Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00600 and ABZR87_RS00605 are separated by 408 nucleotides ABZR87_RS00605 and ABZR87_RS00610 are separated by 272 nucleotides ABZR87_RS00610 and ABZR87_RS00615 overlap by 19 nucleotides
ABZR87_RS00600: ABZR87_RS00600 - hypothetical protein, at 123,936 to 124,742
_RS00600
ABZR87_RS00605: ABZR87_RS00605 - hypothetical protein, at 125,151 to 125,423
_RS00605
ABZR87_RS00610: ABZR87_RS00610 - HD-GYP domain-containing protein, at 125,696 to 126,904
_RS00610
ABZR87_RS00615: ABZR87_RS00615 - glycine betaine ABC transporter substrate-binding protein, at 126,886 to 128,442
_RS00615
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 124.816 kb on - strand at 124.816 kb on - strand at 124.861 kb on + strand at 124.861 kb on + strand at 124.892 kb on + strand at 124.933 kb on - strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 125.040 kb on + strand at 125.041 kb on - strand at 125.041 kb on - strand at 125.041 kb on - strand at 125.054 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.073 kb on - strand at 125.073 kb on - strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.079 kb on - strand at 125.079 kb on - strand at 125.079 kb on - strand at 125.079 kb on - strand at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.239 kb on - strand, within ABZR87_RS00605 at 125.239 kb on - strand, within ABZR87_RS00605 at 125.274 kb on + strand, within ABZR87_RS00605 at 125.275 kb on - strand, within ABZR87_RS00605 at 125.275 kb on - strand, within ABZR87_RS00605 at 125.304 kb on + strand, within ABZR87_RS00605 at 125.304 kb on + strand, within ABZR87_RS00605 at 125.304 kb on + strand, within ABZR87_RS00605 at 125.305 kb on - strand, within ABZR87_RS00605 at 125.337 kb on + strand, within ABZR87_RS00605 at 125.337 kb on + strand, within ABZR87_RS00605 at 125.338 kb on - strand, within ABZR87_RS00605 at 125.357 kb on + strand, within ABZR87_RS00605 at 125.358 kb on - strand, within ABZR87_RS00605 at 125.370 kb on + strand, within ABZR87_RS00605 at 125.371 kb on - strand, within ABZR87_RS00605 at 125.371 kb on - strand, within ABZR87_RS00605 at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.422 kb on - strand at 125.422 kb on - strand at 125.422 kb on - strand at 125.422 kb on - strand at 125.443 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.504 kb on + strand at 125.540 kb on + strand at 125.540 kb on + strand at 125.540 kb on + strand at 125.541 kb on - strand at 125.606 kb on + strand at 125.607 kb on - strand at 125.659 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.531 kb on + strand, within ABZR87_RS00610 at 126.531 kb on + strand, within ABZR87_RS00610 at 126.531 kb on + strand, within ABZR87_RS00610 at 126.531 kb on + strand, within ABZR87_RS00610 