887.292 kb on + strand at 887.293 kb on - strand at 887.293 kb on - strand at 887.293 kb on - strand at 887.293 kb on - strand at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.457 kb on + strand, within ABZR87_RS04245 at 887.457 kb on + strand, within ABZR87_RS04245 at 887.457 kb on + strand, within ABZR87_RS04245 at 887.458 kb on - strand, within ABZR87_RS04245 at 887.458 kb on - strand, within ABZR87_RS04245 at 887.458 kb on - strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.614 kb on - strand, within ABZR87_RS04245 at 887.614 kb on - strand, within ABZR87_RS04245 at 887.614 kb on - strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.700 kb on + strand, within ABZR87_RS04245 at 887.701 kb on - strand, within ABZR87_RS04245 at 887.784 kb on + strand, within ABZR87_RS04245 at 887.791 kb on + strand, within ABZR87_RS04245 at 887.791 kb on + strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 888.010 kb on + strand at 888.010 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.086 kb on - strand at 888.086 kb on - strand at 888.117 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.167 kb on + strand at 888.168 kb on - strand at 888.168 kb on - strand at 888.168 kb on - strand at 888.168 kb on - strand at 888.361 kb on + strand, within ABZR87_RS04250 at 888.361 kb on + strand, within ABZR87_RS04250 at 888.361 kb on + strand, within ABZR87_RS04250 at 888.362 kb on - strand, within ABZR87_RS04250 at 888.362 kb on - strand, within ABZR87_RS04250 at 888.362 kb on - strand, within ABZR87_RS04250 at 888.443 kb on + strand, within ABZR87_RS04250 at 888.443 kb on + strand, within ABZR87_RS04250 at 888.444 kb on - strand, within ABZR87_RS04250 at 888.444 kb on - strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.551 kb on + strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.552 kb on - strand, within ABZR87_RS04250 at 888.615 kb on + strand, within ABZR87_RS04250 at 888.615 kb on + strand, within ABZR87_RS04250 at 888.719 kb on + strand, within ABZR87_RS04250 at 888.719 kb on + strand, within ABZR87_RS04250 at 888.719 kb on + strand, within ABZR87_RS04250 at 888.719 kb on + strand, within ABZR87_RS04250 at 888.719 kb on + strand, within ABZR87_RS04250 at 888.719 kb on + strand, within ABZR87_RS04250 at 888.720 kb on - strand, within ABZR87_RS04250 at 888.722 kb on + strand, within ABZR87_RS04250 at 888.722 kb on + strand, within ABZR87_RS04250 at 888.723 kb on - strand, within ABZR87_RS04250 at 888.723 kb on - strand, within ABZR87_RS04250 at 888.723 kb on - strand, within ABZR87_RS04250 at 888.723 kb on - strand, within ABZR87_RS04250 at 888.723 kb on - strand, within ABZR87_RS04250 at 888.723 kb on - strand, within ABZR87_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 886,299 + ABZR87_RS04235 0.74 -1.7 886,299 + ABZR87_RS04235 0.74 +0.6 886,300 - ABZR87_RS04235 