Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03540 and ABZR87_RS03545 are separated by 281 nucleotides ABZR87_RS03545 and ABZR87_RS03550 are separated by 89 nucleotides ABZR87_RS03550 and ABZR87_RS03555 are separated by 103 nucleotides
ABZR87_RS03540: ABZR87_RS03540 - SDR family oxidoreductase, at 744,649 to 745,437
_RS03540
ABZR87_RS03545: ABZR87_RS03545 - MarR family transcriptional regulator, at 745,719 to 746,207
_RS03545
ABZR87_RS03550: ABZR87_RS03550 - response regulator transcription factor, at 746,297 to 746,995
_RS03550
ABZR87_RS03555: ABZR87_RS03555 - S1C family serine protease, at 747,099 to 748,025
_RS03555
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.977 kb on + strand, within ABZR87_RS03540 at 744.977 kb on + strand, within ABZR87_RS03540 at 745.067 kb on + strand, within ABZR87_RS03540 at 745.067 kb on + strand, within ABZR87_RS03540 at 745.067 kb on + strand, within ABZR87_RS03540 at 745.068 kb on - strand, within ABZR87_RS03540 at 745.363 kb on + strand at 745.364 kb on - strand at 745.364 kb on - strand at 745.455 kb on + strand at 745.456 kb on - strand at 745.456 kb on - strand at 745.456 kb on - strand at 745.456 kb on - strand at 745.499 kb on + strand at 745.500 kb on - strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.569 kb on + strand at 745.637 kb on - strand at 745.637 kb on - strand at 745.637 kb on - strand at 745.682 kb on + strand at 745.682 kb on + strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.777 kb on - strand, within ABZR87_RS03545 at 745.803 kb on - strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 746.091 kb on + strand, within ABZR87_RS03545 at 746.091 kb on + strand, within ABZR87_RS03545 at 746.091 kb on + strand, within ABZR87_RS03545 at 746.092 kb on - strand, within ABZR87_RS03545 at 746.199 kb on - strand at 746.199 kb on - strand at 746.199 kb on - strand at 746.805 kb on + strand, within ABZR87_RS03550 at 746.805 kb on + strand, within ABZR87_RS03550 at 746.805 kb on + strand, within ABZR87_RS03550 at 746.805 kb on + strand, within ABZR87_RS03550 at 746.806 kb on - strand, within ABZR87_RS03550 at 746.806 kb on - strand, within ABZR87_RS03550 at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.075 kb on + strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.134 kb on - strand at 747.151 kb on + strand at 747.206 kb on - strand, within ABZR87_RS03555 at 747.206 kb on - strand, within ABZR87_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 744,728 + ABZR87_RS03540 0.10 +2.8 744,728 + ABZR87_RS03540 0.10 -1.7 744,728 + ABZR87_RS03540 0.10 +3.5 744,728 + ABZR87_RS03540 0.10 -0.3 744,728 + ABZR87_RS03540 0.10 +1.5 744,728 + ABZR87_RS03540 0.10 +1.1 744,728 + ABZR87_RS03540 0.10 -1.4 744,728 + ABZR87_RS03540 0.10 +1.8 744,728 + ABZR87_RS03540 0.10 -1.1 744,728 + ABZR87_RS03540 0.10 -1.3 744,728 + ABZR87_RS03540 0.10 -1.9 744,728 + ABZR87_RS03540 0.10 +0.1 744,729 - ABZR87_RS03540 0.10 -0.4 744,729 - ABZR87_RS03540 0.10 -1.2 744,729 - ABZR87_RS03540 0.10 +0.2 744,729 - ABZR87_RS03540 0.10 -1.5 744,729 - ABZR87_RS03540 0.10 -0.1 744,729 - ABZR87_RS03540 0.10 -1.1 744,729 - ABZR87_RS03540 0.10 -0.4 744,729 - ABZR87_RS03540 0.10 +0.7 