Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03985

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03980 and ABZR87_RS03985 are separated by 94 nucleotidesABZR87_RS03985 and ABZR87_RS03990 are separated by 217 nucleotidesABZR87_RS03990 and ABZR87_RS03995 are separated by 12 nucleotides ABZR87_RS03980: ABZR87_RS03980 - uroporphyrinogen decarboxylase, at 835,588 to 836,682 _RS03980 ABZR87_RS03985: ABZR87_RS03985 - cupin domain-containing protein, at 836,777 to 837,262 _RS03985 ABZR87_RS03990: ABZR87_RS03990 - GFA family protein, at 837,480 to 837,827 _RS03990 ABZR87_RS03995: ABZR87_RS03995 - Rieske 2Fe-2S domain-containing protein, at 837,840 to 838,868 _RS03995 Position (kb) 836 837 838Strain fitness (log2 ratio) -2 -1 0 1 2 3at 836.713 kb on + strandat 836.713 kb on + strandat 836.713 kb on + strandat 836.713 kb on + strandat 836.713 kb on + strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.714 kb on - strandat 836.730 kb on - strandat 836.795 kb on - strandat 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.976 kb on + strand, within ABZR87_RS03985at 836.976 kb on + strand, within ABZR87_RS03985at 836.977 kb on - strand, within ABZR87_RS03985at 836.977 kb on - strand, within ABZR87_RS03985at 836.977 kb on - strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.376 kb on + strandat 837.376 kb on + strandat 837.376 kb on + strandat 837.376 kb on + strandat 837.382 kb on + strandat 837.382 kb on + strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.429 kb on + strandat 837.429 kb on + strandat 837.429 kb on + strandat 837.429 kb on + strandat 837.430 kb on - strandat 837.430 kb on - strandat 837.431 kb on + strandat 837.431 kb on + strandat 837.432 kb on - strandat 837.432 kb on - strandat 837.432 kb on - strandat 837.488 kb on + strandat 837.488 kb on + strandat 837.488 kb on + strandat 837.489 kb on - strandat 837.489 kb on - strandat 837.489 kb on - strandat 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.711 kb on + strand, within ABZR87_RS03990at 837.711 kb on + strand, within ABZR87_RS03990at 837.711 kb on + strand, within ABZR87_RS03990at 837.712 kb on - strand, within ABZR87_RS03990at 837.825 kb on + strandat 837.826 kb on - strandat 837.841 kb on + strandat 837.841 kb on + strandat 837.842 kb on - strandat 838.021 kb on + strand, within ABZR87_RS03995at 838.022 kb on - strand, within ABZR87_RS03995at 838.141 kb on + strand, within ABZR87_RS03995at 838.142 kb on - strand, within ABZR87_RS03995at 838.142 kb on - strand, within ABZR87_RS03995at 838.142 kb on - strand, within ABZR87_RS03995at 838.162 kb on + strand, within ABZR87_RS03995at 838.163 kb on - strand, within ABZR87_RS03995at 838.169 kb on - strand, within ABZR87_RS03995at 838.240 kb on - strand, within ABZR87_RS03995at 838.240 kb on - strand, within ABZR87_RS03995