at 126.531 kb on + strand, within ABZR87_RS00610 at 126.532 kb on - strand, within ABZR87_RS00610 at 126.532 kb on - strand, within ABZR87_RS00610 at 126.533 kb on + strand, within ABZR87_RS00610 at 126.533 kb on + strand, within ABZR87_RS00610 at 126.533 kb on + strand, within ABZR87_RS00610 at 126.534 kb on - strand, within ABZR87_RS00610 at 126.560 kb on + strand, within ABZR87_RS00610 at 126.560 kb on + strand, within ABZR87_RS00610 at 126.560 kb on + strand, within ABZR87_RS00610 at 126.560 kb on + strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.561 kb on - strand, within ABZR87_RS00610 at 126.585 kb on - strand, within ABZR87_RS00610 at 126.660 kb on + strand, within ABZR87_RS00610 at 126.661 kb on - strand, within ABZR87_RS00610 at 126.661 kb on - strand, within ABZR87_RS00610 at 126.661 kb on - strand, within ABZR87_RS00610 at 126.661 kb on - strand, within ABZR87_RS00610 at 126.668 kb on + strand, within ABZR87_RS00610 at 126.668 kb on + strand, within ABZR87_RS00610 at 126.668 kb on + strand, within ABZR87_RS00610 at 126.669 kb on - strand, within ABZR87_RS00610 at 126.669 kb on - strand, within ABZR87_RS00610 at 126.763 kb on - strand, within ABZR87_RS00610 at 126.763 kb on - strand, within ABZR87_RS00610 at 126.763 kb on - strand, within ABZR87_RS00610 at 126.821 kb on - strand at 126.892 kb on - strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.024 kb on + strand at 127.025 kb on - strand at 127.025 kb on - strand at 127.082 kb on + strand, within ABZR87_RS00615 at 127.083 kb on - strand, within ABZR87_RS00615 at 127.083 kb on - strand, within ABZR87_RS00615 at 127.083 kb on - strand, within ABZR87_RS00615 at 127.153 kb on + strand, within ABZR87_RS00615 at 127.300 kb on + strand, within ABZR87_RS00615 at 127.300 kb on + strand, within ABZR87_RS00615 at 127.300 kb on + strand, within ABZR87_RS00615 at 127.300 kb on + strand, within ABZR87_RS00615 at 127.301 kb on - strand, within ABZR87_RS00615 at 127.301 kb on - strand, within ABZR87_RS00615 at 127.353 kb on - strand, within ABZR87_RS00615 at 127.444 kb on + strand, within ABZR87_RS00615 at 127.444 kb on + strand, within ABZR87_RS00615 at 127.444 kb on + strand, within ABZR87_RS00615 at 127.445 kb on - strand, within ABZR87_RS00615 at 127.445 kb on - strand, within ABZR87_RS00615 at 127.489 kb on + strand, within ABZR87_RS00615 at 127.531 kb on + strand, within ABZR87_RS00615 at 127.532 kb on - strand, within ABZR87_RS00615 at 127.532 kb on - strand, within ABZR87_RS00615 at 127.532 kb on - strand, within ABZR87_RS00615 at 127.622 kb on - strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.849 kb on - strand, within ABZR87_RS00615 at 127.849 kb on - strand, within ABZR87_RS00615 at 127.875 kb on + strand, within ABZR87_RS00615 at 127.876 kb on - strand, within ABZR87_RS00615
