Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03955 and ABZR87_RS03960 are separated by 9 nucleotides ABZR87_RS03960 and ABZR87_RS03965 are separated by 198 nucleotides
ABZR87_RS03955: ABZR87_RS03955 - YbdK family carboxylate-amine ligase, at 824,150 to 825,283
_RS03955
ABZR87_RS03960: ABZR87_RS03960 - cation:proton antiporter, at 825,293 to 826,516
_RS03960
ABZR87_RS03965: ABZR87_RS03965 - branched-chain amino acid ABC transporter substrate-binding protein, at 826,715 to 827,860
_RS03965
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.445 kb on + strand, within ABZR87_RS03955 at 824.446 kb on - strand, within ABZR87_RS03955 at 824.454 kb on + strand, within ABZR87_RS03955 at 824.454 kb on + strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.515 kb on + strand, within ABZR87_RS03955 at 824.515 kb on + strand, within ABZR87_RS03955 at 824.516 kb on - strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.614 kb on - strand, within ABZR87_RS03955 at 824.614 kb on - strand, within ABZR87_RS03955 at 824.664 kb on + strand, within ABZR87_RS03955 at 824.664 kb on + strand, within ABZR87_RS03955 at 824.664 kb on + strand, within ABZR87_RS03955 at 824.811 kb on - strand, within ABZR87_RS03955 at 824.814 kb on + strand, within ABZR87_RS03955 at 824.814 kb on + strand, within ABZR87_RS03955 at 824.815 kb on - strand, within ABZR87_RS03955 at 824.838 kb on + strand, within ABZR87_RS03955 at 824.838 kb on + strand, within ABZR87_RS03955 at 824.839 kb on - strand, within ABZR87_RS03955 at 824.839 kb on - strand, within ABZR87_RS03955 at 824.839 kb on - strand, within ABZR87_RS03955 at 824.910 kb on + strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.938 kb on - strand, within ABZR87_RS03955 at 825.147 kb on + strand, within ABZR87_RS03955 at 825.148 kb on - strand, within ABZR87_RS03955 at 825.148 kb on - strand, within ABZR87_RS03955 at 825.148 kb on - strand, within ABZR87_RS03955 at 825.201 kb on + strand at 825.201 kb on + strand at 825.201 kb on + strand at 825.202 kb on - strand at 825.202 kb on - strand at 825.202 kb on - strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.295 kb on - strand at 825.295 kb on - strand at 825.426 kb on + strand, within ABZR87_RS03960 at 825.426 kb on + strand, within ABZR87_RS03960 at 825.439 kb on + strand, within ABZR87_RS03960 at 825.825 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.912 kb on + strand, within ABZR87_RS03960 at 825.913 kb on - strand, within ABZR87_RS03960 at 825.949 kb on - strand, within ABZR87_RS03960 at 825.955 kb on + strand, within ABZR87_RS03960 at 825.955 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 826.369 kb on - strand, within ABZR87_RS03960 at 826.519 kb on + strand at 826.585 kb on - strand at 826.591 kb on + strand at 826.688 kb on - strand at 826.716 