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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836,713 + -0.2
836,713 + +1.1
836,713 + +0.4
836,713 + -0.6
836,713 + +1.2
836,714 - +0.2
836,714 - +3.0
836,714 - -2.1
836,714 - -1.8
836,714 - -0.2
836,714 - -0.3
836,714 - +0.7
836,714 - -1.2
836,730 - +1.3
836,795 - +1.4
836,958 + ABZR87_RS03985 0.37 +0.2
836,958 + ABZR87_RS03985 0.37 +0.1
836,958 + ABZR87_RS03985 0.37 +1.8
836,958 + ABZR87_RS03985 0.37 -0.6
836,958 + ABZR87_RS03985 0.37 -0.3
836,958 + ABZR87_RS03985 0.37 +0.6
836,959 - ABZR87_RS03985 0.37 -1.4
836,959 - ABZR87_RS03985 0.37 -0.6
836,959 - ABZR87_RS03985 0.37 -0.9
836,959 - ABZR87_RS03985 0.37 -1.4
836,959 - ABZR87_RS03985 0.37 -0.9
836,959 - ABZR87_RS03985 0.37 +1.1
836,959 - ABZR87_RS03985 0.37 -0.3
836,976 + ABZR87_RS03985 0.41 +0.3
836,976 + ABZR87_RS03985 0.41 +0.4
836,977 - ABZR87_RS03985 0.41 +0.1
836,977 - ABZR87_RS03985 0.41 +0.5
836,977 - ABZR87_RS03985 0.41 +0.4
836,980 + ABZR87_RS03985 0.42 +0.1
836,980 + ABZR87_RS03985 0.42 +0.3
836,980 + ABZR87_RS03985 0.42 +0.5
836,980 + ABZR87_RS03985 0.42 +0.2
836,980 + ABZR87_RS03985 0.42 +3.0
836,980 + ABZR87_RS03985 0.42 -1.2
836,980 + ABZR87_RS03985 0.42 +2.3
836,980 + ABZR87_RS03985 0.42 +0.9
836,980 + ABZR87_RS03985 0.42 +0.5
836,980 + ABZR87_RS03985 0.42 -0.2
836,980 + ABZR87_RS03985 0.42 -0.4
836,980 + ABZR87_RS03985 0.42 +0.1
836,980 + ABZR87_RS03985 0.42 -0.3
836,980 + ABZR87_RS03985 0.42 -0.1
836,981 - ABZR87_RS03985 0.42 +0.8
836,981 - ABZR87_RS03985 0.42 -0.2
836,981 - ABZR87_RS03985 0.42 -0.1
836,981 - ABZR87_RS03985 0.42 -0.1
836,981 - ABZR87_RS03985 0.42 -0.9
836,981 - ABZR87_RS03985 0.42 -1.1
836,981 - ABZR87_RS03985 0.42 +2.4
836,981 - ABZR87_RS03985 0.42 -1.0
836,981 - ABZR87_RS03985 0.42 +1.2
836,981 - ABZR87_RS03985 0.42 -0.3
836,981 - ABZR87_RS03985 0.42 -0.7
836,981 - ABZR87_RS03985 0.42 +2.6
836,981 - ABZR87_RS03985 0.42 +0.5
836,981 - ABZR87_RS03985 0.42 +0.8
837,061 + ABZR87_RS03985 0.58 +1.6
837,061 + ABZR87_RS03985 0.58 +1.0
837,061 + ABZR87_RS03985 0.58 -0.5
837,061 + ABZR87_RS03985 0.58 +0.2
837,061 + ABZR87_RS03985 0.58 +1.1
837,061 + ABZR87_RS03985 0.58 +0.9
837,062 - ABZR87_RS03985 0.59 -0.4
837,062 - ABZR87_RS03985 0.59 +2.0
837,062 - ABZR87_RS03985 0.59 -0.3
837,062 - ABZR87_RS03985 0.59 +1.4
837,062 - ABZR87_RS03985 0.59 -0.5
837,062 - ABZR87_RS03985 0.59 -0.1
837,376 + -0.5
837,376 + -0.5
837,376 + -0.2
837,376 + -1.2
837,382 + +0.8
837,382 + -1.9
837,383 - +0.8
837,383 - +0.2
837,383 - -1.1
837,383 - -1.3
837,383 - +1.0
837,383 - +0.3
837,429 + -0.8
837,429 + +1.2
837,429 + +0.8
837,429 + -1.0
837,430 - +0.3
837,430 - -1.6
837,431 + +1.8
837,431 + -0.4
837,432 - -0.0
837,432 - +0.4
837,432 - -0.2
837,488 + +0.6
837,488 + -1.8
837,488 + +0.2
837,489 - +1.6
837,489 - +2.5
837,489 - +1.4
837,651 + ABZR87_RS03990 0.49 -0.9
837,651 + ABZR87_RS03990 0.49 +0.1
837,651 + ABZR87_RS03990 0.49 -0.1
837,651 + ABZR87_RS03990 0.49 -0.6
837,651 + ABZR87_RS03990 0.49 +0.5
837,651 + ABZR87_RS03990 0.49 -0.2
837,651 + ABZR87_RS03990 0.49 -0.6
837,651 + ABZR87_RS03990 0.49 +0.3
837,652 - ABZR87_RS03990 0.49 +0.0
837,652 - ABZR87_RS03990 0.49 -0.6
837,652 - ABZR87_RS03990 0.49 +0.6
837,652 - ABZR87_RS03990 0.49 +0.3
837,652 - ABZR87_RS03990 0.49 -0.3
837,711 + ABZR87_RS03990 0.66 +0.4
837,711 + ABZR87_RS03990 0.66 -1.4
837,711 + ABZR87_RS03990 0.66 +0.4
837,712 - ABZR87_RS03990 0.67 +0.4
837,825 + -1.7
837,826 - -0.3
837,841 + -0.3
837,841 + +0.8
837,842 - +0.6
838,021 + ABZR87_RS03995 0.18 +0.1
838,022 - ABZR87_RS03995 0.18 +2.5
838,141 + ABZR87_RS03995 0.29 -1.0
838,142 - ABZR87_RS03995 0.29 +0.6
838,142 - ABZR87_RS03995 0.29 +0.2
838,142 - ABZR87_RS03995 0.29 +1.8
838,162 + ABZR87_RS03995 0.31 -0.4
838,163 - ABZR87_RS03995 0.31 +1.0
838,169 - ABZR87_RS03995 0.32 -0.0
838,240 - ABZR87_RS03995 0.39 -1.1
838,240 - ABZR87_RS03995 0.39 -0.8

Or see this region's nucleotide sequence