Strain Fitness in Pantoea sp. MT58 around IAI47_16030

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,385,624	+		IAI47_16025	0.52	-0.1
3,385,625	-		IAI47_16025	0.52	+3.1
3,385,625	-		IAI47_16025	0.52	-1.1
3,385,625	-		IAI47_16025	0.52	-1.1
3,385,625	-		IAI47_16025	0.52	-0.6
3,385,625	-		IAI47_16025	0.52	+0.5
3,385,625	-		IAI47_16025	0.52	+0.6
3,385,625	-		IAI47_16025	0.52	-0.5
3,385,659	+		IAI47_16025	0.54	-2.1
3,385,659	+		IAI47_16025	0.54	+1.3
3,385,659	+		IAI47_16025	0.54	+2.0
3,385,659	+		IAI47_16025	0.54	+0.9
3,385,659	+		IAI47_16025	0.54	-0.3
3,385,660	-		IAI47_16025	0.54	+1.3
3,385,660	-		IAI47_16025	0.54	+0.6
3,385,660	-		IAI47_16025	0.54	+0.9
3,385,660	-		IAI47_16025	0.54	-0.9
3,385,660	-		IAI47_16025	0.54	+1.4
3,385,660	-		IAI47_16025	0.54	-1.4
3,385,660	-		IAI47_16025	0.54	+3.4
3,385,697	-		IAI47_16025	0.56	+0.9
3,385,768	+		IAI47_16025	0.61	-1.6
3,385,768	+		IAI47_16025	0.61	-1.0
3,385,769	-		IAI47_16025	0.61	-0.5
3,385,769	-		IAI47_16025	0.61	-1.1
3,385,769	-		IAI47_16025	0.61	-0.4
3,385,769	-		IAI47_16025	0.61	-0.0
3,385,772	-		IAI47_16025	0.61	+0.5
3,385,772	-		IAI47_16025	0.61	-0.7
3,385,772	-		IAI47_16025	0.61	-1.0
3,385,772	-		IAI47_16025	0.61	-0.9
3,385,772	-		IAI47_16025	0.61	-0.3
3,385,834	+		IAI47_16025	0.65	-0.3
3,385,835	-		IAI47_16025	0.65	+0.9
3,385,835	-		IAI47_16025	0.65	+0.5
3,385,835	-		IAI47_16025	0.65	+0.6
3,385,835	-		IAI47_16025	0.65	-1.8
3,385,842	+		IAI47_16025	0.65	+3.5
3,385,843	-		IAI47_16025	0.65	+0.9
3,385,888	+		IAI47_16025	0.68	-1.1
3,385,903	+		IAI47_16025	0.69	-0.1
3,385,903	+		IAI47_16025	0.69	+0.3
3,385,904	-		IAI47_16025	0.69	+1.5
3,385,967	+		IAI47_16025	0.73	+1.0
3,385,968	-		IAI47_16025	0.73	+0.0
3,385,990	+		IAI47_16025	0.74	-1.8
3,385,991	-		IAI47_16025	0.74	+0.0
3,385,991	-		IAI47_16025	0.74	-0.2
3,386,083	+		IAI47_16025	0.80	-1.6
3,386,084	-		IAI47_16025	0.80	+0.9
3,386,084	-		IAI47_16025	0.80	-1.1
3,386,096	-		IAI47_16025	0.80	-0.2
3,386,118	+		IAI47_16025	0.82	+1.9
3,386,118	+		IAI47_16025	0.82	+0.0
3,386,118	+		IAI47_16025	0.82	-0.3
3,386,118	+		IAI47_16025	0.82	-0.8
3,386,118	+		IAI47_16025	0.82	+0.1
3,386,119	-		IAI47_16025	0.82	+2.9
3,386,119	-		IAI47_16025	0.82	-0.3
3,386,119	-		IAI47_16025	0.82	+1.3
3,386,119	-		IAI47_16025	0.82	-0.3
3,386,119	-		IAI47_16025	0.82	-1.1
3,386,158	+		IAI47_16025	0.84	+0.0
3,386,159	-		IAI47_16025	0.84	+0.3
3,386,180	-		IAI47_16025	0.85	-0.7
3,386,180	-		IAI47_16025	0.85	-1.2
3,386,180	-		IAI47_16025	0.85	-0.3