kb on + strand at 826.717 kb on - strand at 826.717 kb on - strand at 826.717 kb on - strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.767 kb on + strand at 826.768 kb on - strand at 826.768 kb on - strand at 826.809 kb on + strand at 826.809 kb on + strand at 826.810 kb on - strand at 826.810 kb on - strand at 826.815 kb on + strand at 826.815 kb on + strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.816 kb on - strand at 826.866 kb on + strand, within ABZR87_RS03965 at 826.866 kb on + strand, within ABZR87_RS03965 at 826.866 kb on + strand, within ABZR87_RS03965 at 826.867 kb on - strand, within ABZR87_RS03965 at 826.867 kb on - strand, within ABZR87_RS03965 at 826.867 kb on - strand, within ABZR87_RS03965 at 826.929 kb on + strand, within ABZR87_RS03965 at 826.929 kb on + strand, within ABZR87_RS03965 at 826.930 kb on - strand, within ABZR87_RS03965 at 826.930 kb on - strand, within ABZR87_RS03965 at 826.930 kb on - strand, within ABZR87_RS03965 at 826.936 kb on - strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.944 kb on + strand, within ABZR87_RS03965 at 826.945 kb on - strand, within ABZR87_RS03965 at 826.977 kb on + strand, within ABZR87_RS03965 at 826.977 kb on + strand, within ABZR87_RS03965 at 826.977 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.989 kb on + strand, within ABZR87_RS03965 at 826.990 kb on - strand, within ABZR87_RS03965 at 827.181 kb on + strand, within ABZR87_RS03965 at 827.181 kb on + strand, within ABZR87_RS03965 at 827.181 kb on + strand, within ABZR87_RS03965 at 827.182 kb on - strand, within ABZR87_RS03965 at 827.328 kb on + strand, within ABZR87_RS03965 at 827.328 kb on + strand, within ABZR87_RS03965 at 827.329 kb on - strand, within ABZR87_RS03965 at 827.364 kb on + strand, within ABZR87_RS03965 at 827.364 kb on + strand, within ABZR87_RS03965 at 827.445 kb on + strand, within ABZR87_RS03965 at 827.446 kb on - strand, within ABZR87_RS03965 at 827.446 kb on - strand, within ABZR87_RS03965 at 827.446 kb on - strand, within ABZR87_RS03965 at 827.460 kb on + strand, within ABZR87_RS03965 at 827.460 kb on + strand, within ABZR87_RS03965 at 827.460 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.508 kb on + strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965 at 827.509 kb on - strand, within ABZR87_RS03965
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 824,397 + ABZR87_RS03955 0.22 +0.1 824,397 + ABZR87_RS03955 0.22 +0.1 824,397 + ABZR87_RS03955 0.22 -0.4 824,398 - ABZR87_RS03955 0.22 -0.6 824,398 - ABZR87_RS03955 0.22 +0.1 824,398 - ABZR87_RS03955 0.22 +3.2 824,398 - ABZR87_RS03955 0.22 +0.8 824,445 + ABZR87_RS03955 0.26 +1.0 824,446 - ABZR87_RS03955 0.26 -0.1 824,454 + ABZR87_RS03955 0.27 +1.3 824,454 + ABZR87_RS03955 0.27 -0.3 824,455 - ABZR87_RS03955 0.27 +1.0 824,455 - ABZR87_RS03955 0.27 +1.2 824,455 - ABZR87_RS03955 0.27 -0.4 824,455 - ABZR87_RS03955 0.27 -0.0 824,515 + ABZR87_RS03955 0.32 -1.1 824,515 + ABZR87_RS03955 0.32 -0.2 824,516 - ABZR87_RS03955 0.32 -1.0 824,517 + ABZR87_RS03955 0.32 +2.4 824,517 + ABZR87_RS03955 0.32 +0.1 824,517 + ABZR87_RS03955 0.32 +1.2 824,517 + ABZR87_RS03955 0.32 -1.1 824,517 + ABZR87_RS03955 0.32 +2.4 824,517 + ABZR87_RS03955 0.32 -0.6 824,517 + ABZR87_RS03955 0.32 +0.0 824,518 - ABZR87_RS03955 0.32 +1.1 824,518 - ABZR87_RS03955 0.32 -0.2 824,518 - ABZR87_RS03955 0.32 +1.3 824,613 + ABZR87_RS03955 0.41 -1.3 824,613 + ABZR87_RS03955 0.41 -0.9 824,613 + ABZR87_RS03955 0.41 -0.6 824,613 + ABZR87_RS03955 0.41 -2.0 824,613 + ABZR87_RS03955 0.41 -0.9 824,614 - ABZR87_RS03955 0.41 -0.3 824,614 - ABZR87_RS03955 0.41 +0.9 824,664 + ABZR87_RS03955 0.45 +2.0 824,664 + ABZR87_RS03955 0.45 +1.2 824,664 + ABZR87_RS03955 0.45 +3.4 824,811 - ABZR87_RS03955 0.58 +2.4 824,814 + ABZR87_RS03955 0.59 +0.0 824,814 + ABZR87_RS03955 0.59 -0.0 824,815 - ABZR87_RS03955 0.59 +0.0 824,838 + ABZR87_RS03955 0.61 -0.9 824,838 + ABZR87_RS03955 0.61 -1.0 824,839 - ABZR87_RS03955 0.61 +0.7 824,839 - ABZR87_RS03955 0.61 -0.5 824,839 - ABZR87_RS03955 0.61 +0.5 824,910 + ABZR87_RS03955 0.67 +0.7 824,917 - ABZR87_RS03955 0.68 +0.6 824,917 - ABZR87_RS03955 0.68 +0.6 824,917 - ABZR87_RS03955 0.68 +0.1 824,917 - ABZR87_RS03955 0.68 +1.6 824,931 + ABZR87_RS03955 0.69 -1.9 824,931 + ABZR87_RS03955 0.69 +0.8 824,931 + ABZR87_RS03955 0.69 +2.9 824,931 + ABZR87_RS03955 0.69 -0.4 824,931 + ABZR87_RS03955 0.69 +1.0 824,932 - ABZR87_RS03955 0.69 +0.1 824,932 - ABZR87_RS03955 0.69 -0.1 824,932 - ABZR87_RS03955 0.69 +2.7 824,932 - ABZR87_RS03955 0.69 -0.8 824,932 - ABZR87_RS03955 0.69 +1.0 824,932 - ABZR87_RS03955 0.69 +0.5 824,932 - ABZR87_RS03955 0.69 +1.2 824,938 - ABZR87_RS03955 0.69 +1.9 825,147 + ABZR87_RS03955 0.88 +0.4 825,148 - ABZR87_RS03955 0.88 +0.5 825,148 - ABZR87_RS03955 0.88 +2.0 825,148 - ABZR87_RS03955 0.88 -1.0 825,201 + +0.2 825,201 + +3.4 825,201 + +0.6 825,202 - +0.3 825,202 - +0.3 825,202 - -0.2 825,294 + +1.3 825,294 + -0.4 825,294 + +0.6 825,294 + -1.2 825,294 + +1.3 825,295 - -0.8 825,295 - +0.5 825,426 + ABZR87_RS03960 0.11 -1.7 825,426 + ABZR87_RS03960 0.11 +0.2 825,439 + ABZR87_RS03960 0.12 -0.9 825,825 + ABZR87_RS03960 0.43 +0.2 825,852 + ABZR87_RS03960 0.46 +0.9 825,852 + ABZR87_RS03960 0.46 +5.0 825,852 + ABZR87_RS03960 0.46 +1.2 825,852 + ABZR87_RS03960 0.46 +3.1 825,853 - ABZR87_RS03960 0.46 -0.3 825,853 - ABZR87_RS03960 0.46 -0.2 825,853 - ABZR87_RS03960 0.46 +4.2 825,853 - ABZR87_RS03960 0.46 -0.8 825,853 - ABZR87_RS03960 0.46 +1.0 825,912 + ABZR87_RS03960 0.51 +0.4 825,913 - ABZR87_RS03960 0.51 +0.1 825,949 - ABZR87_RS03960 0.54 +1.2 825,955 + ABZR87_RS03960 0.54 -0.6 825,955 + ABZR87_RS03960 0.54 -0.2 