Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5036

Experiment: Nickel (II) chloride 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5034 and Pf6N2E2_5035 are separated by 42 nucleotidesPf6N2E2_5035 and Pf6N2E2_5036 are separated by 184 nucleotidesPf6N2E2_5036 and Pf6N2E2_5037 are separated by 28 nucleotidesPf6N2E2_5037 and Pf6N2E2_5038 are separated by 95 nucleotides Pf6N2E2_5034 - hypothetical protein, at 5,810,575 to 5,811,198 _5034 Pf6N2E2_5035 - FIG00954854: hypothetical protein, at 5,811,241 to 5,811,735 _5035 Pf6N2E2_5036 - Cobalt-zinc-cadmium resistance protein, at 5,811,920 to 5,812,813 _5036 Pf6N2E2_5037 - Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase), at 5,812,842 to 5,813,261 _5037 Pf6N2E2_5038 - ATP-dependent helicase HrpB, at 5,813,357 to 5,815,873 _5038 Position (kb) 5811 5812 5813Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 5810.953 kb on + strand, within Pf6N2E2_5034at 5810.953 kb on + strand, within Pf6N2E2_5034at 5810.954 kb on - strand, within Pf6N2E2_5034at 5810.971 kb on + strand, within Pf6N2E2_5034at 5810.971 kb on + strand, within Pf6N2E2_5034at 5810.971 kb on + strand, within Pf6N2E2_5034at 5811.031 kb on - strand, within Pf6N2E2_5034at 5811.041 kb on + strand, within Pf6N2E2_5034at 5811.092 kb on - strand, within Pf6N2E2_5034at 5811.238 kb on + strandat 5811.239 kb on - strandat 5811.276 kb on - strandat 5811.281 kb on - strandat 5811.295 kb on + strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.296 kb on - strand, within Pf6N2E2_5035at 5811.301 kb on + strand, within Pf6N2E2_5035at 5811.302 kb on - strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.340 kb on + strand, within Pf6N2E2_5035at 5811.341 kb on - strand, within Pf6N2E2_5035at 5811.391 kb on + strand, within Pf6N2E2_5035at 5811.445 kb on + strand, within Pf6N2E2_5035at 5811.446 kb on - strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.448 kb on + strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.449 kb on - strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.454 kb on + strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.455 kb on - strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.475 kb on + strand, within Pf6N2E2_5035at 5811.476 kb on - strand, within Pf6N2E2_5035at 5811.476 kb on - strand, within Pf6N2E2_5035at 5811.476 kb on - strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.643 kb on + strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.644 kb on - strand, within Pf6N2E2_5035at 5811.650 kb on - strand, within Pf6N2E2_5035at 5811.679 kb on + strand, within Pf6N2E2_5035at 5811.730 kb on + strandat 5811.730 kb on + strandat 5811.730 kb on + strandat 5811.731 kb on - strandat 5811.731 kb on - strandat 5811.731 kb on - strandat 5811.890 kb on - strandat 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.242 kb on + strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.243 kb on - strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.442 kb on + strand, within Pf6N2E2_5036at 5812.443 kb on - strand, within Pf6N2E2_5036at 5812.523 kb on + strand, within