Strain Fitness in Pantoea sp. MT58 around IAI47_16050

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,389,861	+				-1.5
3,389,869	-				+0.3
3,390,050	+		IAI47_16045	0.24	-1.3
3,390,050	+		IAI47_16045	0.24	-0.1
3,390,050	+		IAI47_16045	0.24	-0.2
3,390,068	+		IAI47_16045	0.26	+0.1
3,390,069	-		IAI47_16045	0.26	+4.9
3,390,069	-		IAI47_16045	0.26	+1.6
3,390,089	+		IAI47_16045	0.29	+0.6
3,390,089	+		IAI47_16045	0.29	+0.5
3,390,089	+		IAI47_16045	0.29	+0.3
3,390,090	-		IAI47_16045	0.29	-1.9
3,390,090	-		IAI47_16045	0.29	+1.2
3,390,101	-		IAI47_16045	0.31	+0.9
3,390,101	-		IAI47_16045	0.31	+1.1
3,390,154	+		IAI47_16045	0.38	-0.1
3,390,154	+		IAI47_16045	0.38	-1.9
3,390,154	+		IAI47_16045	0.38	-0.4
3,390,155	-		IAI47_16045	0.38	-0.9
3,390,169	+		IAI47_16045	0.39	-0.1
3,390,169	-		IAI47_16045	0.39	+0.7
3,390,268	+		IAI47_16045	0.52	+1.7
3,390,268	+		IAI47_16045	0.52	+0.3
3,390,268	+		IAI47_16045	0.52	+1.0
3,390,269	-		IAI47_16045	0.53	+2.0
3,390,269	-		IAI47_16045	0.53	+0.3
3,390,298	+		IAI47_16045	0.56	-0.3
3,390,298	+		IAI47_16045	0.56	+1.0
3,390,335	-		IAI47_16045	0.61	+2.0
3,390,352	-		IAI47_16045	0.63	+3.4
3,390,363	+		IAI47_16045	0.65	-1.9
3,390,363	+		IAI47_16045	0.65	-1.5
3,390,364	-		IAI47_16045	0.65	-1.1
3,390,364	-		IAI47_16045	0.65	+1.3
3,390,364	-		IAI47_16045	0.65	-0.5
3,390,408	+		IAI47_16045	0.71	-0.1
3,390,409	-		IAI47_16045	0.71	-1.3
3,390,517	+		IAI47_16045	0.85	+0.1
3,390,517	+		IAI47_16045	0.85	+1.3
3,390,517	+		IAI47_16045	0.85	+0.3
3,390,517	+		IAI47_16045	0.85	-0.5
3,390,518	-		IAI47_16045	0.85	-0.2
3,390,518	-		IAI47_16045	0.85	+2.1
3,390,518	-		IAI47_16045	0.85	+5.0
3,390,604	+				-0.2
3,390,604	+				+1.5
3,390,605	-				+0.7
3,390,605	-				-0.7
3,390,632	-				-0.4
3,390,632	-				+3.5
3,390,632	-				+0.8
3,390,632	-				+0.3
3,390,640	+				+0.9
3,390,640	+				+0.1
3,390,641	-				+3.5
3,390,641	-				-0.5
3,390,641	-				+0.6
3,390,641	-				+0.6
3,390,641	-				+0.3
3,390,641	-				-0.2
3,390,641	-				+1.7
3,390,644	+				+2.6
3,390,644	+				-1.3
3,390,701	-				+1.0
3,390,736	+				-1.5
3,390,736	+				-0.4
3,390,737	-				-1.4
3,390,738	+				+1.6
3,390,738	+				-0.5
3,390,739	-				-0.3
3,390,739	-				+0.9
3,390,739	-				-1.1
3,390,752	-				+2.6
3,390,753	+				-1.9
3,390,754	-				-1.1
3,390,754	-				+2.3
3,390,757	+				+0.3
3,390,758	-				-0.5
3,390,758	-				-0.2
3,390,758	-				+1.5
3,390,758	-				-0.9
3,390,781	+				-0.6
3,390,781	+				-1.3
3,390,781	+				-1.5
3,390,782	-				+1.5
3,390,782	-				+0.0
3,390,782	-				+3.3
3,390,782	-				-0.9
3,390,805	+				-0.0
3,390,806	-				-0.1
3,390,868	+				+1.2
