Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02055

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02050 and ABZR87_RS02055 are separated by 148 nucleotidesABZR87_RS02055 and ABZR87_RS02060 are separated by 47 nucleotides ABZR87_RS02050: ABZR87_RS02050 - fructose-specific PTS transporter subunit EIIC, at 439,979 to 441,694 _RS02050 ABZR87_RS02055: ABZR87_RS02055 - ABC transporter substrate-binding protein, at 441,843 to 443,000 _RS02055 ABZR87_RS02060: ABZR87_RS02060 - acetylornithine deacetylase, at 443,048 to 444,250 _RS02060 Position (kb) 441 442 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 440.876 kb on + strand, within ABZR87_RS02050at 440.876 kb on + strand, within ABZR87_RS02050at 440.885 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.257 kb on + strand, within ABZR87_RS02050at 441.257 kb on + strand, within ABZR87_RS02050at 441.257 kb on + strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.293 kb on + strand, within ABZR87_RS02050at 441.293 kb on + strand, within ABZR87_RS02050at 441.293 kb on + strand, within ABZR87_RS02050at 441.294 kb on - strand, within ABZR87_RS02050at 441.294 kb on - strand, within ABZR87_RS02050at 441.455 kb on + strand, within ABZR87_RS02050at 441.455 kb on + strand, within ABZR87_RS02050at 441.612 kb on - strandat 441.612 kb on - strandat 441.803 kb on + strandat 441.803 kb on + strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.807 kb on + strandat 441.807 kb on + strandat 441.807 kb on + strandat 441.807 kb on + strandat 441.808 kb on - strandat 441.808 kb on - strandat 441.808 kb on - strandat 441.808 kb on - strandat 441.934 kb on + strandat 441.934 kb on + strandat 441.935 kb on - strandat 441.935 kb on - strandat 441.935 kb on - strandat 442.026 kb on + strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.099 kb on - strand, within ABZR87_RS02055at 442.124 kb on + strand, within ABZR87_RS02055at 442.125 kb on - strand, within ABZR87_RS02055at 442.125 kb on - strand, within ABZR87_RS02055at 442.170 kb on + strand, within ABZR87_RS02055at 442.170 kb on + strand, within ABZR87_RS02055at 442.171 kb on - strand, within ABZR87_RS02055at 442.305 kb on + strand, within ABZR87_RS02055at 442.305 kb on + strand, within ABZR87_RS02055at 442.374 kb on + strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.390 kb on - strand, within ABZR87_RS02055at 442.557 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.656 kb on - strand, within ABZR87_RS02055at 442.656 kb on - strand, within ABZR87_RS02055at 442.705 kb on - strand, within ABZR87_RS02055at 442.710 kb on + strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.713 kb on - strand, within ABZR87_RS02055at 442.740 kb on + strand, within ABZR87_RS02055at 442.741 kb on - strand, within ABZR87_RS02055at 442.741 kb on - strand, within ABZR87_RS02055at 442.770 kb on - strand, within ABZR87_RS02055at 442.782 kb on + strand, within ABZR87_RS02055at 442.782 kb on + strand, within ABZR87_RS02055at 442.800 kb on + strand, within ABZR87_RS02055at 442.800 kb on + strand, within ABZR87_RS02055at 442.801 kb on - strand, within ABZR87_RS02055at 442.801 kb on - strand, within ABZR87_RS02055at 442.896 kb on + strandat 442.896 kb on + strandat 442.896 kb on + strandat 442.896 kb on + strandat 442.897 kb on - strandat 442.897 kb on - strandat 443.130 kb on + strandat 443.131 kb on - strandat 443.131 kb on - strandat 443.131 kb on - strandat 