Strain Fitness in Pantoea sp. MT58 around IAI47_15025

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,167,136	-		IAI47_15020	0.16	-0.8
3,167,136	-		IAI47_15020	0.16	-0.4
3,167,136	-		IAI47_15020	0.16	+0.3
3,167,139	+		IAI47_15020	0.16	-0.0
3,167,139	+		IAI47_15020	0.16	-1.1
3,167,140	-		IAI47_15020	0.16	-0.2
3,167,140	-		IAI47_15020	0.16	-0.7
3,167,140	-		IAI47_15020	0.16	-0.3
3,167,140	-		IAI47_15020	0.16	-1.0
3,167,379	+		IAI47_15020	0.36	-0.3
3,167,379	+		IAI47_15020	0.36	-1.7
3,167,380	-		IAI47_15020	0.36	+0.9
3,167,380	-		IAI47_15020	0.36	-1.6
3,167,380	-		IAI47_15020	0.36	+0.8
3,167,475	+		IAI47_15020	0.44	-1.7
3,167,475	+		IAI47_15020	0.44	-0.2
3,167,475	+		IAI47_15020	0.44	+0.1
3,167,475	+		IAI47_15020	0.44	-1.0
3,167,476	-		IAI47_15020	0.44	-1.5
3,167,476	-		IAI47_15020	0.44	-0.1
3,167,477	+		IAI47_15020	0.45	+0.5
3,167,477	+		IAI47_15020	0.45	+1.4
3,167,477	+		IAI47_15020	0.45	-1.0
3,167,477	+		IAI47_15020	0.45	-1.0
3,167,477	+		IAI47_15020	0.45	-1.4
3,167,477	+		IAI47_15020	0.45	+0.8
3,167,477	+		IAI47_15020	0.45	-0.1
3,167,478	-		IAI47_15020	0.45	-0.2
3,167,478	-		IAI47_15020	0.45	+0.1
3,167,478	-		IAI47_15020	0.45	-0.1
3,167,507	+		IAI47_15020	0.47	-0.8
3,167,507	+		IAI47_15020	0.47	-1.0
3,167,517	+		IAI47_15020	0.48	+0.9
3,167,517	+		IAI47_15020	0.48	-0.8
3,167,517	+		IAI47_15020	0.48	-1.0
3,167,517	+		IAI47_15020	0.48	-0.5
3,167,518	-		IAI47_15020	0.48	-0.9
3,167,665	-		IAI47_15020	0.60	-0.4
3,167,665	-		IAI47_15020	0.60	+0.4
3,167,673	+		IAI47_15020	0.61	-1.2
3,167,674	-		IAI47_15020	0.61	+0.7
3,167,750	+		IAI47_15020	0.68	-0.6
3,167,750	+		IAI47_15020	0.68	-1.0
3,167,750	+		IAI47_15020	0.68	+0.4
3,167,750	+		IAI47_15020	0.68	-0.5
3,167,750	+		IAI47_15020	0.68	-0.8
3,167,750	+		IAI47_15020	0.68	+1.9
3,167,750	+		IAI47_15020	0.68	+0.3
3,167,751	-		IAI47_15020	0.68	+1.6
3,167,751	-		IAI47_15020	0.68	+1.1
3,167,827	-		IAI47_15020	0.74	+0.0
3,167,827	-		IAI47_15020	0.74	-0.8
3,167,866	+		IAI47_15020	0.77	-1.0
3,167,866	+		IAI47_15020	0.77	-0.5
3,167,866	+		IAI47_15020	0.77	-2.5
3,167,866	+		IAI47_15020	0.77	-0.8
3,167,867	-		IAI47_15020	0.77	-0.1
3,167,867	-		IAI47_15020	0.77	-1.2
3,167,867	-		IAI47_15020	0.77	-1.2
3,167,885	+		IAI47_15020	0.79	+0.4
3,167,885	+		IAI47_15020	0.79	+1.2
3,167,885	+		IAI47_15020	0.79	+0.9
3,167,885	+		IAI47_15020	0.79	-0.6
3,167,885	+		IAI47_15020	0.79	+0.7
3,167,885	+		IAI47_15020	0.79	-0.1
3,167,885	+		IAI47_15020	0.79	-1.6
3,167,885	+		IAI47_15020	0.79	+2.0
3,167,885	+		IAI47_15020	0.79	+0.3
3,167,885	+		IAI47_15020	0.79	+0.0
3,167,885	+		IAI47_15020	0.79	-0.1
3,167,885	+		IAI47_15020	0.79	+2.4
3,167,886	-		IAI47_15020	0.79	+1.2
3,167,886	-		IAI47_15020	0.79	+0.4
3,167,886	-		IAI47_15020	0.79	+0.8
3,167,886	-		IAI47_15020	0.79	+0.8
3,167,886	-		IAI47_15020	0.79	+0.4
3,167,886	-		IAI47_15020	0.79	-0.2
3,167,886	-		IAI47_15020	0.79	-0.9
3,167,886	-		IAI47_15020	0.79	+0.1
3,167,886	-		IAI47_15020	0.79	-1.9
3,167,886	-		IAI47_15020	0.79	+2.4
3,167,886	-		IAI47_15020	0.79	+0.4
3,167,886	-		IAI47_15020	0.79	-0.6