3,386,211	+		IAI47_16025	0.87	-0.7
3,386,212	-		IAI47_16025	0.87	+0.3
3,386,346	+				+0.7
3,386,346	+				+0.3
3,386,346	+				+0.7
3,386,367	+				-0.0
3,386,367	+				+1.3
3,386,367	+				-0.1
3,386,368	-				-0.7
3,386,368	-				+0.0
3,386,368	-				-2.0
3,386,389	-				-0.3
3,386,448	+				-1.6
3,386,448	+				-0.5
3,386,448	+				-1.7
3,386,449	-				-0.1
3,386,449	-				-0.7
3,386,529	-				-1.5
3,386,529	-				+1.3
3,386,536	+				-0.1
3,386,536	+				+1.7
3,386,537	-				-0.5
3,386,584	+				+0.4
3,386,585	-				+0.3
3,386,610	+				+1.3
3,386,611	-				-0.7
3,386,611	-				+0.3
3,386,637	+				+0.8
3,386,638	-				+1.1
3,386,662	+				-0.5
3,386,682	-				-1.9
3,386,682	-				+0.0
3,386,687	+				+0.3
3,386,687	+				+0.6
3,386,687	+				+1.1
3,386,687	+				-0.2
3,386,688	-				+0.8
3,386,688	-				+1.0
3,386,688	-				-1.3
3,386,688	-				-1.0
3,386,688	-				-0.1
3,386,688	-				-0.1
3,386,830	+		IAI47_16030	0.23	+1.9
3,386,831	-		IAI47_16030	0.23	-0.4
3,386,831	-		IAI47_16030	0.23	+0.1
3,386,925	+		IAI47_16030	0.32	-0.6
3,386,926	-		IAI47_16030	0.32	-0.6
3,386,926	-		IAI47_16030	0.32	-0.1
3,386,926	-		IAI47_16030	0.32	-1.5
3,386,926	-		IAI47_16030	0.32	-0.3
3,386,926	-		IAI47_16030	0.32	-0.2
3,386,973	-		IAI47_16030	0.37	-1.5
3,386,978	+		IAI47_16030	0.38	-0.8
3,386,978	+		IAI47_16030	0.38	+2.5
3,386,979	-		IAI47_16030	0.38	-0.5
3,386,993	+		IAI47_16030	0.39	+0.6
3,386,994	-		IAI47_16030	0.39	-0.7
3,386,994	-		IAI47_16030	0.39	+1.7
3,387,071	+		IAI47_16030	0.47	-0.3
3,387,072	-		IAI47_16030	0.47	-1.4
3,387,072	-		IAI47_16030	0.47	-1.2
3,387,072	-		IAI47_16030	0.47	-1.5
3,387,103	-		IAI47_16030	0.50	-0.5
3,387,131	+		IAI47_16030	0.53	-1.9
3,387,132	-		IAI47_16030	0.53	-1.2
3,387,132	-		IAI47_16030	0.53	+0.3
3,387,209	+		IAI47_16030	0.61	+0.0
3,387,209	+		IAI47_16030	0.61	-0.7
3,387,209	+		IAI47_16030	0.61	-0.5
3,387,209	+		IAI47_16030	0.61	+4.6
3,387,210	-		IAI47_16030	0.61	+2.3
3,387,210	-		IAI47_16030	0.61	+1.2
3,387,251	+		IAI47_16030	0.65	-0.9
3,387,251	+		IAI47_16030	0.65	-0.8
3,387,251	+		IAI47_16030	0.65	-0.6
3,387,251	+		IAI47_16030	0.65	+0.3
3,387,251	+		IAI47_16030	0.65	-0.2
3,387,251	+		IAI47_16030	0.65	-1.2
3,387,252	-		IAI47_16030	0.65	+1.7
3,387,252	-		IAI47_16030	0.65	-1.7
3,387,252	-		IAI47_16030	0.65	-1.9
3,387,252	-		IAI47_16030	0.65	-0.4
3,387,269	+		IAI47_16030	0.67	-1.5
3,387,269	+		IAI47_16030	0.67	-0.3
3,387,270	-		IAI47_16030	0.67	-0.5
3,387,270	-		IAI47_16030	0.67	+0.1
3,387,299	+		IAI47_16030	0.70	+0.6