825,996 + ABZR87_RS03960 0.57 -1.8 825,996 + ABZR87_RS03960 0.57 +0.5 825,996 + ABZR87_RS03960 0.57 +0.8 825,996 + ABZR87_RS03960 0.57 +0.1 825,996 + ABZR87_RS03960 0.57 +0.1 825,996 + ABZR87_RS03960 0.57 -1.2 825,996 + ABZR87_RS03960 0.57 -0.1 825,997 - ABZR87_RS03960 0.58 +0.2 825,997 - ABZR87_RS03960 0.58 -0.9 825,997 - ABZR87_RS03960 0.58 -0.1 826,369 - ABZR87_RS03960 0.88 -0.0 826,519 + -0.0 826,585 - -1.6 826,591 + +0.2 826,688 - +0.5 826,716 + +3.4 826,717 - -2.5 826,717 - +1.3 826,717 - -1.7 826,767 + -0.5 826,767 + -0.2 826,767 + +4.1 826,767 + +0.5 826,767 + +0.0 826,768 - -0.3 826,768 - -1.2 826,809 + -0.9 826,809 + -1.5 826,810 - +0.4 826,810 - +0.3 826,815 + +0.4 826,815 + -0.8 826,816 - +0.8 826,816 - -0.6 826,816 - +1.2 826,816 - -0.0 826,816 - -0.4 826,866 + ABZR87_RS03965 0.13 +0.8 826,866 + ABZR87_RS03965 0.13 -0.7 826,866 + ABZR87_RS03965 0.13 +1.0 826,867 - ABZR87_RS03965 0.13 +0.2 826,867 - ABZR87_RS03965 0.13 +0.8 826,867 - ABZR87_RS03965 0.13 -1.2 826,929 + ABZR87_RS03965 0.19 +5.1 826,929 + ABZR87_RS03965 0.19 +0.8 826,930 - ABZR87_RS03965 0.19 +1.4 826,930 - ABZR87_RS03965 0.19 -1.8 826,930 - ABZR87_RS03965 0.19 -1.3 826,936 - ABZR87_RS03965 0.19 -0.6 826,944 + ABZR87_RS03965 0.20 +1.0 826,944 + ABZR87_RS03965 0.20 -0.1 826,944 + ABZR87_RS03965 0.20 +1.8 826,944 + ABZR87_RS03965 0.20 +1.3 826,945 - ABZR87_RS03965 0.20 +0.4 826,977 + ABZR87_RS03965 0.23 -0.8 826,977 + ABZR87_RS03965 0.23 +0.6 826,977 + ABZR87_RS03965 0.23 -0.9 826,989 + ABZR87_RS03965 0.24 -1.6 826,989 + ABZR87_RS03965 0.24 -0.0 826,989 + ABZR87_RS03965 0.24 -0.5 826,989 + ABZR87_RS03965 0.24 +0.2 826,989 + ABZR87_RS03965 0.24 +0.8 826,989 + ABZR87_RS03965 0.24 +0.6 826,989 + ABZR87_RS03965 0.24 -0.8 826,989 + ABZR87_RS03965 0.24 -1.0 826,989 + ABZR87_RS03965 0.24 +1.8 826,990 - ABZR87_RS03965 0.24 -1.1 827,181 + ABZR87_RS03965 0.41 +1.7 827,181 + ABZR87_RS03965 0.41 +1.1 827,181 + ABZR87_RS03965 0.41 +2.1 827,182 - ABZR87_RS03965 0.41 +1.0 827,328 + ABZR87_RS03965 0.53 -0.1 827,328 + ABZR87_RS03965 0.53 +1.3 827,329 - ABZR87_RS03965 0.54 -0.9 827,364 + ABZR87_RS03965 0.57 +1.0 827,364 + ABZR87_RS03965 0.57 +0.1 827,445 + ABZR87_RS03965 0.64 -0.2 827,446 - ABZR87_RS03965 0.64 +0.8 827,446 - ABZR87_RS03965 0.64 -0.1 827,446 - ABZR87_RS03965 0.64 -0.8 827,460 + ABZR87_RS03965 0.65 -0.4 827,460 + ABZR87_RS03965 0.65 -0.8 827,460 + ABZR87_RS03965 0.65 +1.9 827,508 + ABZR87_RS03965 0.69 -1.7 827,508 + ABZR87_RS03965 0.69 +0.5 827,508 + ABZR87_RS03965 0.69 -0.0 827,508 + ABZR87_RS03965 0.69 +3.4 827,508 + ABZR87_RS03965 0.69 +0.5 827,509 - ABZR87_RS03965 0.69 +3.4 827,509 - ABZR87_RS03965 0.69 +0.3 827,509 - ABZR87_RS03965 0.69 +0.7 827,509 - ABZR87_RS03965 0.69 -0.1 827,509 - ABZR87_RS03965 0.69 +0.4 827,509 - ABZR87_RS03965 0.69 -1.0
Or see this region's nucleotide sequence