Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02435

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02430 and ABZR87_RS02435 overlap by 8 nucleotidesABZR87_RS02435 and ABZR87_RS02440 are separated by 84 nucleotidesABZR87_RS02440 and ABZR87_RS02445 are separated by 61 nucleotides ABZR87_RS02430: ABZR87_RS02430 - iron ABC transporter permease, at 519,304 to 521,115 _RS02430 ABZR87_RS02435: ABZR87_RS02435 - ABC transporter ATP-binding protein, at 521,108 to 522,193 _RS02435 ABZR87_RS02440: ABZR87_RS02440 - twin-arginine translocase subunit TatC, at 522,278 to 523,081 _RS02440 ABZR87_RS02445: ABZR87_RS02445 - Sec-independent protein translocase protein TatB, at 523,143 to 523,655 _RS02445 Position (kb) 521 522 523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 520.108 kb on + strand, within ABZR87_RS02430at 520.108 kb on + strand, within ABZR87_RS02430at 520.109 kb on - strand, within ABZR87_RS02430at 520.109 kb on - strand, within ABZR87_RS02430at 520.177 kb on + strand, within ABZR87_RS02430at 520.177 kb on + strand, within ABZR87_RS02430at 520.177 kb on + strand, within ABZR87_RS02430at 520.177 kb on + strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.178 kb on - strand, within ABZR87_RS02430at 520.489 kb on + strand, within ABZR87_RS02430at 520.489 kb on + strand, within ABZR87_RS02430at 520.489 kb on + strand, within ABZR87_RS02430at 520.489 kb on + strand, within ABZR87_RS02430at 520.489 kb on + strand, within ABZR87_RS02430at 520.490 kb on - strand, within ABZR87_RS02430at 520.490 kb on - strand, within ABZR87_RS02430at 520.549 kb on + strand, within ABZR87_RS02430at 520.549 kb on + strand, within ABZR87_RS02430at 520.744 kb on + strand, within ABZR87_RS02430at 520.745 kb on - strand, within ABZR87_RS02430at 520.745 kb on - strand, within ABZR87_RS02430at 520.745 kb on - strand, within ABZR87_RS02430at 520.745 kb on - strand, within ABZR87_RS02430at 520.766 kb on - strand, within ABZR87_RS02430at 520.766 kb on - strand, within ABZR87_RS02430at 520.766 kb on - strand, within ABZR87_RS02430at 520.889 kb on - strand, within ABZR87_RS02430at 520.939 kb on + strandat 520.954 kb on + strandat 520.954 kb on + strandat 520.954 kb on + strandat 520.954 kb on + strandat 520.954 kb on + strandat 520.955 kb on - strandat 520.955 kb on - strandat 520.955 kb on - strandat 520.955 kb on - strandat 520.955 kb on - strandat 521.023 kb on + strandat 521.144 kb on + strandat 521.144 kb on + strandat 521.145 kb on - strandat 521.145 kb on - strandat 521.287 kb on - strand, within ABZR87_RS02435at 521.287 kb on - strand, within ABZR87_RS02435at 521.375 kb on + strand, within ABZR87_RS02435at 521.376 kb on - strand, within ABZR87_RS02435at 521.376 kb on - strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.574 kb on - strand, within ABZR87_RS02435at 521.574 kb on - strand, within ABZR87_RS02435at 521.574 kb on - strand, within ABZR87_RS02435at 521.576 kb on - strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.146 kb on + strandat 522.146 kb on + strandat 522.147 kb on - strandat 522.147 kb on - strandat 522.147 kb on - strandat 522.183 kb on - strandat 522.369 kb on + strand, within ABZR87_RS02440at 522.369 kb on + strand, within ABZR87_RS02440at 522.369 kb on + strand, within ABZR87_RS02440at 522.369 kb on + strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.463 kb on - strand, within ABZR87_RS02440at 522.463 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.533 kb on + strand, within ABZR87_RS02440at 522.534 kb on - strand, within ABZR87_RS02440at 522.534 kb on - strand, within ABZR87_RS02440at 522.585 kb on + strand, within ABZR87_RS02440at 522.585 kb on + strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.630 kb on + strand, within ABZR87_RS02440at 522.630 kb on + strand, within ABZR87_RS02440at 522.630 kb on + strand, within ABZR87_RS02440at 522.631 kb on - strand, within ABZR87_RS02440at 522.631 kb on - strand, within ABZR87_RS02440at 522.672 kb on + strand, within ABZR87_RS02440at 522.673 kb on - strand, within ABZR87_RS02440at 522.673 kb on - strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.750 kb on + strand, within ABZR87_RS02440at 522.750 kb on + strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.783 kb on + strand, within ABZR87_RS02440at 522.783 kb on + strand, within ABZR87_RS02440at 522.784 kb on - strand, within ABZR87_RS02440at 522.942 kb on + strand, within ABZR87_RS02440at 522.942 kb on + strand, within ABZR87_RS02440

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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520,108 + ABZR87_RS02430 0.44 +0.5
520,108 + ABZR87_RS02430 0.44 -0.4
520,109 - ABZR87_RS02430 0.44 +0.6
520,109 - ABZR87_RS02430 0.44 -0.3
520,177 + ABZR87_RS02430 0.48 +0.2
520,177 + ABZR87_RS02430 0.48 -0.7
520,177 + ABZR87_RS02430 0.48 +0.3
520,177 + ABZR87_RS02430 0.48 -0.2
520,178 - ABZR87_RS02430 0.48 -0.7
520,178 - ABZR87_RS02430 0.48 +0.7
520,178 - ABZR87_RS02430 0.48 +0.3
520,178 - ABZR87_RS02430 0.48 -0.4
520,178 - ABZR87_RS02430 0.48 +0.1
520,178 - ABZR87_RS02430 0.48 +1.0
520,178 - ABZR87_RS02430 0.48 -1.0
520,489 + ABZR87_RS02430 0.65 +0.7
520,489 + ABZR87_RS02430 0.65 +0.6
520,489 + ABZR87_RS02430 0.65 +0.2
520,489 + ABZR87_RS02430 0.65 +0.3
520,489 + ABZR87_RS02430 0.65 -0.6
520,490 - ABZR87_RS02430 0.65 -2.3
520,490 - ABZR87_RS02430 0.65 -0.0
520,549 + ABZR87_RS02430 0.69 -1.8
520,549 + ABZR87_RS02430 0.69 -0.8
520,744 + ABZR87_RS02430 0.79 -1.8
520,745 - ABZR87_RS02430 0.80 +1.2
520,745 - ABZR87_RS02430 0.80 +1.4
520,745 - ABZR87_RS02430 0.80 +1.2
520,745 - ABZR87_RS02430 0.80 -0.8
520,766 - ABZR87_RS02430 0.81 +0.4
520,766 - ABZR87_RS02430 0.81 +0.1