3,387,299	+		IAI47_16030	0.70	+1.4
3,387,300	-		IAI47_16030	0.70	-0.2
3,387,329	+		IAI47_16030	0.73	-0.1
3,387,329	+		IAI47_16030	0.73	+2.2
3,387,329	+		IAI47_16030	0.73	+0.0
3,387,329	+		IAI47_16030	0.73	-0.5
3,387,329	+		IAI47_16030	0.73	-1.3
3,387,330	-		IAI47_16030	0.73	-0.9
3,387,330	-		IAI47_16030	0.73	-1.3
3,387,357	+		IAI47_16030	0.76	+2.0
3,387,358	-		IAI47_16030	0.76	+2.3
3,387,394	+		IAI47_16030	0.80	-0.2
3,387,394	+		IAI47_16030	0.80	-0.2
3,387,403	+		IAI47_16030	0.81	+0.3
3,387,403	+		IAI47_16030	0.81	-2.2
3,387,404	-		IAI47_16030	0.81	-0.9
3,387,404	-		IAI47_16030	0.81	-2.3
3,387,452	+		IAI47_16030	0.86	-0.9
3,387,453	-		IAI47_16030	0.86	-1.5
3,387,453	-		IAI47_16030	0.86	+0.5
3,387,563	-				+0.1
3,387,629	+				+2.4
3,387,630	-				+1.4
3,387,651	+				+1.0
3,387,651	+				+1.7
3,387,652	-				-1.7
3,387,652	-				+2.3
3,387,695	+				-0.2
3,387,695	+				+0.5
3,387,695	+				-0.7
3,387,695	+				-1.1
3,387,696	-				+0.0
3,387,696	-				+0.5
3,387,699	+				+0.5
3,387,699	+				+1.9
3,387,699	+				-1.5
3,387,699	+				-0.2
3,387,700	-				+0.8
3,387,718	+				+1.1
3,387,718	+				-0.1
3,387,718	+				+1.3
3,387,719	-				-0.6
3,387,719	-				-1.2
3,387,719	-				+2.2
3,387,719	-				+0.5
3,387,719	-				+1.4
3,387,719	-				+0.6
3,387,719	-				-1.3
3,387,812	-		IAI47_16035	0.15	-0.3
3,387,812	-		IAI47_16035	0.15	-0.7
3,387,910	+		IAI47_16035	0.21	+1.3
3,387,910	+		IAI47_16035	0.21	+4.3
3,387,962	-		IAI47_16035	0.25	-0.7
3,387,962	-		IAI47_16035	0.25	-0.4
3,387,976	+		IAI47_16035	0.25	+1.2
3,388,059	+		IAI47_16035	0.31	+3.1
3,388,060	-		IAI47_16035	0.31	-1.5
3,388,208	+		IAI47_16035	0.40	-0.2
3,388,208	+		IAI47_16035	0.40	-0.6
3,388,208	+		IAI47_16035	0.40	+0.3
3,388,208	+		IAI47_16035	0.40	-0.5
3,388,208	+		IAI47_16035	0.40	+0.3
3,388,209	-		IAI47_16035	0.40	-0.9
3,388,209	-		IAI47_16035	0.40	+2.8
3,388,209	-		IAI47_16035	0.40	+0.6
3,388,273	+		IAI47_16035	0.44	+0.1
3,388,273	+		IAI47_16035	0.44	-0.3
3,388,273	+		IAI47_16035	0.44	+0.8
3,388,273	+		IAI47_16035	0.44	+0.1
3,388,273	+		IAI47_16035	0.44	-0.1
3,388,273	+		IAI47_16035	0.44	-0.5
3,388,274	-		IAI47_16035	0.44	+0.9
3,388,274	-		IAI47_16035	0.44	+3.8
3,388,279	+		IAI47_16035	0.44	-1.0
3,388,279	+		IAI47_16035	0.44	+0.6
3,388,279	+		IAI47_16035	0.44	-1.4
3,388,280	-		IAI47_16035	0.44	-1.1
3,388,280	-		IAI47_16035	0.44	+0.1
3,388,280	-		IAI47_16035	0.44	-0.4
3,388,301	+		IAI47_16035	0.46	+1.3
3,388,575	+		IAI47_16035	0.63	-0.9
3,388,576	-		IAI47_16035	0.63	-0.9