744,729 - ABZR87_RS03540 0.10 -0.7 744,729 - ABZR87_RS03540 0.10 -1.1 744,729 - ABZR87_RS03540 0.10 +0.2 744,977 + ABZR87_RS03540 0.42 +0.1 744,977 + ABZR87_RS03540 0.42 -0.2 745,067 + ABZR87_RS03540 0.53 +0.3 745,067 + ABZR87_RS03540 0.53 +0.4 745,067 + ABZR87_RS03540 0.53 +2.8 745,068 - ABZR87_RS03540 0.53 +2.8 745,363 + +0.6 745,364 - -0.2 745,364 - +6.6 745,455 + +0.0 745,456 - +0.2 745,456 - -0.5 745,456 - +0.5 745,456 - +8.3 745,499 + -0.2 745,500 - +2.0 745,524 + +1.4 745,524 + +0.5 745,524 + +0.4 745,524 + -0.9 745,524 + +0.2 745,524 + +0.6 745,524 + +0.7 745,524 + +4.6 745,524 + +0.4 745,525 - +0.2 745,525 - +0.4 745,525 - -1.7 745,525 - +2.1 745,525 - -0.7 745,525 - -0.4 745,525 - -0.6 745,525 - +0.9 745,525 - +0.6 745,525 - -2.1 745,569 + +0.2 745,637 - -1.9 745,637 - -2.2 745,637 - -0.4 745,682 + +2.7 745,682 + +1.6 745,683 - -0.3 745,683 - -0.3 745,683 - +0.7 745,683 - -0.2 745,683 - +0.7 745,683 - +0.7 745,732 + +0.3 745,732 + -0.9 745,732 + -0.5 745,732 + -0.3 745,732 + -1.5 745,732 + -0.7 745,732 + +0.6 745,733 - -0.0 745,733 - -0.1 745,733 - +1.3 745,733 - +0.2 745,733 - -1.1 745,777 - ABZR87_RS03545 0.12 -0.6 745,803 - ABZR87_RS03545 0.17 +1.0 745,911 + ABZR87_RS03545 0.39 +0.3 745,911 + ABZR87_RS03545 0.39 +0.3 745,911 + ABZR87_RS03545 0.39 +1.8 745,911 + ABZR87_RS03545 0.39 -0.7 745,911 + ABZR87_RS03545 0.39 +1.2 745,911 + ABZR87_RS03545 0.39 +1.7 745,911 + ABZR87_RS03545 0.39 -1.5 745,912 - ABZR87_RS03545 0.39 +1.8 745,912 - ABZR87_RS03545 0.39 +0.5 745,912 - ABZR87_RS03545 0.39 -1.6 745,912 - ABZR87_RS03545 0.39 -0.7 745,912 - ABZR87_RS03545 0.39 +3.3 745,912 - ABZR87_RS03545 0.39 +0.1 745,912 - ABZR87_RS03545 0.39 -0.0 745,965 + ABZR87_RS03545 0.50 +0.6 745,965 + ABZR87_RS03545 0.50 +1.8 745,965 + ABZR87_RS03545 0.50 -1.4 745,965 + ABZR87_RS03545 0.50 +0.0 745,965 + ABZR87_RS03545 0.50 -0.4 745,966 - ABZR87_RS03545 0.51 +2.5 745,966 - ABZR87_RS03545 0.51 -2.7 745,966 - ABZR87_RS03545 0.51 +0.2 745,966 - ABZR87_RS03545 0.51 -1.2 746,091 + ABZR87_RS03545 0.76 +0.3 746,091 + ABZR87_RS03545 0.76 +4.4 746,091 + ABZR87_RS03545 0.76 +0.7 746,092 - ABZR87_RS03545 0.76 +0.3 746,199 - -0.6 746,199 - -1.0 746,199 - -0.8 746,805 + ABZR87_RS03550 0.73 +0.1 746,805 + ABZR87_RS03550 0.73 +1.8 746,805 + ABZR87_RS03550 0.73 +0.5 746,805 + ABZR87_RS03550 0.73 +0.6 746,806 - ABZR87_RS03550 0.73 +0.9 746,806 - ABZR87_RS03550 0.73 -0.3 747,036 + +1.4 747,036 + +0.0 747,036 + +0.4 747,036 + +1.5 747,036 + +2.1 747,036 + -0.5 747,036 + +0.8 747,036 + -1.0 747,037 - +0.1 747,037 - -1.9 747,037 - -0.8 747,037 - +0.6 747,037 - +1.0 747,037 - -2.2 747,037 - +0.7 747,071 + -0.2 747,071 + -0.4 747,071 + -0.0 747,071 + -0.4 747,071 + -0.0 747,072 - -0.9 747,072 - +1.8 747,072 - +0.1 747,072 - +2.1 747,072 - +0.7 747,072 - -0.4 747,072 - -0.3 747,072 - +0.6 747,072 - +0.6 747,072 - +5.8 747,072 - -0.6 747,072 - +2.0 747,072 - -0.3 747,074 + +1.1 747,074 + +1.1 747,074 + +0.3 747,074 + +0.7 747,074 + +0.2 747,074 + +0.4 747,075 + +2.3 747,075 - +0.7 747,075 - -0.3 747,075 - -1.1 747,075 - -0.2 747,134 - -2.0 747,151 + -0.5 747,206 - ABZR87_RS03555 0.12 -0.0 747,206 - ABZR87_RS03555 0.12 -0.2
Or see this region's nucleotide sequence