443.223 kb on + strand, within ABZR87_RS02060at 443.223 kb on + strand, within ABZR87_RS02060at 443.224 kb on - strand, within ABZR87_RS02060at 443.314 kb on + strand, within ABZR87_RS02060at 443.314 kb on + strand, within ABZR87_RS02060at 443.314 kb on + strand, within ABZR87_RS02060at 443.315 kb on - strand, within ABZR87_RS02060at 443.391 kb on + strand, within ABZR87_RS02060at 443.391 kb on + strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.492 kb on - strand, within ABZR87_RS02060at 443.590 kb on + strand, within ABZR87_RS02060at 443.590 kb on + strand, within ABZR87_RS02060at 443.590 kb on + strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.683 kb on - strand, within ABZR87_RS02060at 443.683 kb on - strand, within ABZR87_RS02060at 443.820 kb on + strand, within ABZR87_RS02060at 443.820 kb on + strand, within ABZR87_RS02060at 443.821 kb on - strand, within ABZR87_RS02060at 443.821 kb on - strand, within ABZR87_RS02060at 443.821 kb on - strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.875 kb on + strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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440,876 + ABZR87_RS02050 0.52 -0.8
440,876 + ABZR87_RS02050 0.52 -0.2
440,885 + ABZR87_RS02050 0.53 -0.3
441,110 + ABZR87_RS02050 0.66 -2.0
441,110 + ABZR87_RS02050 0.66 -0.1
441,110 + ABZR87_RS02050 0.66 -0.1
441,110 + ABZR87_RS02050 0.66 +1.0
441,110 + ABZR87_RS02050 0.66 -0.6
441,110 + ABZR87_RS02050 0.66 -0.3
441,110 + ABZR87_RS02050 0.66 +0.2
441,110 + ABZR87_RS02050 0.66 +0.4
441,110 + ABZR87_RS02050 0.66 +0.5
441,110 + ABZR87_RS02050 0.66 +0.4
441,110 + ABZR87_RS02050 0.66 -1.3
441,111 - ABZR87_RS02050 0.66 +0.8
441,111 - ABZR87_RS02050 0.66 +0.9
441,111 - ABZR87_RS02050 0.66 -0.0
441,111 - ABZR87_RS02050 0.66 +3.4
441,111 - ABZR87_RS02050 0.66 +1.3
441,111 - ABZR87_RS02050 0.66 -0.2
441,111 - ABZR87_RS02050 0.66 +0.6
441,111 - ABZR87_RS02050 0.66 -1.1
441,111 - ABZR87_RS02050 0.66 +0.9
441,111 - ABZR87_RS02050 0.66 +1.9
441,257 + ABZR87_RS02050 0.74 -0.2
441,257 + ABZR87_RS02050 0.74 -2.1
441,257 + ABZR87_RS02050 0.74 +0.6
441,258 - ABZR87_RS02050 0.75 -0.9
441,258 - ABZR87_RS02050 0.75 +0.3
441,258 - ABZR87_RS02050 0.75 +1.5
441,258 - ABZR87_RS02050 0.75 +0.5
441,293 + ABZR87_RS02050 0.77 +0.7
441,293 + ABZR87_RS02050 0.77 -0.0
441,293 + ABZR87_RS02050 0.77 +0.8
441,294 - ABZR87_RS02050 0.77 +0.5
441,294 - ABZR87_RS02050 0.77 +0.7
441,455 + ABZR87_RS02050 0.86 +1.1
441,455 + ABZR87_RS02050 0.86 +1.4
441,612 - +2.4
441,612 - +0.2
441,803 + -0.1
441,803 + +2.4
441,804 - +0.0
441,804 - -0.6
441,804 - +1.5
441,804 - -0.5
441,804 - +0.5
441,807 + +0.6
441,807 + +0.9
441,807 + -1.7
441,807 + -0.4
441,808 - -0.6
441,808 - +0.5
441,808 - -1.1
441,808 - +0.1
441,934 + -0.1
441,934 + +0.4
441,935 - -0.6
441,935 - +0.6
441,935 - -2.2
442,026 + ABZR87_RS02055 0.16 -0.6
442,027 - ABZR87_RS02055 0.16 -1.1
442,027 - ABZR87_RS02055 0.16 +0.7
442,027 - ABZR87_RS02055 0.16 +0.6
442,027 - ABZR87_RS02055 0.16 -1.4
442,099 - ABZR87_RS02055 0.22 +3.0
442,124 + ABZR87_RS02055 0.24 +0.1
442,125 - ABZR87_RS02055 0.24 +2.4
442,125 - ABZR87_RS02055 0.24 -1.2
442,170 + ABZR87_RS02055 0.28 +0.6
442,170 + ABZR87_RS02055 0.28 -1.3
442,171 - ABZR87_RS02055 0.28 +0.3
442,305 + ABZR87_RS02055 0.40 +3.6
442,305 + ABZR87_RS02055 0.40 +0.5
442,374 + ABZR87_RS02055 0.46 +0.9
442,375 - ABZR87_RS02055 0.46 -0.7
442,375 - ABZR87_RS02055 0.46 +0.4