3,390,869	-				+2.5
3,390,869	-				+0.6
3,390,938	-				-1.7
3,390,938	-				+0.9
3,391,049	+		IAI47_16050	0.11	+0.9
3,391,050	-		IAI47_16050	0.11	-0.5
3,391,050	-		IAI47_16050	0.11	+2.5
3,391,050	-		IAI47_16050	0.11	+0.7
3,391,115	+		IAI47_16050	0.13	-1.4
3,391,115	+		IAI47_16050	0.13	+1.7
3,391,115	+		IAI47_16050	0.13	+2.0
3,391,115	+		IAI47_16050	0.13	-0.1
3,391,116	-		IAI47_16050	0.13	-0.8
3,391,116	-		IAI47_16050	0.13	-0.3
3,391,116	-		IAI47_16050	0.13	-0.1
3,391,116	-		IAI47_16050	0.13	+0.5
3,391,116	-		IAI47_16050	0.13	-1.1
3,391,116	-		IAI47_16050	0.13	-1.2
3,391,162	+		IAI47_16050	0.15	+0.3
3,391,163	-		IAI47_16050	0.15	-1.0
3,391,204	+		IAI47_16050	0.17	+0.5
3,391,205	-		IAI47_16050	0.17	+1.7
3,391,205	-		IAI47_16050	0.17	+0.6
3,391,209	+		IAI47_16050	0.17	+0.3
3,391,209	+		IAI47_16050	0.17	+0.3
3,391,209	+		IAI47_16050	0.17	+0.5
3,391,209	+		IAI47_16050	0.17	-2.5
3,391,209	+		IAI47_16050	0.17	+0.5
3,391,210	-		IAI47_16050	0.17	+0.0
3,391,210	-		IAI47_16050	0.17	-1.2
3,391,210	-		IAI47_16050	0.17	+0.5
3,391,273	+		IAI47_16050	0.20	+1.5
3,391,301	+		IAI47_16050	0.21	+0.3
3,391,301	+		IAI47_16050	0.21	-0.7
3,391,301	+		IAI47_16050	0.21	-0.6
3,391,302	-		IAI47_16050	0.21	-0.1
3,391,340	+		IAI47_16050	0.23	+3.5
3,391,340	+		IAI47_16050	0.23	-1.1
3,391,340	+		IAI47_16050	0.23	-0.3
3,391,340	+		IAI47_16050	0.23	+2.5
3,391,340	+		IAI47_16050	0.23	-0.1
3,391,341	-		IAI47_16050	0.23	-0.9
3,391,341	-		IAI47_16050	0.23	+2.6
3,391,342	+		IAI47_16050	0.23	+1.0
3,391,342	+		IAI47_16050	0.23	+0.5
3,391,342	+		IAI47_16050	0.23	-0.9
3,391,342	+		IAI47_16050	0.23	-0.6
3,391,343	-		IAI47_16050	0.23	+3.6
3,391,343	-		IAI47_16050	0.23	-0.3
3,391,343	-		IAI47_16050	0.23	+0.2
3,391,394	+		IAI47_16050	0.25	+2.8
3,391,395	-		IAI47_16050	0.25	-0.1
3,391,395	-		IAI47_16050	0.25	-1.4
3,391,585	+		IAI47_16050	0.33	+0.9
3,391,585	+		IAI47_16050	0.33	-0.9
3,391,627	+		IAI47_16050	0.35	-3.1
3,391,628	-		IAI47_16050	0.35	-0.2
3,391,628	-		IAI47_16050	0.35	+0.7
3,391,628	-		IAI47_16050	0.35	+0.7
3,391,628	-		IAI47_16050	0.35	-1.2
3,391,717	+		IAI47_16050	0.39	+0.3
3,391,717	+		IAI47_16050	0.39	-2.3
3,391,718	-		IAI47_16050	0.39	-0.1
3,391,718	-		IAI47_16050	0.39	-1.5
3,391,718	-		IAI47_16050	0.39	-0.6
3,391,718	-		IAI47_16050	0.39	-0.6
3,391,729	+		IAI47_16050	0.39	-0.2
3,391,777	+		IAI47_16050	0.41	+0.5
3,391,777	+		IAI47_16050	0.41	-0.1
3,391,778	-		IAI47_16050	0.41	-1.4
3,391,778	-		IAI47_16050	0.41	-0.9
3,391,796	+		IAI47_16050	0.42	-1.1
3,391,796	+		IAI47_16050	0.42	+1.0
3,391,796	+		IAI47_16050	0.42	-1.1