Pf6N2E2_5036at 5812.623 kb on + strand, within Pf6N2E2_5036at 5812.623 kb on + strand, within Pf6N2E2_5036at 5812.834 kb on - strandat 5813.048 kb on - strand, within Pf6N2E2_5037at 5813.048 kb on - strand, within Pf6N2E2_5037at 5813.101 kb on + strand, within Pf6N2E2_5037at 5813.101 kb on + strand, within Pf6N2E2_5037at 5813.101 kb on + strand, within Pf6N2E2_5037at 5813.101 kb on + strand, within Pf6N2E2_5037at 5813.102 kb on - strand, within Pf6N2E2_5037at 5813.102 kb on - strand, within Pf6N2E2_5037at 5813.102 kb on - strand, within Pf6N2E2_5037at 5813.179 kb on + strand, within Pf6N2E2_5037at 5813.180 kb on - strand, within Pf6N2E2_5037at 5813.255 kb on + strandat 5813.256 kb on - strandat 5813.261 kb on + strandat 5813.261 kb on + strandat 5813.261 kb on + strandat 5813.262 kb on - strandat 5813.262 kb on - strandat 5813.262 kb on - strandat 5813.262 kb on - strandat 5813.262 kb on - strandat 5813.280 kb on + strandat 5813.280 kb on + strandat 5813.280 kb on + strandat 5813.280 kb on + strandat 5813.281 kb on - strandat 5813.281 kb on - strandat 5813.313 kb on + strandat 5813.314 kb on - strandat 5813.329 kb on - strandat 5813.330 kb on + strandat 5813.330 kb on + strandat 5813.386 kb on - strandat 5813.575 kb on + strandat 5813.709 kb on + strand, within Pf6N2E2_5038at 5813.710 kb on - strand, within Pf6N2E2_5038

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M
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5,810,953 + Pf6N2E2_5034 0.61 +1.0
5,810,953 + Pf6N2E2_5034 0.61 -0.2
5,810,954 - Pf6N2E2_5034 0.61 -0.8
5,810,971 + Pf6N2E2_5034 0.63 +0.1
5,810,971 + Pf6N2E2_5034 0.63 +0.7
5,810,971 + Pf6N2E2_5034 0.63 -0.0
5,811,031 - Pf6N2E2_5034 0.73 -1.1
5,811,041 + Pf6N2E2_5034 0.75 +1.3
5,811,092 - Pf6N2E2_5034 0.83 +0.9
5,811,238 + -0.2
5,811,239 - +0.2
5,811,276 - +0.3
5,811,281 - -1.8
5,811,295 + Pf6N2E2_5035 0.11 +0.4
5,811,296 - Pf6N2E2_5035 0.11 +0.2
5,811,296 - Pf6N2E2_5035 0.11 -0.9
5,811,296 - Pf6N2E2_5035 0.11 +0.3
5,811,296 - Pf6N2E2_5035 0.11 +0.2
5,811,296 - Pf6N2E2_5035 0.11 +0.3
5,811,296 - Pf6N2E2_5035 0.11 +0.6
5,811,296 - Pf6N2E2_5035 0.11 +2.8
5,811,301 + Pf6N2E2_5035 0.12 +0.1
5,811,302 - Pf6N2E2_5035 0.12 +0.2
5,811,340 + Pf6N2E2_5035 0.20 +1.0
5,811,340 + Pf6N2E2_5035 0.20 +0.6
5,811,340 + Pf6N2E2_5035 0.20 +0.6
5,811,340 + Pf6N2E2_5035 0.20 +2.3
5,811,341 - Pf6N2E2_5035 0.20 -0.5
5,811,391 + Pf6N2E2_5035 0.30 +2.8
5,811,445 + Pf6N2E2_5035 0.41 +1.2
5,811,446 - Pf6N2E2_5035 0.41 +0.2
5,811,448 + Pf6N2E2_5035 0.42 +0.5
5,811,448 + Pf6N2E2_5035 0.42 +1.7
5,811,448 + Pf6N2E2_5035 0.42 +0.6
5,811,448 + Pf6N2E2_5035 0.42 +0.5
5,811,448 + Pf6N2E2_5035 0.42 +1.9
5,811,448 + Pf6N2E2_5035 0.42 +1.3
5,811,448 + Pf6N2E2_5035 0.42 +0.1
5,811,448 + Pf6N2E2_5035 0.42 +1.2
5,811,448 + Pf6N2E2_5035 0.42 +1.1
5,811,448 + Pf6N2E2_5035 0.42 +0.6
5,811,448 + Pf6N2E2_5035 0.42 +0.0
5,811,448 + Pf6N2E2_5035 0.42 +0.8
5,811,448 + Pf6N2E2_5035 0.42 -0.2
5,811,449 - Pf6N2E2_5035 0.42 -0.5
5,811,449 - Pf6N2E2_5035 0.42 +0.7
5,811,449 - Pf6N2E2_5035 0.42 +0.8
5,811,449 - Pf6N2E2_5035 0.42 -0.7
5,811,449 - Pf6N2E2_5035 0.42 +0.9
