Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19680 and IAI47_19685 are separated by 109 nucleotides IAI47_19685 and IAI47_19690 are separated by 395 nucleotides IAI47_19690 and IAI47_19695 are separated by 576 nucleotides
IAI47_19680: IAI47_19680 - hypothetical protein, at 164,869 to 165,285
_19680
IAI47_19685: IAI47_19685 - hypothetical protein, at 165,395 to 165,853
_19685
IAI47_19690: IAI47_19690 - hypothetical protein, at 166,249 to 166,497
_19690
IAI47_19695: IAI47_19695 - GNAT family N-acetyltransferase, at 167,074 to 167,616
_19695
Position (kb) 166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.258 kb on + strand at 165.258 kb on + strand at 165.259 kb on - strand at 165.283 kb on + strand at 165.283 kb on + strand at 165.308 kb on + strand at 165.309 kb on - strand at 165.309 kb on - strand at 165.337 kb on + strand at 165.338 kb on - strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.365 kb on - strand at 165.365 kb on - strand at 165.390 kb on + strand at 165.390 kb on + strand at 165.391 kb on - strand at 165.401 kb on - strand at 165.408 kb on + strand at 165.408 kb on + strand at 165.409 kb on - strand at 165.409 kb on - strand at 165.412 kb on + strand at 165.412 kb on + strand at 165.412 kb on + strand at 165.413 kb on - strand at 165.413 kb on - strand at 165.413 kb on - strand at 165.446 kb on + strand, within IAI47_19685 at 165.446 kb on + strand, within IAI47_19685 at 165.447 kb on - strand, within IAI47_19685 at 165.511 kb on + strand, within IAI47_19685 at 165.512 kb on - strand, within IAI47_19685 at 165.546 kb on + strand, within IAI47_19685 at 165.590 kb on - strand, within IAI47_19685 at 165.609 kb on - strand, within IAI47_19685 at 165.698 kb on - strand, within IAI47_19685 at 165.698 kb on - strand, within IAI47_19685 at 165.710 kb on - strand, within IAI47_19685 at 165.822 kb on + strand at 165.822 kb on + strand at 165.822 kb on + strand at 165.825 kb on + strand at 165.826 kb on - strand at 165.828 kb on - strand at 165.853 kb on + strand at 165.854 kb on - strand at 165.854 kb on - strand at 165.858 kb on - strand at 165.902 kb on - strand at 165.904 kb on + strand at 165.904 kb on + strand at 165.905 kb on - strand at 165.905 kb on - strand at 165.906 kb on + strand at 165.907 kb on - strand at 165.907 kb on - strand at 165.907 kb on - strand at 165.907 kb on - strand at 165.948 kb on + strand at 165.948 kb on + strand at 165.981 kb on + strand at 165.981 kb on + strand at 165.981 kb on + strand at 165.981 kb on + strand at 165.982 kb on - strand at 165.989 kb on + strand at 165.989 kb on + strand at 165.989 kb on + strand at 165.990 kb on - strand at 165.991 kb on + strand at 165.992 kb on - strand at 165.992 kb on - strand at 166.187 kb on + strand at 166.187 kb on + strand at 166.187 kb on + strand at 166.187 kb on + strand at 166.188 kb on - strand at 166.188 kb on - strand at 166.193 kb on - strand at 166.193 kb on - strand at 166.250 kb on + strand at 166.250 kb on + strand at 166.250 kb on + strand at 166.251 kb on - strand at 166.384 kb on - strand, within IAI47_19690 