3,391,796	+		IAI47_16050	0.42	-0.8
3,391,797	-		IAI47_16050	0.42	-0.7
3,391,797	-		IAI47_16050	0.42	-1.2
3,391,838	-		IAI47_16050	0.44	-0.1
3,391,848	+		IAI47_16050	0.44	+0.3
3,391,934	+		IAI47_16050	0.48	+0.3
3,391,934	+		IAI47_16050	0.48	-1.4
3,391,935	-		IAI47_16050	0.48	-1.7
3,391,935	-		IAI47_16050	0.48	+1.0
3,391,935	-		IAI47_16050	0.48	+0.5
3,391,935	-		IAI47_16050	0.48	-2.1
3,391,935	-		IAI47_16050	0.48	+2.8
3,391,935	-		IAI47_16050	0.48	+0.5
3,391,936	+		IAI47_16050	0.48	+0.4
3,391,937	-		IAI47_16050	0.48	-0.2
3,392,012	+		IAI47_16050	0.51	+0.3
3,392,012	+		IAI47_16050	0.51	-0.1
3,392,012	+		IAI47_16050	0.51	-0.1
3,392,012	+		IAI47_16050	0.51	-1.5
3,392,013	-		IAI47_16050	0.51	+0.2
3,392,013	-		IAI47_16050	0.51	+1.1
3,392,013	-		IAI47_16050	0.51	+1.6
3,392,039	+		IAI47_16050	0.52	-0.7
3,392,039	+		IAI47_16050	0.52	-0.0
3,392,039	+		IAI47_16050	0.52	-0.3
3,392,039	+		IAI47_16050	0.52	+3.1
3,392,040	-		IAI47_16050	0.53	-2.4
3,392,040	-		IAI47_16050	0.53	+0.3
3,392,040	-		IAI47_16050	0.53	-0.9
3,392,040	-		IAI47_16050	0.53	-0.0
3,392,065	+		IAI47_16050	0.54	+1.8
3,392,065	+		IAI47_16050	0.54	+0.0
3,392,066	-		IAI47_16050	0.54	+0.6
3,392,066	-		IAI47_16050	0.54	-1.4
3,392,076	-		IAI47_16050	0.54	-0.3
3,392,121	+		IAI47_16050	0.56	-0.2
3,392,121	+		IAI47_16050	0.56	+2.0
3,392,287	+		IAI47_16050	0.63	-0.8
3,392,287	+		IAI47_16050	0.63	+0.4
3,392,287	+		IAI47_16050	0.63	+1.3
3,392,288	-		IAI47_16050	0.63	-1.5
3,392,288	-		IAI47_16050	0.63	+0.5
3,392,303	+		IAI47_16050	0.64	-0.3
3,392,303	+		IAI47_16050	0.64	-1.1
3,392,304	-		IAI47_16050	0.64	+5.1
3,392,304	-		IAI47_16050	0.64	-0.3
3,392,362	+		IAI47_16050	0.66	-0.7
3,392,363	-		IAI47_16050	0.66	-0.3
3,392,420	+		IAI47_16050	0.69	+0.8
3,392,420	+		IAI47_16050	0.69	-1.3
3,392,420	+		IAI47_16050	0.69	+0.8
3,392,421	-		IAI47_16050	0.69	-0.4
3,392,421	-		IAI47_16050	0.69	-1.0
3,392,432	+		IAI47_16050	0.69	-0.7
3,392,432	+		IAI47_16050	0.69	+0.7
3,392,432	+		IAI47_16050	0.69	+2.3
3,392,432	+		IAI47_16050	0.69	-0.9
3,392,432	+		IAI47_16050	0.69	+0.2
3,392,433	-		IAI47_16050	0.69	-0.3
3,392,433	-		IAI47_16050	0.69	+0.4
3,392,433	-		IAI47_16050	0.69	-1.4
3,392,433	-		IAI47_16050	0.69	+1.3
3,392,588	+		IAI47_16050	0.76	-0.7
3,392,657	+		IAI47_16050	0.79	+1.3
3,392,657	+		IAI47_16050	0.79	+2.5
3,392,657	+		IAI47_16050	0.79	-0.6
3,392,657	+		IAI47_16050	0.79	-1.3
3,392,765	+		IAI47_16050	0.83	-0.9
3,392,765	+		IAI47_16050	0.83	+0.5
3,392,765	+		IAI47_16050	0.83	-0.2
3,392,765	+		IAI47_16050	0.83	-2.1
3,392,766	-		IAI47_16050	0.83	+0.1
3,392,766	-		IAI47_16050	0.83	+0.6
