Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04195 and ABZR87_RS04200 are separated by 14 nucleotides ABZR87_RS04200 and ABZR87_RS04205 are separated by 80 nucleotides
ABZR87_RS04195: ABZR87_RS04195 - branched-chain amino acid ABC transporter permease, at 876,441 to 877,427
_RS04195
ABZR87_RS04200: ABZR87_RS04200 - branched-chain amino acid ABC transporter permease, at 877,442 to 878,326
_RS04200
ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615
_RS04205
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 876.557 kb on + strand, within ABZR87_RS04195 at 876.558 kb on - strand, within ABZR87_RS04195 at 876.829 kb on + strand, within ABZR87_RS04195 at 876.830 kb on - strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.949 kb on + strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.950 kb on - strand, within ABZR87_RS04195 at 876.952 kb on + strand, within ABZR87_RS04195 at 876.953 kb on - strand, within ABZR87_RS04195 at 876.953 kb on - strand, within ABZR87_RS04195 at 876.953 kb on - strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.060 kb on + strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.061 kb on - strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.099 kb on + strand, within ABZR87_RS04195 at 877.100 kb on - strand, within ABZR87_RS04195 at 877.100 kb on - strand, within ABZR87_RS04195 at 877.100 kb on - strand, within ABZR87_RS04195 at 877.213 kb on + strand, within ABZR87_RS04195 at 877.214 kb on - strand, within ABZR87_RS04195 at 877.225 kb on + strand, within ABZR87_RS04195 at 877.225 kb on + strand, within ABZR87_RS04195 at 877.226 kb on - strand, within ABZR87_RS04195 at 877.226 kb on - strand, within ABZR87_RS04195 at 877.276 kb on + strand, within ABZR87_RS04195 at 877.394 kb on - strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.402 kb on + strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.403 kb on - strand at 877.531 kb on - strand, within ABZR87_RS04200 at 877.726 kb on - strand, within ABZR87_RS04200 at 877.726 kb on - strand, within ABZR87_RS04200 at 877.803 kb on + strand, within ABZR87_RS04200 at 877.804 kb on - strand, within ABZR87_RS04200 at 877.884 kb on + strand, within ABZR87_RS04200 at 877.885 kb on - strand, within ABZR87_RS04200 at 877.944 kb on + strand, within ABZR87_RS04200 at 877.944 kb on + strand, within ABZR87_RS04200 at 877.945 kb on - strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.965 kb on + strand, within ABZR87_RS04200 at 877.966 kb on - strand, within ABZR87_RS04200 at 877.966 kb on - strand, within ABZR87_RS04200 at 877.966 kb on - strand, within ABZR87_RS04200 at 878.025 kb on + strand, within ABZR87_RS04200 at 878.026 kb on - strand, within ABZR87_RS04200 at 878.043 kb on + strand, within ABZR87_RS04200 at 878.043 kb on + strand, within ABZR87_RS04200 at 878.044 kb on - strand, within ABZR87_RS04200 at 878.044 kb on - strand, within ABZR87_RS04200 at 878.044 kb on - strand, within ABZR87_RS04200 at 878.124 kb on + strand, within ABZR87_RS04200 at 878.140 kb on - strand, within ABZR87_RS04200 at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.253 kb on + strand at 878.254 kb on - strand at 878.254 kb on - strand at 878.401 kb on - strand at 878.489 kb on + strand at 878.490 kb on - strand at 878.490 kb on - strand at 878.537 kb on + strand, within ABZR87_RS04205 at 878.537 kb on + strand, within ABZR87_RS04205 at 878.537 kb on + strand, within ABZR87_RS04205 at 878.537 kb on + strand, within ABZR87_RS04205 at 878.537 kb on + strand, within ABZR87_RS04205 at 878.537 kb on + strand, within ABZR87_RS04205 at 878.538 kb