at 166.463 kb on - strand, within IAI47_19690 at 166.480 kb on + strand at 166.480 kb on + strand at 166.480 kb on + strand at 166.481 kb on - strand at 166.481 kb on - strand at 166.481 kb on - strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.483 kb on - strand at 166.483 kb on - strand at 166.483 kb on - strand at 166.484 kb on + strand at 166.484 kb on + strand at 166.485 kb on - strand at 166.485 kb on - strand at 166.485 kb on - strand at 166.485 kb on - strand at 166.568 kb on + strand at 166.568 kb on + strand at 166.568 kb on + strand at 166.569 kb on - strand at 166.569 kb on - strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.604 kb on + strand at 166.605 kb on - strand at 166.639 kb on + strand at 166.639 kb on + strand at 166.639 kb on + strand at 166.640 kb on - strand at 166.643 kb on + strand at 166.644 kb on - strand at 166.733 kb on - strand at 166.733 kb on - strand at 166.735 kb on + strand at 166.736 kb on - strand at 166.748 kb on - strand at 166.881 kb on + strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.884 kb on + strand at 166.907 kb on + strand at 166.907 kb on + strand at 166.907 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.928 kb on - strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.981 kb on - strand at 166.981 kb on - strand at 166.981 kb on - strand at 166.981 kb on - strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.006 kb on - strand at 167.131 kb on + strand, within IAI47_19695 at 167.131 kb on + strand, within IAI47_19695 at 167.131 kb on + strand, within IAI47_19695 at 167.132 kb on - strand, within IAI47_19695 at 167.157 kb on + strand, within IAI47_19695 at 167.157 kb on + strand, within IAI47_19695 at 167.181 kb on + strand, within IAI47_19695 at 167.216 kb on + strand, within IAI47_19695 at 167.253 kb on + strand, within IAI47_19695 at 167.285 kb on + strand, within IAI47_19695 at 167.285 kb on + strand, within IAI47_19695 at 167.285 kb on + strand, within IAI47_19695 at 167.335 kb on - strand, within IAI47_19695 at 167.335 kb on - strand, within IAI47_19695 at 167.410 kb on + strand, within IAI47_19695 at 167.411 kb on - strand, within IAI47_19695 at 167.418 kb on + strand, within IAI47_19695 at 167.418 kb on + strand, within IAI47_19695 at 167.419 kb on - strand, within IAI47_19695 at 167.419 kb on - strand, within IAI47_19695 at 167.426 kb on + strand, within IAI47_19695 at 167.426 kb on + strand, within IAI47_19695 at 167.426 kb on + strand, within IAI47_19695
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 165,258 + -0.9 165,258 + +0.1 165,259 - +0.2 165,283 + +1.7 165,283 + +1.2 165,308 + +0.8 165,309 - -0.9 165,309 - +0.1 165,337 + +1.2 165,338 - +1.7 165,364 + +1.2 165,364 + +1.9 165,364 + +0.2 165,364 + +1.2 165,365 - +1.6 165,365 - +0.5 165,390 + +0.8 165,390 + +1.7 165,391 - -2.3 165,401 - +1.7 165,408 + +0.9 165,408 + -1.5 165,409 - -0.3 165,409 - +1.0 165,412 + -0.6 165,412 + -1.7 165,412 + +0.9 165,413 - +1.2 165,413 - -0.4 165,413 - +1.1 165,446 + IAI47_19685 0.11 +0.3 165,446 + IAI47_19685 0.11 +0.7 165,447 - IAI47_19685 0.11 -1.5 165,511 + IAI47_19685 0.25 -0.1 165,512 - IAI47_19685 0.25 -1.3 165,546 + IAI47_19685 0.33 +0.9 165,590 - IAI47_19685 0.42 -2.0 165,609 - IAI47_19685 0.47 -2.5 165,698 - IAI47_19685 0.66 +1.2 165,698 - IAI47_19685 0.66 -0.9 165,710 - IAI47_19685 0.69 -0.5 165,822 + +1.2 165,822 + +0.2 165,822 + +0.8 165,825 + -2.2 165,826 - -2.2 165,828 - -1.2 165,853 + +0.9 165,854 - -0.8 165,854 - +0.0 165,858 - -1.7 165,902 - +1.2 165,904 + -0.2 165,904 + +1.8 165,905 - -0.3 165,905 - +1.2 165,906 + -0.7 165,907 - -0.9 165,907 - +2.2 165,907 - +3.2 165,907 - -0.8 165,948 + -0.2 165,948 + -0.8 165,981 + -0.6 165,981 + +0.3 165,981 + -2.6 165,981 + -0.6 165,982 - -0.7 165,989 + +1.1 165,989 + -0.8 165,989 + +0.2 165,990 - -1.2 165,991 + -0.1 165,992 - -0.9 165,992 - -0.8 166,187 + +0.2 166,187 + +0.3 166,187 + +0.9 166,187 + +0.6 166,188 - -1.7 166,188 - -0.6 166,193 - +1.4 166,193 - -0.1 166,250 + +1.1 166,250 + +0.1 166,250 + -0.7 166,251 - -2.0 166,384 - IAI47_19690 0.54 +0.7 166,463 - IAI47_19690 0.86 -1.3 166,480 + -0.3 166,480 + -0.2 166,480 + -0.3 166,481 - -0.1 166,481 - -0.6 166,481 - -1.1 166,482 + +0.0 166,482 + -0.1 166,482 + -1.3 166,482 + +0.1 166,482 + -0.8 166,482 + -0.9 166,483 - -0.8 166,483 - -0.3 166,483 - -0.9 166,484 + -0.1 166,484 + -0.6 166,485 - +1.7 166,485 - +0.9 166,485 - -1.7 166,485 - +0.7 166,568 + -0.3 166,568 + -0.9 166,568 + -0.3 166,569 - +3.2 166,569 - -0.3 166,570 + -1.3 166,570 + +0.2 166,570 + +0.0 166,570 + +0.7 166,570 + +0.4 166,570 + +1.7 166,570 + -0.6 166,570 + +0.5 166,571 - +0.5 166,571 - -0.4 166,571 - -0.9 166,571 - +0.1 166,571 - +2.2 166,571 - +2.2 166,571 - +2.2 166,571 - +0.1 166,604 + +1.2 166,605 - +0.9 166,639 + +0.7 166,639 + -1.1 166,639 + +2.4 166,640 - +0.4 166,643 + +1.0 166,644 - -0.8 166,733 - +1.5 166,733 - -0.6 166,735 + -0.3 166,736 - -0.8 166,748 - +1.9 166,881 + +0.2 166,882 - +0.7 166,882 - +0.7 166,882 - -0.5 166,882 - -0.4 166,882 - -0.1 166,884 + -0.9 166,907 + +1.1 166,907 + +2.0 166,907 + -0.5 166,927 + +0.3 166,927 + +0.3 166,927 + -0.6 166,927 + +0.8 166,928 - +1.0 166,980 + +0.9 166,980 + +1.4 166,980 + -0.1 166,980 + -0.8 166,980 + +0.2 166,980 + -0.0 166,980 + -0.9 166,980 + +1.0 166,981 - +1.2 166,981 - -0.8 166,981 - +0.2 166,981 - -1.1 167,005 + +0.4 167,005 + -0.4 167,006 - -0.3 167,131 + IAI47_19695 0.10 +1.9 167,131 + IAI47_19695 0.10 -0.8 167,131 + IAI47_19695 0.10 +0.7 167,132 - IAI47_19695 0.11 +1.4 167,157 + IAI47_19695 0.15 +1.2 167,157 + IAI47_19695 0.15 +1.9 167,181 + IAI47_19695 0.20 +1.8 167,216 + IAI47_19695 0.26 +1.0 167,253 + IAI47_19695 0.33 -0.9 167,285 + IAI47_19695 0.39 +0.1 167,285 + IAI47_19695 0.39 -1.3 167,285 + IAI47_19695 0.39 -0.2 167,335 - IAI47_19695 0.48 +0.3 167,335 - IAI47_19695 0.48 +2.0 167,410 + IAI47_19695 0.62 +0.2 167,411 - IAI47_19695 0.62 +0.7 167,418 + IAI47_19695 0.63 -0.3 167,418 + IAI47_19695 0.63 +0.7 167,419 - IAI47_19695 0.64 -0.8 167,419 - IAI47_19695 0.64 -1.2 167,426 + IAI47_19695 0.65 +0.9 167,426 + IAI47_19695 0.65 +0.1 167,426 + IAI47_19695 0.65 +0.7
Or see this region's nucleotide sequence