520,766 - ABZR87_RS02430 0.81 +1.1
520,889 - ABZR87_RS02430 0.87 -0.2
520,939 + -0.8
520,954 + +0.7
520,954 + +1.2
520,954 + +0.0
520,954 + -1.1
520,954 + +1.5
520,955 - -1.5
520,955 - +0.6
520,955 - +0.9
520,955 - +0.7
520,955 - -0.6
521,023 + +1.1
521,144 + +0.5
521,144 + +0.6
521,145 - +2.8
521,145 - +2.4
521,287 - ABZR87_RS02435 0.16 +1.0
521,287 - ABZR87_RS02435 0.16 -1.0
521,375 + ABZR87_RS02435 0.25 -1.8
521,376 - ABZR87_RS02435 0.25 -0.2
521,376 - ABZR87_RS02435 0.25 -1.7
521,573 + ABZR87_RS02435 0.43 -2.0
521,573 + ABZR87_RS02435 0.43 -1.9
521,573 + ABZR87_RS02435 0.43 +0.3
521,573 + ABZR87_RS02435 0.43 +0.2
521,573 + ABZR87_RS02435 0.43 +0.1
521,573 + ABZR87_RS02435 0.43 +1.3
521,573 + ABZR87_RS02435 0.43 -1.7
521,573 + ABZR87_RS02435 0.43 -0.7
521,573 + ABZR87_RS02435 0.43 -0.1
521,574 - ABZR87_RS02435 0.43 +0.2
521,574 - ABZR87_RS02435 0.43 -0.3
521,574 - ABZR87_RS02435 0.43 +1.9
521,576 - ABZR87_RS02435 0.43 -0.2
521,789 + ABZR87_RS02435 0.63 -0.9
521,789 + ABZR87_RS02435 0.63 +1.1
521,789 + ABZR87_RS02435 0.63 -0.0
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 -0.5
521,789 + ABZR87_RS02435 0.63 -0.0
521,789 + ABZR87_RS02435 0.63 +0.8
521,789 + ABZR87_RS02435 0.63 +0.8
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 +0.3
521,789 + ABZR87_RS02435 0.63 +0.1
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 -0.5
521,789 + ABZR87_RS02435 0.63 -0.7
521,789 + ABZR87_RS02435 0.63 +1.9
521,789 + ABZR87_RS02435 0.63 +1.2
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 -0.3
521,789 + ABZR87_RS02435 0.63 +2.8
521,789 + ABZR87_RS02435 0.63 +0.2
521,789 + ABZR87_RS02435 0.63 +0.8
521,789 + ABZR87_RS02435 0.63 +0.8
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 +0.2
521,789 + ABZR87_RS02435 0.63 +0.4
521,789 + ABZR87_RS02435 0.63 +0.9
521,789 + ABZR87_RS02435 0.63 -0.5
521,789 + ABZR87_RS02435 0.63 -0.8
521,789 + ABZR87_RS02435 0.63 +0.1
521,789 + ABZR87_RS02435 0.63 +0.5
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 +0.4
521,790 - ABZR87_RS02435 0.63 -1.0
521,790 - ABZR87_RS02435 0.63 -0.5
521,790 - ABZR87_RS02435 0.63 +0.1
521,790 - ABZR87_RS02435 0.63 +2.3
521,790 - ABZR87_RS02435 0.63 -0.8
521,790 - ABZR87_RS02435 0.63 +0.1
521,790 - ABZR87_RS02435 0.63 +1.1
521,790 - ABZR87_RS02435 0.63 -0.4
521,790 - ABZR87_RS02435 0.63 -0.0
521,790 - ABZR87_RS02435 0.63 -0.2
521,790 - ABZR87_RS02435 0.63 -0.2
521,790 - ABZR87_RS02435 0.63 +0.4
521,790 - ABZR87_RS02435 0.63 +0.1
521,790 - ABZR87_RS02435 0.63 +1.3
521,790 - ABZR87_RS02435 0.63 -0.9
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 +0.3
521,790 - ABZR87_RS02435 0.63 +0.7
521,790 - ABZR87_RS02435 0.63 -0.6
521,790 - ABZR87_RS02435 0.63 +1.5
521,790 - ABZR87_RS02435 0.63 -0.7
521,790 - ABZR87_RS02435 0.63 -0.0
521,790 - ABZR87_RS02435 0.63 +0.3
521,790 - ABZR87_RS02435 0.63 +0.2