0.74 -1.4 886,300 - ABZR87_RS04235 0.74 +0.2 886,366 - ABZR87_RS04235 0.77 -1.2 886,366 - ABZR87_RS04235 0.77 -0.6 886,366 - ABZR87_RS04235 0.77 -2.2 886,402 + ABZR87_RS04235 0.79 -1.2 886,402 + ABZR87_RS04235 0.79 +2.4 886,403 - ABZR87_RS04235 0.79 -1.0 886,443 + ABZR87_RS04235 0.81 -1.0 886,443 + ABZR87_RS04235 0.81 -0.3 886,444 - ABZR87_RS04235 0.81 -1.9 886,659 + +0.5 886,660 - -0.3 886,660 - -0.1 886,660 - -0.4 886,660 - +0.8 886,824 + -0.4 886,903 - +1.0 886,938 + +0.9 886,938 + -1.6 886,938 + -0.1 886,971 - +0.1 886,971 - -0.0 886,971 - -1.7 886,971 - +2.4 887,068 + ABZR87_RS04240 0.26 +0.4 887,069 - ABZR87_RS04240 0.26 +1.5 887,292 + +2.4 887,293 - +0.3 887,293 - -0.3 887,293 - +1.9 887,293 - -0.8 887,416 - ABZR87_RS04245 0.17 +0.8 887,416 - ABZR87_RS04245 0.17 -0.6 887,416 - ABZR87_RS04245 0.17 +1.3 887,416 - ABZR87_RS04245 0.17 -0.6 887,416 - ABZR87_RS04245 0.17 +0.2 887,416 - ABZR87_RS04245 0.17 -0.2 887,416 - ABZR87_RS04245 0.17 +0.9 887,416 - ABZR87_RS04245 0.17 -0.3 887,457 + ABZR87_RS04245 0.23 -0.0 887,457 + ABZR87_RS04245 0.23 -0.7 887,457 + ABZR87_RS04245 0.23 +0.6 887,458 - ABZR87_RS04245 0.23 +1.8 887,458 - ABZR87_RS04245 0.23 -0.0 887,458 - ABZR87_RS04245 0.23 +0.7 887,592 + ABZR87_RS04245 0.41 -0.8 887,592 + ABZR87_RS04245 0.41 +1.2 887,592 + ABZR87_RS04245 0.41 +0.3 887,592 + ABZR87_RS04245 0.41 -1.0 887,592 + ABZR87_RS04245 0.41 +2.8 887,592 + ABZR87_RS04245 0.41 -0.7 887,592 + ABZR87_RS04245 0.41 +0.2 887,593 - ABZR87_RS04245 0.41 -0.8 887,593 - ABZR87_RS04245 0.41 -1.4 887,593 - ABZR87_RS04245 0.41 -1.0 887,593 - ABZR87_RS04245 0.41 +0.2 887,593 - ABZR87_RS04245 0.41 +3.9 887,593 - ABZR87_RS04245 0.41 -2.6 887,593 - ABZR87_RS04245 0.41 +1.5 887,593 - ABZR87_RS04245 0.41 +2.3 887,593 - ABZR87_RS04245 0.41 -0.4 887,593 - ABZR87_RS04245 0.41 -0.2 887,593 - ABZR87_RS04245 0.41 +1.8 887,593 - ABZR87_RS04245 0.41 +2.0 887,613 + ABZR87_RS04245 0.44 +0.7 887,613 + ABZR87_RS04245 0.44 -0.4 887,613 + ABZR87_RS04245 0.44 +0.6 887,613 + ABZR87_RS04245 0.44 -0.5 887,613 + ABZR87_RS04245 0.44 -0.6 887,613 + ABZR87_RS04245 0.44 +1.7 887,613 + ABZR87_RS04245 0.44 -0.5 887,613 + ABZR87_RS04245 0.44 +0.1 887,614 - ABZR87_RS04245 0.44 +0.3 887,614 - ABZR87_RS04245 0.44 +3.4 887,614 - ABZR87_RS04245 0.44 -1.0 887,646 + ABZR87_RS04245 0.49 -0.6 887,646 + ABZR87_RS04245 0.49 -1.5 887,646 + ABZR87_RS04245 0.49 -1.6 887,646 + ABZR87_RS04245 0.49 +0.8 887,647 - ABZR87_RS04245 0.49 -0.1 887,647 - ABZR87_RS04245 0.49 -0.1 887,647 - ABZR87_RS04245 0.49 -0.2 887,647 - ABZR87_RS04245 0.49 +2.4 887,647 - ABZR87_RS04245 0.49 -0.5 887,647 - ABZR87_RS04245 0.49 +0.2 887,700 + ABZR87_RS04245 0.56 -0.1 887,701 - ABZR87_RS04245 0.56 +1.0 887,784 + ABZR87_RS04245 0.68 +2.0 887,791 + ABZR87_RS04245 0.69 -1.0 887,791 + ABZR87_RS04245 0.69 -0.6 887,792 - ABZR87_RS04245 0.69 -0.4 887,792 - ABZR87_RS04245 