3,392,773	+		IAI47_16050	0.84	+0.4
3,392,773	+		IAI47_16050	0.84	-0.2
3,392,773	+		IAI47_16050	0.84	+2.7
3,392,773	+		IAI47_16050	0.84	+0.3
3,392,773	+		IAI47_16050	0.84	-0.0
3,392,801	+		IAI47_16050	0.85	-0.1
3,392,801	+		IAI47_16050	0.85	+0.2
3,392,801	+		IAI47_16050	0.85	+1.1
3,392,801	+		IAI47_16050	0.85	-0.7
3,392,801	+		IAI47_16050	0.85	-0.1
3,392,801	+		IAI47_16050	0.85	-1.2
3,392,802	-		IAI47_16050	0.85	+0.5
3,392,859	-		IAI47_16050	0.87	+1.1
3,392,883	+		IAI47_16050	0.88	+1.6
3,392,884	-		IAI47_16050	0.88	-1.2
3,392,891	+		IAI47_16050	0.89	-0.4
3,392,891	+		IAI47_16050	0.89	-0.2
3,392,891	+		IAI47_16050	0.89	-0.8
3,392,892	-		IAI47_16050	0.89	-0.4
3,392,950	+				+0.9
3,392,956	-				-0.8
3,392,996	+				-0.1
3,393,062	+				-1.1
3,393,062	+				+1.3
3,393,063	-				-2.2
3,393,063	-				-2.1
3,393,063	-				-1.7
3,393,063	-				+0.7
3,393,067	+				+3.2
3,393,067	+				-0.3
3,393,068	-				-0.2
3,393,127	+				-1.1
3,393,127	+				+0.8
3,393,127	+				-1.2
3,393,128	-				+0.2
3,393,128	-				-0.5
3,393,133	+				+0.0
3,393,133	+				+0.8
3,393,133	+				-1.5
3,393,133	+				-0.2
3,393,133	+				+2.3
3,393,133	+				+1.2
3,393,133	+				+1.9
3,393,133	+				-0.1
3,393,133	+				-0.4
3,393,133	+				-0.2
3,393,133	+				+0.7
3,393,133	+				+1.1
3,393,134	-				+0.3
3,393,134	-				-0.3
3,393,134	-				-0.1
3,393,134	-				+0.4
3,393,134	-				-1.1
3,393,134	-				-0.5
3,393,134	-				-0.3
3,393,134	-				-0.7
3,393,134	-				+0.0
3,393,134	-				-1.5
3,393,136	+				+0.0
3,393,187	+				-0.6
3,393,187	+				+0.3
3,393,187	+				-1.5
3,393,188	-				-1.5
3,393,188	-				-0.0
3,393,221	-				-0.4
3,393,253	-				-0.3
3,393,259	-				-0.5
3,393,259	-				+0.4
3,393,285	-				-0.1
3,393,285	-				-0.7
3,393,311	+				+2.0
3,393,311	+				-0.1
3,393,311	+				-0.5
3,393,311	+				-0.7
3,393,311	+				+0.5
3,393,312	-				+2.4
3,393,312	-				-1.7
3,393,312	-				+0.5
3,393,312	-				-0.6
3,393,312	-				+0.6
3,393,312	-				-1.1
3,393,312	-				+0.3
3,393,313	+				+0.7
3,393,313	+				+1.4
3,393,313	+				+0.6
3,393,313	+				+1.7
3,393,313	+				-0.4
3,393,313	+				+1.3
3,393,313	+				-0.2
3,393,313	+				-0.2
3,393,314	-				-0.7
3,393,314	-				-0.2
3,393,323	-				+0.3
3,393,327	+				-0.5
3,393,327	+				+3.3
3,393,328	-				+2.4
3,393,328	-				-2.5
3,393,328	-				+1.3
3,393,328	-				-0.9
3,393,328	-				+1.5
3,393,328	-				-0.3
3,393,328	-				+0.7
3,393,328	-				-1.1
3,393,343	+				-2.8
3,393,343	+				+0.3
3,393,349	+				-1.0
3,393,350	-				-0.7
3,393,350	-				+2.3
3,393,391	+				-0.2
3,393,391	+				-0.2
3,393,392	-				-0.2
3,393,397	+				+0.1
3,393,397	+				-0.5
3,393,397	+				-0.5
