Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4652

Experiment: Nickel (II) chloride 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4651 and Pf6N2E2_4652 are separated by 215 nucleotidesPf6N2E2_4652 and Pf6N2E2_4653 are separated by 19 nucleotides Pf6N2E2_4651 - Putative threonine efflux protein, at 5,381,090 to 5,381,710 _4651 Pf6N2E2_4652 - S-adenosylmethionine synthetase (EC 2.5.1.6), at 5,381,926 to 5,383,116 _4652 Pf6N2E2_4653 - Transcriptional regulator, ArsR family / Methyltransferase fusion, at 5,383,136 to 5,384,131 _4653 Position (kb) 5381 5382 5383 5384Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5381.342 kb on + strand, within Pf6N2E2_4651at 5381.342 kb on + strand, within Pf6N2E2_4651at 5381.343 kb on - strand, within Pf6N2E2_4651at 5381.343 kb on - strand, within Pf6N2E2_4651at 5381.343 kb on - strand, within Pf6N2E2_4651at 5381.343 kb on - strand, within Pf6N2E2_4651at 5381.343 kb on - strand, within Pf6N2E2_4651at 5381.499 kb on + strand, within Pf6N2E2_4651at 5381.499 kb on + strand, within Pf6N2E2_4651at 5381.582 kb on + strand, within Pf6N2E2_4651at 5381.582 kb on + strand, within Pf6N2E2_4651at 5381.582 kb on + strand, within Pf6N2E2_4651at 5381.582 kb on + strand, within Pf6N2E2_4651at 5381.582 kb on + strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.583 kb on - strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.588 kb on + strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.589 kb on - strand, within Pf6N2E2_4651at 5381.600 kb on + strand, within Pf6N2E2_4651at 5381.601 kb on - strand, within Pf6N2E2_4651at 5381.601 kb on - strand, within Pf6N2E2_4651at 5381.708 kb on + strandat 5381.708 kb on + strandat 5381.708 kb on + strandat 5381.708 kb on + strandat 5381.708 kb on + strandat 5381.708 kb on + strandat 5381.708 kb on + strandat 5381.709 kb on - strandat 5381.709 kb on - strandat 5381.774 kb on + strandat 5381.774 kb on + strandat 5381.774 kb on + strandat 5381.774 kb on + strandat 5381.774 kb on + strandat 5381.794 kb on + strandat 5381.794 kb on + strandat 5381.861 kb on - strandat 5381.928 kb on - strandat 5381.928 kb on - strandat 5383.203 kb on - strandat 5383.209 kb on - strandat 5383.209 kb on - strandat 5383.209 kb on - strandat 5383.213 kb on - strandat 5383.213 kb on - strandat 5383.213 kb on - strandat 5383.213 kb on - strandat 5383.213 kb on - strandat 5383.213 kb on - strandat 5383.332 kb on - strand, within Pf6N2E2_4653at 5383.332 kb on - strand, within Pf6N2E2_4653at 5383.332 kb on - strand, within Pf6N2E2_4653at 5383.332 kb on - strand, within Pf6N2E2_4653at 5383.332 kb on - strand, within Pf6N2E2_4653at 5383.332 kb on - strand, within Pf6N2E2_4653at 5383.431 kb on - strand, within Pf6N2E2_4653at 5383.431 kb on - strand, within Pf6N2E2_4653at 5383.493 kb on - strand, within Pf6N2E2_4653at 5383.650 kb on - strand, within Pf6N2E2_4653at 5383.650 kb on - strand, within Pf6N2E2_4653at 5383.650 kb on - strand, within Pf6N2E2_4653at 5383.650 kb on - strand, within Pf6N2E2_4653at 5383.650 kb on - strand, within Pf6N2E2_4653at 5383.779 kb on - strand, within Pf6N2E2_4653at 5383.779 kb on - strand, within Pf6N2E2_4653at 5383.779 kb on - strand, within Pf6N2E2_4653at 5384.040 kb on - strandat 5384.040 kb on - strandat 5384.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M