5,811,449 - Pf6N2E2_5035 0.42 +0.8
5,811,449 - Pf6N2E2_5035 0.42 -1.1
5,811,449 - Pf6N2E2_5035 0.42 -1.7
5,811,449 - Pf6N2E2_5035 0.42 -0.6
5,811,449 - Pf6N2E2_5035 0.42 -0.6
5,811,449 - Pf6N2E2_5035 0.42 +0.3
5,811,449 - Pf6N2E2_5035 0.42 +0.4
5,811,449 - Pf6N2E2_5035 0.42 +0.7
5,811,449 - Pf6N2E2_5035 0.42 -0.7
5,811,454 + Pf6N2E2_5035 0.43 +1.6
5,811,454 + Pf6N2E2_5035 0.43 +1.2
5,811,454 + Pf6N2E2_5035 0.43 +1.0
5,811,454 + Pf6N2E2_5035 0.43 +0.7
5,811,455 - Pf6N2E2_5035 0.43 -0.1
5,811,455 - Pf6N2E2_5035 0.43 -1.2
5,811,455 - Pf6N2E2_5035 0.43 +0.2
5,811,455 - Pf6N2E2_5035 0.43 -0.2
5,811,475 + Pf6N2E2_5035 0.47 +1.7
5,811,475 + Pf6N2E2_5035 0.47 +1.3
5,811,475 + Pf6N2E2_5035 0.47 +1.1
5,811,475 + Pf6N2E2_5035 0.47 -0.4
5,811,476 - Pf6N2E2_5035 0.47 +0.8
5,811,476 - Pf6N2E2_5035 0.47 +0.9
5,811,476 - Pf6N2E2_5035 0.47 -0.4
5,811,643 + Pf6N2E2_5035 0.81 +1.4
5,811,643 + Pf6N2E2_5035 0.81 +0.4
5,811,643 + Pf6N2E2_5035 0.81 +1.3
5,811,643 + Pf6N2E2_5035 0.81 +1.3
5,811,643 + Pf6N2E2_5035 0.81 -0.2
5,811,643 + Pf6N2E2_5035 0.81 +1.3
5,811,643 + Pf6N2E2_5035 0.81 +0.5
5,811,644 - Pf6N2E2_5035 0.81 +0.9
5,811,644 - Pf6N2E2_5035 0.81 -0.7
5,811,644 - Pf6N2E2_5035 0.81 -0.2
5,811,644 - Pf6N2E2_5035 0.81 +0.7
5,811,644 - Pf6N2E2_5035 0.81 +0.5
5,811,644 - Pf6N2E2_5035 0.81 -0.1
5,811,644 - Pf6N2E2_5035 0.81 -1.7
5,811,650 - Pf6N2E2_5035 0.83 +0.8
5,811,679 + Pf6N2E2_5035 0.88 +1.0
5,811,730 + -0.5
5,811,730 + +0.2
5,811,730 + +1.9
5,811,731 - -1.0
5,811,731 - -0.4
5,811,731 - -0.4
5,811,890 - +0.3
5,812,242 + Pf6N2E2_5036 0.36 +5.3
5,812,242 + Pf6N2E2_5036 0.36 +4.8
5,812,242 + Pf6N2E2_5036 0.36 +5.1
5,812,242 + Pf6N2E2_5036 0.36 +5.1
5,812,242 + Pf6N2E2_5036 0.36 +5.3
5,812,243 - Pf6N2E2_5036 0.36 +5.5
5,812,243 - Pf6N2E2_5036 0.36 +5.6
5,812,243 - Pf6N2E2_5036 0.36 +5.4
5,812,243 - Pf6N2E2_5036 0.36 +4.8
5,812,243 - Pf6N2E2_5036 0.36 +5.7
5,812,442 + Pf6N2E2_5036 0.58 +5.0
5,812,442 + Pf6N2E2_5036 0.58 +5.2
5,812,442 + Pf6N2E2_5036 0.58 +5.5
5,812,442 + Pf6N2E2_5036 0.58 +6.0
5,812,442 + Pf6N2E2_5036 0.58 +5.6
5,812,443 - Pf6N2E2_5036 0.59 +4.9
5,812,523 + Pf6N2E2_5036 0.67 +5.0
5,812,623 + Pf6N2E2_5036 0.79 +5.3
5,812,623 + Pf6N2E2_5036 0.79 +4.9
5,812,834 - -0.1
5,813,048 - Pf6N2E2_5037 0.49 -2.0
5,813,048 - Pf6N2E2_5037 0.49 -2.1
5,813,101 + Pf6N2E2_5037 0.62 +4.9
5,813,101 + Pf6N2E2_5037 0.62 +5.0
5,813,101 + Pf6N2E2_5037 0.62 +5.4
5,813,101 + Pf6N2E2_5037 0.62 +4.6
5,813,102 - Pf6N2E2_5037 0.62 -1.5
5,813,102 - Pf6N2E2_5037 0.62 -2.4
5,813,102 - Pf6N2E2_5037 0.62 -2.8
5,813,179 + Pf6N2E2_5037 0.80 +5.9
5,813,180 - Pf6N2E2_5037 0.80 +0.9
5,813,255 + +4.9
5,813,256 - +1.1
5,813,261 + +5.3
5,813,261 + +4.3
5,813,261 + +5.3
5,813,262 - -0.7
5,813,262 - +1.4
5,813,262 - -0.2
5,813,262 - +0.5
5,813,262 - +0.2
5,813,280 + +3.9
5,813,280 + +4.7
5,813,280 + +5.1
5,813,280 + +4.1
5,813,281 - +0.4
5,813,281 - -1.9
5,813,313 + +3.3
5,813,314 - -0.3
5,813,329 - -3.4
5,813,330 + +4.0
5,813,330 + +4.8
5,813,386 - -2.6
5,813,575 + +0.5
5,813,709 + Pf6N2E2_5038 0.14 -1.1
5,813,710 - Pf6N2E2_5038 0.14 -1.2

Or see this region's nucleotide sequence