3,393,397	+				-0.2
3,393,397	+				+0.4
3,393,397	+				+1.9
3,393,397	+				-2.3
3,393,397	+				+0.5
3,393,397	+				+2.5
3,393,397	+				+0.7
3,393,397	+				+2.5
3,393,397	+				-0.3
3,393,397	+				+1.4
3,393,398	-				+0.3
3,393,398	-				-0.7
3,393,398	-				-0.5
3,393,398	-				+0.3
3,393,398	-				-0.7
3,393,398	-				+1.8
3,393,398	-				+1.1
3,393,398	-				-1.7
3,393,398	-				-2.0
3,393,441	-				-0.4
3,393,441	-				-2.1
3,393,441	-				+0.6
3,393,479	-				-0.7
3,393,479	-				+1.0
3,393,490	+				-1.1
3,393,490	+				+0.1
3,393,490	+				+1.0
3,393,491	-				+0.2
3,393,491	-				-1.2
3,393,534	+				+0.0
3,393,534	+				-0.7
3,393,534	+				+0.3
3,393,534	+				-0.5
3,393,535	-				+0.3
3,393,535	-				-0.6
3,393,535	-				-0.7
3,393,535	-				-0.5
3,393,537	-				-0.9
3,393,560	+				-0.6
3,393,560	+				-0.2
3,393,560	+				+2.7
3,393,560	+				+0.4
3,393,560	+				+1.1
3,393,560	+				-1.9
3,393,561	-				-1.3
3,393,561	-				+0.7
3,393,561	-				+1.4
3,393,561	-				-0.9
3,393,561	-				-0.1
3,393,561	-				-1.1
3,393,562	+				+1.2
3,393,563	-				-0.1
3,393,633	+		IAI47_16055	0.11	+0.5
3,393,633	+		IAI47_16055	0.11	+1.1
3,393,633	+		IAI47_16055	0.11	-0.2
3,393,640	+		IAI47_16055	0.11	+1.5
3,393,641	-		IAI47_16055	0.11	-0.3
3,393,712	+		IAI47_16055	0.14	-0.8
3,393,713	-		IAI47_16055	0.14	-2.6
3,393,717	-		IAI47_16055	0.14	-1.1
3,393,732	-		IAI47_16055	0.14	-1.2
3,393,732	-		IAI47_16055	0.14	-2.2
3,393,766	+		IAI47_16055	0.16	-0.2
3,393,766	+		IAI47_16055	0.16	+0.2
3,393,766	+		IAI47_16055	0.16	-0.1
3,393,766	+		IAI47_16055	0.16	-0.3
3,393,766	+		IAI47_16055	0.16	+0.3
3,393,766	+		IAI47_16055	0.16	-1.3
3,393,766	+		IAI47_16055	0.16	-0.4
3,393,767	-		IAI47_16055	0.16	-2.6
3,393,767	-		IAI47_16055	0.16	-1.5
3,393,767	-		IAI47_16055	0.16	-1.7
3,393,767	-		IAI47_16055	0.16	-0.1
3,393,767	-		IAI47_16055	0.16	+2.4
3,393,769	+		IAI47_16055	0.16	+0.3
3,393,769	+		IAI47_16055	0.16	-0.3
3,393,769	+		IAI47_16055	0.16	-1.5
3,393,770	-		IAI47_16055	0.16	+0.0
3,393,770	-		IAI47_16055	0.16	-2.3
3,393,859	+		IAI47_16055	0.19	-0.5
3,393,860	-		IAI47_16055	0.19	+1.1
3,393,860	-		IAI47_16055	0.19	+0.0
3,393,921	+		IAI47_16055	0.21	+1.5
3,393,925	+		IAI47_16055	0.21	+2.3
3,393,925	+		IAI47_16055	0.21	+1.3
3,393,925	+		IAI47_16055	0.21	-0.0
3,393,925	+		IAI47_16055	0.21	-2.1
3,393,925	+		IAI47_16055	0.21	+0.3
3,393,926	-		IAI47_16055	0.21	+4.5
3,394,017	-		IAI47_16055	0.24	-0.4
3,394,069	+		IAI47_16055	0.26	+1.4
3,394,070	-		IAI47_16055	0.26	+1.7
3,394,070	-		IAI47_16055	0.26	+0.5
3,394,070	-		IAI47_16055	0.26	+0.5
3,394,070	-		IAI47_16055	0.26	+1.0