on - strand, within ABZR87_RS04205 at 878.538 kb on - strand, within ABZR87_RS04205 at 878.538 kb on - strand, within ABZR87_RS04205 at 878.538 kb on - strand, within ABZR87_RS04205 at 878.538 kb on - strand, within ABZR87_RS04205 at 878.538 kb on - strand, within ABZR87_RS04205 at 878.585 kb on + strand, within ABZR87_RS04205 at 878.586 kb on - strand, within ABZR87_RS04205 at 878.586 kb on - strand, within ABZR87_RS04205 at 878.586 kb on - strand, within ABZR87_RS04205 at 878.669 kb on + strand, within ABZR87_RS04205 at 878.669 kb on + strand, within ABZR87_RS04205 at 878.669 kb on + strand, within ABZR87_RS04205 at 878.669 kb on + strand, within ABZR87_RS04205 at 878.669 kb on + strand, within ABZR87_RS04205 at 878.670 kb on - strand, within ABZR87_RS04205 at 878.670 kb on - strand, within ABZR87_RS04205 at 878.670 kb on - strand, within ABZR87_RS04205 at 878.670 kb on - strand, within ABZR87_RS04205 at 878.735 kb on + strand, within ABZR87_RS04205 at 878.736 kb on - strand, within ABZR87_RS04205 at 878.736 kb on - strand, within ABZR87_RS04205 at 878.778 kb on - strand, within ABZR87_RS04205 at 878.778 kb on - strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.826 kb on + strand, within ABZR87_RS04205 at 878.827 kb on - strand, within ABZR87_RS04205 at 878.827 kb on - strand, within ABZR87_RS04205 at 878.827 kb on - strand, within ABZR87_RS04205 at 878.916 kb on + strand, within ABZR87_RS04205 at 878.978 kb on + strand, within ABZR87_RS04205 at 878.979 kb on - strand, within ABZR87_RS04205 at 879.173 kb on + strand, within ABZR87_RS04205 at 879.173 kb on + strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.174 kb on - strand, within ABZR87_RS04205 at 879.179 kb on + strand, within ABZR87_RS04205 at 879.179 kb on + strand, within ABZR87_RS04205 at 879.180 kb on - strand, within ABZR87_RS04205 at 879.180 kb on - strand, within ABZR87_RS04205 at 879.180 kb on - strand, within ABZR87_RS04205 at 879.180 kb on - strand, within ABZR87_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 876,557 + ABZR87_RS04195 0.12 +0.6 876,558 - ABZR87_RS04195 0.12 +0.0 876,829 + ABZR87_RS04195 0.39 -1.0 876,830 - ABZR87_RS04195 0.39 +0.2 876,949 + ABZR87_RS04195 0.51 -0.6 876,949 + ABZR87_RS04195 0.51 -0.7 876,949 + ABZR87_RS04195 0.51 +0.3 876,949 + ABZR87_RS04195 0.51 -1.9 876,949 + ABZR87_RS04195 0.51 +0.4 876,949 + ABZR87_RS04195 0.51 +1.6 876,950 - ABZR87_RS04195 0.52 +0.3 876,950 - ABZR87_RS04195 0.52 +0.3 876,950 - ABZR87_RS04195 0.52 +0.7 876,950 - ABZR87_RS04195 0.52 +0.9 876,950 - ABZR87_RS04195 0.52 +1.5 876,950 - ABZR87_RS04195 0.52 -1.2 876,952 + ABZR87_RS04195 0.52 +0.5 876,953 - ABZR87_RS04195 0.52 -0.2 876,953 - ABZR87_RS04195 0.52 +0.4 876,953 - ABZR87_RS04195 0.52 -0.3 877,060 + ABZR87_RS04195 0.63 +1.5 877,060 + ABZR87_RS04195 0.63 -0.3 877,060 + ABZR87_RS04195 0.63 -0.4 877,060 + ABZR87_RS04195 0.63 -0.1 877,060 + ABZR87_RS04195 0.63 -0.8 877,060 + ABZR87_RS04195 0.63 -0.5 877,060 + ABZR87_RS04195 0.63 +0.4 877,061 - ABZR87_RS04195 0.63 +0.6 877,061 - ABZR87_RS04195 0.63 -1.7 877,061 - ABZR87_RS04195 0.63 +3.4 877,061 - ABZR87_RS04195 0.63 -0.8 877,099 + ABZR87_RS04195 0.67 -0.3 877,099 + ABZR87_RS04195 0.67 -0.2 877,099 + ABZR87_RS04195 0.67 -1.5 877,099 + ABZR87_RS04195 0.67 +0.5 877,099 + ABZR87_RS04195 0.67 -1.0 877,099 + ABZR87_RS04195 0.67 -1.7 877,099 + ABZR87_RS04195 0.67 +0.0 877,099 + ABZR87_RS04195 0.67 -0.6 877,099 + ABZR87_RS04195 0.67 +0.0 877,100 - ABZR87_RS04195 0.67 -0.3 877,100 - ABZR87_RS04195 0.67 +0.1 877,100 - ABZR87_RS04195 0.67 -0.2 877,213 + ABZR87_RS04195 0.78 -0.1 877,214 - ABZR87_RS04195 0.78 +0.4 877,225 + ABZR87_RS04195 0.79 -0.3 877,225 + ABZR87_RS04195 0.79 -1.2 877,226 - ABZR87_RS04195 0.80 -0.1 877,226 - ABZR87_RS04195 0.80 +1.2 877,276 + ABZR87_RS04195 0.85 -1.2 877,394 - -0.1 877,402 + +4.4 877,402 + +0.8 877,402 + -0.5 877,402 + -0.0 877,402 + -1.0 877,402 + -0.9 877,402 + +0.6 877,403 - +5.0 877,403 - -0.2 877,403 - -1.4 877,403 - +0.4 877,403 - -2.2 877,531 - ABZR87_RS04200 0.10 -2.0 877,726 - ABZR87_RS04200 0.32 -1.0 877,726 - ABZR87_RS04200 0.32 -0.0 877,803 + ABZR87_RS04200 0.41 -1.8 877,804 - ABZR87_RS04200 0.41 +0.1 877,884 + ABZR87_RS04200 0.50 -1.6 877,885 - ABZR87_RS04200 0.50 -0.4 877,944 + ABZR87_RS04200 0.57 +0.1 877,944 + ABZR87_RS04200 0.57 -0.2 877,945 - ABZR87_RS04200 0.57 +1.6 877,965 + ABZR87_RS04200 0.59 -0.3 877,965 + ABZR87_RS04200 0.59 -0.8 877,965 + ABZR87_RS04200 0.59 +0.8 877,965 + ABZR87_RS04200 0.59 +0.2 877,966 - ABZR87_RS04200 0.59 -0.9 877,966 - ABZR87_RS04200 0.59 -0.2 877,966 - ABZR87_RS04200 0.59 -0.5 878,025 + ABZR87_RS04200 0.66 +0.0 878,026 - ABZR87_RS04200 0.66 -0.6 878,043 + ABZR87_RS04200 0.68 -0.5 878,043 + ABZR87_RS04200 0.68 -0.6 878,044 - ABZR87_RS04200 0.68 +0.3 878,044 - ABZR87_RS04200 0.68 +1.9 878,044 - ABZR87_RS04200 0.68 -1.5 878,124 + ABZR87_RS04200 0.77 -0.9 878,140 - ABZR87_RS04200 0.79 +0.3 878,253 + -0.6 878,253 + +2.9 878,253 + -0.4 878,253 + -1.6 878,253 + +0.2 878,253 + +0.4 878,253 + +3.5 878,253 + -1.4 878,254 - -1.3 878,254 - +0.1 878,401 - +0.5 878,489 + +1.4 878,490 - +0.1 878,490 - -0.6 878,537 + ABZR87_RS04205 0.11 +1.7 878,537 + ABZR87_RS04205 0.11 +0.6 878,537 + ABZR87_RS04205 0.11 -0.9 878,537 + ABZR87_RS04205 0.11 -2.6 878,537 + ABZR87_RS04205 0.11 -0.2 878,537 + ABZR87_RS04205 0.11 -0.6 878,538 - ABZR87_RS04205 0.11 -0.4 878,538 - ABZR87_RS04205 0.11 -0.7 878,538 - ABZR87_RS04205 0.11 +1.8 878,538 - ABZR87_RS04205 0.11 +2.7 878,538 - ABZR87_RS04205 0.11 -0.6 878,538 - ABZR87_RS04205 0.11 -0.5 878,585 + ABZR87_RS04205 0.15 +0.6 878,586 - ABZR87_RS04205 0.15 -1.3 878,586 - ABZR87_RS04205 0.15 -0.4 878,586 - ABZR87_RS04205 0.15 +0.0 878,669 + ABZR87_RS04205 0.22 -1.3 878,669 + ABZR87_RS04205 0.22 -1.5 878,669 + ABZR87_RS04205 0.22 -0.4 878,669 + ABZR87_RS04205 0.22 +3.7 878,669 + ABZR87_RS04205 0.22 -0.8 878,670 - ABZR87_RS04205 0.22 -0.0 878,670 - ABZR87_RS04205 0.22 +3.0 878,670 - ABZR87_RS04205 0.22 +0.6 878,670 - ABZR87_RS04205 0.22 +1.0 878,735 + ABZR87_RS04205 0.27 +1.3 878,736 - ABZR87_RS04205 0.27 +0.3 878,736 - ABZR87_RS04205 0.27 +3.5 878,778 - ABZR87_RS04205 0.31 -2.8 878,778 - ABZR87_RS04205 0.31 +1.9 878,826 + ABZR87_RS04205 0.35 +2.2 878,826 + ABZR87_RS04205 0.35 +0.6 878,826 + ABZR87_RS04205 0.35 -1.3 878,826 + ABZR87_RS04205 0.35 +0.3 878,826 + ABZR87_RS04205 0.35 +7.4 878,826 + ABZR87_RS04205 0.35 +2.3 878,826 + ABZR87_RS04205 0.35 +0.4 878,826 + ABZR87_RS04205 0.35 -0.4 878,827 - ABZR87_RS04205 0.35 -0.1 878,827 - ABZR87_RS04205 0.35 +0.3 878,827 - ABZR87_RS04205 0.35 -0.6 878,916 + ABZR87_RS04205 0.42 +0.1 878,978 + ABZR87_RS04205 0.47 +0.4 878,979 - ABZR87_RS04205 0.47 +0.8 879,173 + ABZR87_RS04205 0.63 -0.3 879,173 + ABZR87_RS04205 0.63 -1.8 879,174 - ABZR87_RS04205 0.63 +1.4 879,174 - ABZR87_RS04205 0.63 -0.9 879,174 - ABZR87_RS04205 0.63 -2.5 879,174 - ABZR87_RS04205 0.63 +0.0 879,174 - ABZR87_RS04205 0.63 +0.1 879,174 - ABZR87_RS04205 0.63 -1.0 879,174 - ABZR87_RS04205 0.63 +0.0 879,179 + ABZR87_RS04205 0.64 -0.9 879,179 + ABZR87_RS04205 0.64 -0.7 879,180 - ABZR87_RS04205 0.64 +0.8 879,180 - ABZR87_RS04205 0.64 -0.2 879,180 - ABZR87_RS04205 0.64 -0.9 879,180 - ABZR87_RS04205 0.64 +0.0
Or see this region's nucleotide sequence