0.69 +0.3 887,792 - ABZR87_RS04245 0.69 -1.2 887,792 - ABZR87_RS04245 0.69 +1.0 887,902 + ABZR87_RS04245 0.84 -0.1 887,902 + ABZR87_RS04245 0.84 -0.8 887,902 + ABZR87_RS04245 0.84 -0.1 887,902 + ABZR87_RS04245 0.84 -0.9 887,903 - ABZR87_RS04245 0.84 -0.2 887,903 - ABZR87_RS04245 0.84 -0.5 887,903 - ABZR87_RS04245 0.84 +0.3 887,903 - ABZR87_RS04245 0.84 -0.7 887,903 - ABZR87_RS04245 0.84 +2.0 887,903 - ABZR87_RS04245 0.84 -0.8 887,903 - ABZR87_RS04245 0.84 +1.8 888,010 + +1.8 888,010 + +0.6 888,025 + -0.2 888,025 + -0.7 888,025 + -2.3 888,025 + -3.0 888,025 + +1.4 888,025 + -0.8 888,025 + +0.9 888,025 + -2.1 888,025 + -0.2 888,025 + -0.1 888,025 + +0.0 888,025 + +1.4 888,025 + -0.4 888,025 + +0.3 888,025 + -0.1 888,026 - -1.7 888,026 - +0.1 888,026 - +3.6 888,026 - -2.0 888,026 - +0.2 888,026 - +2.6 888,026 - +2.7 888,026 - -0.2 888,026 - +2.0 888,026 - -1.9 888,085 + -0.7 888,085 + +3.5 888,085 + +2.5 888,085 + -0.7 888,085 + -0.1 888,086 - -0.2 888,086 - -1.1 888,117 + -1.0 888,139 + -0.2 888,139 + +0.8 888,139 + +1.5 888,139 + +0.9 888,139 + -0.9 888,139 + -0.7 888,139 + -0.2 888,139 + +5.0 888,139 + -0.4 888,139 + -1.3 888,139 + +0.6 888,139 + -0.4 888,139 + -0.8 888,140 - -1.1 888,140 - -1.1 888,140 - +0.1 888,140 - +1.6 888,140 - +0.2 888,167 + +1.4 888,168 - -0.9 888,168 - -2.5 888,168 - -0.6 888,168 - -1.5 888,361 + ABZR87_RS04250 0.14 +0.6 888,361 + ABZR87_RS04250 0.14 -0.5 888,361 + ABZR87_RS04250 0.14 +0.8 888,362 - ABZR87_RS04250 0.14 +2.0 888,362 - ABZR87_RS04250 0.14 +0.8 888,362 - ABZR87_RS04250 0.14 -0.4 888,443 + ABZR87_RS04250 0.22 -0.6 888,443 + ABZR87_RS04250 0.22 +1.2 888,444 - ABZR87_RS04250 0.22 +0.7 888,444 - ABZR87_RS04250 0.22 +0.5 888,551 + ABZR87_RS04250 0.33 -1.2 888,551 + ABZR87_RS04250 0.33 +0.7 888,551 + ABZR87_RS04250 0.33 +2.4 888,551 + ABZR87_RS04250 0.33 -1.7 888,551 + ABZR87_RS04250 0.33 +2.1 888,551 + ABZR87_RS04250 0.33 +1.4 888,551 + ABZR87_RS04250 0.33 -0.6 888,552 - ABZR87_RS04250 0.33 +1.0 888,552 - ABZR87_RS04250 0.33 -0.7 888,552 - ABZR87_RS04250 0.33 -1.4 888,552 - ABZR87_RS04250 0.33 -1.0 888,552 - ABZR87_RS04250 0.33 +0.4 888,552 - ABZR87_RS04250 0.33 +1.2 888,552 - ABZR87_RS04250 0.33 -0.1 888,552 - ABZR87_RS04250 0.33 +0.6 888,615 + ABZR87_RS04250 0.39 +0.9 888,615 + ABZR87_RS04250 0.39 -0.7 888,719 + ABZR87_RS04250 0.50 +1.0 888,719 + ABZR87_RS04250 0.50 -1.0 888,719 + ABZR87_RS04250 0.50 +1.4 888,719 + ABZR87_RS04250 0.50 -0.8 888,719 + ABZR87_RS04250 0.50 +0.4 888,719 + ABZR87_RS04250 0.50 +0.4 888,720 - ABZR87_RS04250 0.50 -0.1 888,722 + ABZR87_RS04250 0.50 -0.1 888,722 + ABZR87_RS04250 0.50 -0.2 888,723 - ABZR87_RS04250 0.50 +0.6 888,723 - ABZR87_RS04250 0.50 +0.8 888,723 - ABZR87_RS04250 0.50 +0.5 888,723 - ABZR87_RS04250 0.50 +0.0 888,723 - ABZR87_RS04250 0.50 -0.4 888,723 - ABZR87_RS04250 0.50 -3.3
Or see this region's nucleotide sequence