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 124,816 - +0.6 124,816 - +0.6 124,861 + -0.4 124,861 + -2.8 124,892 + -2.0 124,933 - -0.7 124,977 + +0.1 124,977 + -0.7 124,977 + +0.7 124,977 + +0.9 124,977 + +0.7 124,978 - +0.9 124,978 - +1.6 124,978 - +0.1 124,978 - +0.4 124,978 - -0.8 124,978 - -0.7 124,978 - +0.6 124,978 - -0.8 125,040 + -1.3 125,041 - -0.1 125,041 - -0.3 125,041 - -1.5 125,054 + -0.5 125,072 + +1.1 125,072 + +0.7 125,072 + -0.2 125,072 + +0.5 125,072 + -1.6 125,073 - -0.4 125,073 - +0.6 125,078 + +1.1 125,078 + -0.6 125,078 + +0.9 125,078 + +0.1 125,078 + +1.1 125,078 + -1.3 125,079 - +2.2 125,079 - -1.0 125,079 - -0.4 125,079 - -2.0 125,238 + ABZR87_RS00605 0.32 -0.4 125,238 + ABZR87_RS00605 0.32 +5.7 125,238 + ABZR87_RS00605 0.32 -0.5 125,238 + ABZR87_RS00605 0.32 +2.5 125,238 + ABZR87_RS00605 0.32 -2.7 125,238 + ABZR87_RS00605 0.32 +0.2 125,238 + ABZR87_RS00605 0.32 +7.8 125,238 + ABZR87_RS00605 0.32 +0.1 125,239 - ABZR87_RS00605 0.32 +0.4 125,239 - ABZR87_RS00605 0.32 -1.0 125,274 + ABZR87_RS00605 0.45 +0.6 125,275 - ABZR87_RS00605 0.45 -1.3 125,275 - ABZR87_RS00605 0.45 -0.9 125,304 + ABZR87_RS00605 0.56 +0.9 125,304 + ABZR87_RS00605 0.56 -0.3 125,304 + ABZR87_RS00605 0.56 -0.6 125,305 - ABZR87_RS00605 0.56 +0.7 125,337 + ABZR87_RS00605 0.68 +0.8 125,337 + ABZR87_RS00605 0.68 -0.5 125,338 - ABZR87_RS00605 0.68 +0.5 125,357 + ABZR87_RS00605 0.75 -0.7 125,358 - ABZR87_RS00605 0.76 +2.4 125,370 + ABZR87_RS00605 0.80 +0.5 125,371 - ABZR87_RS00605 0.81 +0.1 125,371 - ABZR87_RS00605 0.81 -0.4 125,421 + +0.2 125,421 + -0.3 125,421 + -1.4 125,421 + +0.4 125,421 + -0.5 125,421 + +0.5 125,421 + +0.4 125,421 + -0.2 125,421 + +0.4 125,422 - -0.3 125,422 - -0.0 125,422 - -0.4 125,422 - +0.6 125,443 + -0.5 125,453 + -0.2 125,453 + -2.5 125,453 + -0.2 125,453 + -0.3 125,454 - +1.1 125,454 - -0.4 125,454 - +0.5 125,454 - -1.6 125,454 - -0.4 125,454 - +1.1 125,454 - -0.6 125,504 + +0.5 125,540 + -0.3 125,540 + +0.3 125,540 + +0.1 125,541 - +0.0 125,606 + -0.8 125,607 - -0.3 125,659 + +0.6 125,738 + +1.0 125,738 + -0.4 125,738 + -0.2 125,738 + -0.8 125,738 + -0.4 125,739 - -0.4 125,739 - +0.3 125,739 - -0.1 125,739 - -0.4 125,739 - -0.4 125,739 - -0.4 125,739 - -0.8 126,172 + ABZR87_RS00610 0.39 +1.1 126,172 + ABZR87_RS00610 0.39 -0.8 126,172 + ABZR87_RS00610 0.39 -2.4 126,172 + ABZR87_RS00610 0.39 -1.3 126,172 + ABZR87_RS00610 0.39 -1.3 126,172 + ABZR87_RS00610 0.39 -1.1 126,172 + ABZR87_RS00610 0.39 -0.9 126,172 + ABZR87_RS00610 0.39 -1.1 126,173 - ABZR87_RS00610 0.39 +0.6 126,173 - ABZR87_RS00610 0.39 +0.4 126,173 - ABZR87_RS00610 0.39 -1.0 126,173 - ABZR87_RS00610 0.39 -1.0 126,173 - ABZR87_RS00610 0.39 -0.3 126,173 - ABZR87_RS00610 0.39 -0.3 126,173 - ABZR87_RS00610 0.39 -0.2 