442,375 - ABZR87_RS02055 0.46 +0.8
442,375 - ABZR87_RS02055 0.46 -1.1
442,390 - ABZR87_RS02055 0.47 +0.2
442,557 + ABZR87_RS02055 0.62 -1.1
442,617 + ABZR87_RS02055 0.67 -0.0
442,617 + ABZR87_RS02055 0.67 +0.2
442,617 + ABZR87_RS02055 0.67 -1.0
442,618 - ABZR87_RS02055 0.67 -3.1
442,618 - ABZR87_RS02055 0.67 +0.6
442,618 - ABZR87_RS02055 0.67 +0.1
442,618 - ABZR87_RS02055 0.67 -0.1
442,618 - ABZR87_RS02055 0.67 -0.9
442,624 + ABZR87_RS02055 0.67 -1.2
442,624 + ABZR87_RS02055 0.67 +4.8
442,624 + ABZR87_RS02055 0.67 -1.9
442,625 - ABZR87_RS02055 0.68 -0.9
442,625 - ABZR87_RS02055 0.68 +5.1
442,625 - ABZR87_RS02055 0.68 -0.6
442,625 - ABZR87_RS02055 0.68 -2.5
442,625 - ABZR87_RS02055 0.68 -0.8
442,625 - ABZR87_RS02055 0.68 +1.4
442,655 + ABZR87_RS02055 0.70 -0.5
442,655 + ABZR87_RS02055 0.70 -2.2
442,655 + ABZR87_RS02055 0.70 -2.2
442,656 - ABZR87_RS02055 0.70 +1.1
442,656 - ABZR87_RS02055 0.70 +2.1
442,705 - ABZR87_RS02055 0.74 +0.7
442,710 + ABZR87_RS02055 0.75 +1.2
442,711 - ABZR87_RS02055 0.75 +0.5
442,711 - ABZR87_RS02055 0.75 -0.1
442,711 - ABZR87_RS02055 0.75 +0.7
442,711 - ABZR87_RS02055 0.75 +0.7
442,711 - ABZR87_RS02055 0.75 +0.0
442,713 - ABZR87_RS02055 0.75 -0.3
442,740 + ABZR87_RS02055 0.77 -0.2
442,741 - ABZR87_RS02055 0.78 +0.9
442,741 - ABZR87_RS02055 0.78 +1.7
442,770 - ABZR87_RS02055 0.80 -2.6
442,782 + ABZR87_RS02055 0.81 +0.3
442,782 + ABZR87_RS02055 0.81 -0.5
442,800 + ABZR87_RS02055 0.83 +1.2
442,800 + ABZR87_RS02055 0.83 -0.5
442,801 - ABZR87_RS02055 0.83 -0.6
442,801 - ABZR87_RS02055 0.83 -0.2
442,896 + -0.2
442,896 + -1.4
442,896 + +0.1
442,896 + +0.4
442,897 - +1.3
442,897 - +0.6
443,130 + -0.6
443,131 - -0.4
443,131 - -0.7
443,131 - -0.9
443,223 + ABZR87_RS02060 0.15 +0.2
443,223 + ABZR87_RS02060 0.15 +0.0
443,224 - ABZR87_RS02060 0.15 -0.7
443,314 + ABZR87_RS02060 0.22 +1.9
443,314 + ABZR87_RS02060 0.22 +1.2
443,314 + ABZR87_RS02060 0.22 +1.0
443,315 - ABZR87_RS02060 0.22 +0.4
443,391 + ABZR87_RS02060 0.29 -0.7
443,391 + ABZR87_RS02060 0.29 -0.0
443,392 - ABZR87_RS02060 0.29 +0.5
443,392 - ABZR87_RS02060 0.29 -0.1
443,392 - ABZR87_RS02060 0.29 +1.8
443,392 - ABZR87_RS02060 0.29 +1.3
443,492 - ABZR87_RS02060 0.37 +1.0
443,590 + ABZR87_RS02060 0.45 -1.9
443,590 + ABZR87_RS02060 0.45 +0.4
443,590 + ABZR87_RS02060 0.45 -0.3
443,591 - ABZR87_RS02060 0.45 +1.0
443,591 - ABZR87_RS02060 0.45 +1.7
443,591 - ABZR87_RS02060 0.45 -0.1
443,591 - ABZR87_RS02060 0.45 +1.1
443,683 - ABZR87_RS02060 0.53 -1.8
443,683 - ABZR87_RS02060 0.53 +1.2
443,820 + ABZR87_RS02060 0.64 -0.2
443,820 + ABZR87_RS02060 0.64 -0.1
443,821 - ABZR87_RS02060 0.64 -0.2
443,821 - ABZR87_RS02060 0.64 -0.2
443,821 - ABZR87_RS02060 0.64 -1.1
443,831 + ABZR87_RS02060 0.65 +0.5
443,831 + ABZR87_RS02060 0.65 +2.4
443,831 + ABZR87_RS02060 0.65 -1.1
443,831 + ABZR87_RS02060 0.65 +2.1
443,831 + ABZR87_RS02060 0.65 -1.6
443,831 + ABZR87_RS02060 0.65 +1.8
443,831 + ABZR87_RS02060 0.65 +5.1
443,831 + ABZR87_RS02060 0.65 -0.5
443,831 + ABZR87_RS02060 0.65 -0.8
443,832 - ABZR87_RS02060 0.65 -1.7
443,832 - ABZR87_RS02060 0.65 +0.7
443,832 - ABZR87_RS02060 0.65 +0.2
443,832 - ABZR87_RS02060 0.65 -0.4
443,832 - ABZR87_RS02060 0.65 +0.1
443,875 + ABZR87_RS02060 0.69 -0.1
443,876 - ABZR87_RS02060 0.69 +0.4
443,876 - ABZR87_RS02060 0.69 +1.0
443,876 - ABZR87_RS02060 0.69 -1.3
443,876 - ABZR87_RS02060 0.69 +1.1
443,876 - ABZR87_RS02060 0.69 +0.5

Or see this region's nucleotide sequence