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5,381,342 + Pf6N2E2_4651 0.41 -0.7
5,381,342 + Pf6N2E2_4651 0.41 -0.9
5,381,343 - Pf6N2E2_4651 0.41 +0.4
5,381,343 - Pf6N2E2_4651 0.41 -1.0
5,381,343 - Pf6N2E2_4651 0.41 -0.2
5,381,343 - Pf6N2E2_4651 0.41 -2.1
5,381,343 - Pf6N2E2_4651 0.41 -0.7
5,381,499 + Pf6N2E2_4651 0.66 +0.1
5,381,499 + Pf6N2E2_4651 0.66 -0.0
5,381,582 + Pf6N2E2_4651 0.79 -0.1
5,381,582 + Pf6N2E2_4651 0.79 +0.6
5,381,582 + Pf6N2E2_4651 0.79 -1.0
5,381,582 + Pf6N2E2_4651 0.79 -0.3
5,381,582 + Pf6N2E2_4651 0.79 -0.5
5,381,583 - Pf6N2E2_4651 0.79 +0.4
5,381,583 - Pf6N2E2_4651 0.79 +1.9
5,381,583 - Pf6N2E2_4651 0.79 +0.6
5,381,583 - Pf6N2E2_4651 0.79 +0.4
5,381,583 - Pf6N2E2_4651 0.79 -0.2
5,381,583 - Pf6N2E2_4651 0.79 +0.3
5,381,583 - Pf6N2E2_4651 0.79 +0.7
5,381,588 + Pf6N2E2_4651 0.80 +0.9
5,381,588 + Pf6N2E2_4651 0.80 -0.4
5,381,588 + Pf6N2E2_4651 0.80 -0.9
5,381,588 + Pf6N2E2_4651 0.80 -0.2
5,381,588 + Pf6N2E2_4651 0.80 -1.3
5,381,588 + Pf6N2E2_4651 0.80 -0.0
5,381,588 + Pf6N2E2_4651 0.80 +0.2
5,381,588 + Pf6N2E2_4651 0.80 -0.1
5,381,588 + Pf6N2E2_4651 0.80 -0.3
5,381,588 + Pf6N2E2_4651 0.80 -0.6
5,381,588 + Pf6N2E2_4651 0.80 -0.6
5,381,589 - Pf6N2E2_4651 0.80 +0.2
5,381,589 - Pf6N2E2_4651 0.80 +0.5
5,381,589 - Pf6N2E2_4651 0.80 -2.4
5,381,589 - Pf6N2E2_4651 0.80 +0.2
5,381,589 - Pf6N2E2_4651 0.80 +0.1
5,381,589 - Pf6N2E2_4651 0.80 -0.8
5,381,589 - Pf6N2E2_4651 0.80 -1.0
5,381,589 - Pf6N2E2_4651 0.80 +0.3
5,381,589 - Pf6N2E2_4651 0.80 +0.6
5,381,589 - Pf6N2E2_4651 0.80 -2.4
5,381,600 + Pf6N2E2_4651 0.82 -0.8
5,381,601 - Pf6N2E2_4651 0.82 +1.0
5,381,601 - Pf6N2E2_4651 0.82 -1.9
5,381,708 + -0.6
5,381,708 + -1.8
5,381,708 + -0.9
5,381,708 + -0.0
5,381,708 + +0.8
5,381,708 + -1.1
5,381,708 + +1.3
5,381,709 - +0.4
5,381,709 - +0.1
5,381,774 + -1.3
5,381,774 + -0.8
5,381,774 + +1.0
5,381,774 + -1.3
5,381,774 + -0.5
5,381,794 + +2.9
5,381,794 + +0.4
5,381,861 - +0.6
5,381,928 - +0.9
5,381,928 - -0.5
5,383,203 - +0.1
5,383,209 - -1.5
5,383,209 - +0.9
5,383,209 - +2.0
5,383,213 - +0.4
5,383,213 - -0.1
5,383,213 - +0.3
5,383,213 - -0.7
5,383,213 - -0.1
5,383,213 - -1.6
5,383,332 - Pf6N2E2_4653 0.20 +0.3
5,383,332 - Pf6N2E2_4653 0.20 +0.0
5,383,332 - Pf6N2E2_4653 0.20 -3.3
5,383,332 - Pf6N2E2_4653 0.20 +0.6
5,383,332 - Pf6N2E2_4653 0.20 -0.4
5,383,332 - Pf6N2E2_4653 0.20 -0.2
5,383,431 - Pf6N2E2_4653 0.30 -1.3
5,383,431 - Pf6N2E2_4653 0.30 -0.0
5,383,493 - Pf6N2E2_4653 0.36 -1.0
5,383,650 - Pf6N2E2_4653 0.52 -1.3
5,383,650 - Pf6N2E2_4653 0.52 -0.6
5,383,650 - Pf6N2E2_4653 0.52 -1.0
5,383,650 - Pf6N2E2_4653 0.52 -1.7
5,383,650 - Pf6N2E2_4653 0.52 +1.1
5,383,779 - Pf6N2E2_4653 0.65 +0.3
5,383,779 - Pf6N2E2_4653 0.65 +0.2
5,383,779 - Pf6N2E2_4653 0.65 +0.1
5,384,040 - -1.2
5,384,040 - -0.3
5,384,040 - -1.6

Or see this region's nucleotide sequence