126,173 - ABZR87_RS00610 0.39 +0.9 126,173 - ABZR87_RS00610 0.39 -0.1 126,173 - ABZR87_RS00610 0.39 +0.6 126,173 - ABZR87_RS00610 0.39 -0.7 126,173 - ABZR87_RS00610 0.39 -0.3 126,531 + ABZR87_RS00610 0.69 -0.1 126,531 + ABZR87_RS00610 0.69 +0.1 126,531 + ABZR87_RS00610 0.69 +0.3 126,531 + ABZR87_RS00610 0.69 +1.8 126,531 + ABZR87_RS00610 0.69 -0.8 126,532 - ABZR87_RS00610 0.69 -0.0 126,532 - ABZR87_RS00610 0.69 -0.7 126,533 + ABZR87_RS00610 0.69 +0.3 126,533 + ABZR87_RS00610 0.69 +0.3 126,533 + ABZR87_RS00610 0.69 -0.1 126,534 - ABZR87_RS00610 0.69 +0.8 126,560 + ABZR87_RS00610 0.71 -0.3 126,560 + ABZR87_RS00610 0.71 +1.2 126,560 + ABZR87_RS00610 0.71 +0.6 126,560 + ABZR87_RS00610 0.71 +0.8 126,561 - ABZR87_RS00610 0.72 +0.2 126,561 - ABZR87_RS00610 0.72 +0.5 126,561 - ABZR87_RS00610 0.72 -0.3 126,561 - ABZR87_RS00610 0.72 +5.5 126,561 - ABZR87_RS00610 0.72 +3.4 126,561 - ABZR87_RS00610 0.72 -2.8 126,561 - ABZR87_RS00610 0.72 -0.4 126,561 - ABZR87_RS00610 0.72 +0.8 126,585 - ABZR87_RS00610 0.74 -1.7 126,660 + ABZR87_RS00610 0.80 -0.3 126,661 - ABZR87_RS00610 0.80 -1.5 126,661 - ABZR87_RS00610 0.80 -0.4 126,661 - ABZR87_RS00610 0.80 -0.3 126,661 - ABZR87_RS00610 0.80 -1.9 126,668 + ABZR87_RS00610 0.80 -0.3 126,668 + ABZR87_RS00610 0.80 +1.4 126,668 + ABZR87_RS00610 0.80 +0.6 126,669 - ABZR87_RS00610 0.80 +0.7 126,669 - ABZR87_RS00610 0.80 +0.6 126,763 - ABZR87_RS00610 0.88 +0.9 126,763 - ABZR87_RS00610 0.88 +0.1 126,763 - ABZR87_RS00610 0.88 -1.0 126,821 - +0.3 126,892 - -0.2 127,024 + +0.0 127,024 + -2.6 127,024 + +1.9 127,024 + +0.8 127,024 + +0.1 127,024 + -1.9 127,024 + +0.2 127,024 + -1.2 127,025 - +0.7 127,025 - -0.9 127,082 + ABZR87_RS00615 0.13 -0.6 127,083 - ABZR87_RS00615 0.13 -0.4 127,083 - ABZR87_RS00615 0.13 +0.6 127,083 - ABZR87_RS00615 0.13 -0.7 127,153 + ABZR87_RS00615 0.17 +2.4 127,300 + ABZR87_RS00615 0.27 -0.3 127,300 + ABZR87_RS00615 0.27 -0.2 127,300 + ABZR87_RS00615 0.27 -0.6 127,300 + ABZR87_RS00615 0.27 +0.1 127,301 - ABZR87_RS00615 0.27 -1.4 127,301 - ABZR87_RS00615 0.27 -0.7 127,353 - ABZR87_RS00615 0.30 -0.1 127,444 + ABZR87_RS00615 0.36 +0.8 127,444 + ABZR87_RS00615 0.36 -0.9 127,444 + ABZR87_RS00615 0.36 -1.9 127,445 - ABZR87_RS00615 0.36 -0.1 127,445 - ABZR87_RS00615 0.36 -0.1 127,489 + ABZR87_RS00615 0.39 +0.3 127,531 + ABZR87_RS00615 0.41 +0.5 127,532 - ABZR87_RS00615 0.41 -2.4 127,532 - ABZR87_RS00615 0.41 -0.6 127,532 - ABZR87_RS00615 0.41 -0.4 127,622 - ABZR87_RS00615 0.47 -1.0 127,848 + ABZR87_RS00615 0.62 -1.1 127,848 + ABZR87_RS00615 0.62 +1.0 127,848 + ABZR87_RS00615 0.62 -0.3 127,848 + ABZR87_RS00615 0.62 +0.2 127,849 - ABZR87_RS00615 0.62 -0.2 127,849 - ABZR87_RS00615 0.62 -0.3 127,875 + ABZR87_RS00615 0.64 +1.3 127,876 - ABZR87_RS00615 0.64 +1.4
Or see this region's nucleotide sequence