521,790 - ABZR87_RS02435 0.63 +0.9
521,790 - ABZR87_RS02435 0.63 +0.9
521,790 - ABZR87_RS02435 0.63 +1.2
521,790 - ABZR87_RS02435 0.63 -0.5
521,790 - ABZR87_RS02435 0.63 -1.1
521,790 - ABZR87_RS02435 0.63 +0.9
522,041 + ABZR87_RS02435 0.86 +0.0
522,041 + ABZR87_RS02435 0.86 -0.7
522,041 + ABZR87_RS02435 0.86 -0.2
522,041 + ABZR87_RS02435 0.86 +0.0
522,042 - ABZR87_RS02435 0.86 -2.3
522,042 - ABZR87_RS02435 0.86 -0.4
522,042 - ABZR87_RS02435 0.86 +0.8
522,042 - ABZR87_RS02435 0.86 -0.2
522,042 - ABZR87_RS02435 0.86 -0.5
522,146 + +3.4
522,146 + +0.2
522,147 - +0.7
522,147 - +1.2
522,147 - -1.3
522,183 - -0.9
522,369 + ABZR87_RS02440 0.11 -0.7
522,369 + ABZR87_RS02440 0.11 +1.8
522,369 + ABZR87_RS02440 0.11 -1.2
522,369 + ABZR87_RS02440 0.11 -1.6
522,370 - ABZR87_RS02440 0.11 -1.3
522,370 - ABZR87_RS02440 0.11 -1.9
522,370 - ABZR87_RS02440 0.11 -0.4
522,370 - ABZR87_RS02440 0.11 -3.0
522,462 + ABZR87_RS02440 0.23 -0.9
522,462 + ABZR87_RS02440 0.23 -0.6
522,462 + ABZR87_RS02440 0.23 -1.1
522,462 + ABZR87_RS02440 0.23 +0.4
522,462 + ABZR87_RS02440 0.23 -2.2
522,463 - ABZR87_RS02440 0.23 -0.7
522,463 - ABZR87_RS02440 0.23 -0.7
522,528 - ABZR87_RS02440 0.31 -1.5
522,528 - ABZR87_RS02440 0.31 -1.6
522,528 - ABZR87_RS02440 0.31 +0.7
522,528 - ABZR87_RS02440 0.31 -0.8
522,533 + ABZR87_RS02440 0.32 -1.4
522,534 - ABZR87_RS02440 0.32 -0.3
522,534 - ABZR87_RS02440 0.32 -1.3
522,585 + ABZR87_RS02440 0.38 +1.1
522,585 + ABZR87_RS02440 0.38 -0.3
522,586 - ABZR87_RS02440 0.38 -3.3
522,586 - ABZR87_RS02440 0.38 +1.1
522,586 - ABZR87_RS02440 0.38 -1.5
522,586 - ABZR87_RS02440 0.38 -1.6
522,586 - ABZR87_RS02440 0.38 -0.2
522,586 - ABZR87_RS02440 0.38 -1.6
522,630 + ABZR87_RS02440 0.44 -4.0
522,630 + ABZR87_RS02440 0.44 -1.4
522,630 + ABZR87_RS02440 0.44 -2.2
522,631 - ABZR87_RS02440 0.44 -2.5
522,631 - ABZR87_RS02440 0.44 -2.2
522,672 + ABZR87_RS02440 0.49 -2.0
522,673 - ABZR87_RS02440 0.49 -2.1
522,673 - ABZR87_RS02440 0.49 -1.2
522,705 + ABZR87_RS02440 0.53 -0.3
522,705 + ABZR87_RS02440 0.53 -1.3
522,705 + ABZR87_RS02440 0.53 -0.8
522,705 + ABZR87_RS02440 0.53 -0.7
522,705 + ABZR87_RS02440 0.53 -1.7
522,705 + ABZR87_RS02440 0.53 -2.1
522,705 + ABZR87_RS02440 0.53 +1.1
522,705 + ABZR87_RS02440 0.53 -1.5
522,705 + ABZR87_RS02440 0.53 -0.8
522,705 + ABZR87_RS02440 0.53 +0.1
522,706 - ABZR87_RS02440 0.53 -2.4
522,706 - ABZR87_RS02440 0.53 +1.8
522,706 - ABZR87_RS02440 0.53 -0.7
522,706 - ABZR87_RS02440 0.53 -2.2
522,750 + ABZR87_RS02440 0.59 -1.2
522,750 + ABZR87_RS02440 0.59 +0.0
522,751 - ABZR87_RS02440 0.59 -0.7
522,751 - ABZR87_RS02440 0.59 -1.7
522,751 - ABZR87_RS02440 0.59 -1.1
522,783 + ABZR87_RS02440 0.63 -0.5
522,783 + ABZR87_RS02440 0.63 -1.0
522,784 - ABZR87_RS02440 0.63 -1.9
522,942 + ABZR87_RS02440 0.83 -0.7
522,942 + ABZR87_RS02440 0.83 -1.4

Or see this region's nucleotide sequence