3,167,886	-		IAI47_15020	0.79	-0.0
3,167,886	-		IAI47_15020	0.79	-0.6
3,167,886	-		IAI47_15020	0.79	-1.4
3,167,886	-		IAI47_15020	0.79	+3.3
3,167,886	-		IAI47_15020	0.79	-0.0
3,167,886	-		IAI47_15020	0.79	-0.7
3,167,886	-		IAI47_15020	0.79	-1.6
3,167,941	-		IAI47_15020	0.84	+0.4
3,167,941	-		IAI47_15020	0.84	+0.5
3,167,941	-		IAI47_15020	0.84	-0.4
3,167,941	-		IAI47_15020	0.84	+0.4
3,167,944	+		IAI47_15020	0.84	-0.1
3,167,944	+		IAI47_15020	0.84	+0.6
3,167,944	+		IAI47_15020	0.84	-2.8
3,167,944	+		IAI47_15020	0.84	+3.2
3,167,944	+		IAI47_15020	0.84	-1.1
3,167,945	-		IAI47_15020	0.84	+1.6
3,167,945	-		IAI47_15020	0.84	+0.6
3,167,945	-		IAI47_15020	0.84	-1.4
3,167,945	-		IAI47_15020	0.84	-1.1
3,167,945	-		IAI47_15020	0.84	-1.4
3,167,945	-		IAI47_15020	0.84	-0.2
3,167,945	-		IAI47_15020	0.84	+0.4
3,167,945	-		IAI47_15020	0.84	+1.7
3,168,024	+				+0.7
3,168,024	+				-0.8
3,168,024	+				+0.5
3,168,025	-				+2.0
3,168,047	+				+0.9
3,168,047	+				-1.2
3,168,048	-				-1.0
3,168,065	+				-2.0
3,168,066	-				+0.1
3,168,066	-				+0.8
3,168,066	-				+0.4
3,168,066	-				+1.7
3,168,066	-				+0.2
3,168,090	+				+1.0
3,168,090	+				+0.8
3,168,090	+				+1.0
3,168,091	-				-1.2
3,168,091	-				-0.0
3,168,091	-				+1.2
3,168,110	+				+0.1
3,168,110	+				+1.3
3,168,111	-				-0.2
3,168,129	+				-1.3
3,168,129	+				+0.4
3,168,129	+				-0.5
3,168,130	-				-1.2
3,168,130	-				-0.1
3,168,130	-				+0.0
3,168,130	-				-1.0
3,168,130	-				+0.1
3,168,130	-				+1.4
3,168,150	-				-1.6
3,168,150	-				+0.5
3,168,159	+				+0.8
3,168,159	+				+3.0
3,168,159	+				+1.2
3,168,159	+				-0.2
3,168,159	+				-0.2
3,168,159	+				-1.0
3,168,159	+				+2.1
3,168,159	+				+1.7
3,168,159	+				+0.7
3,168,159	+				-1.4
3,168,159	+				+0.6
3,168,159	+				-0.8
3,168,160	-				-0.4
3,168,160	-				+0.8
3,168,160	-				+0.6
3,168,160	-				-1.6
3,168,160	-				+0.0
3,168,160	-				-0.2
3,168,160	-				-0.4
3,168,160	-				+2.1
3,168,160	-				+3.9
3,168,160	-				+0.6
3,168,352	+		IAI47_15025	0.28	+0.8
3,168,352	+		IAI47_15025	0.28	+1.8
3,168,353	-		IAI47_15025	0.28	+0.5
3,168,353	-		IAI47_15025	0.28	+0.2
3,168,765	+		IAI47_15025	0.81	+0.4
3,168,863	+				+0.3
3,168,863	+				-2.0
3,168,863	+				-0.0
3,168,863	+				-1.4
3,168,863	+				+3.2
3,168,864	-				+1.8
3,168,865	+				+0.4
3,168,865	+				-0.1
3,168,865	+				-0.6
3,168,865	+				+0.7
3,168,865	+				-0.1
3,168,865	+				+0.7
3,168,866	-				+2.0
3,168,866	-				-0.4
3,168,866	-				+1.4
3,168,866	-				-0.3
3,168,866	-				+0.8
3,168,930	+				-2.4
3,168,930	+				-1.0
3,168,930	+				+0.8
3,168,931	-				-0.6
3,168,931	-				-0.4
3,168,931	-				-0.6
3,168,931	-				-1.1
3,168,946	+				+1.5
3,168,946	+				-0.0
3,168,946	+				+0.6
3,168,947	-				-1.7
3,168,947	-				-1.0
3,168,947	-				+0.4
3,168,947	-				-0.5
3,168,961	+				+0.4
3,168,961	+				-0.1
3,168,961	+				-1.2
3,168,961	+				+0.6
3,168,962	-				-1.9
3,168,962	-				-1.0
3,168,992	-				-0.8
3,168,992	-				-0.8
3,169,073	-		IAI47_15030	0.10	-0.9
3,169,093	+		IAI47_15030	0.11	+0.6
3,169,094	-		IAI47_15030	0.11	-0.4
3,169,094	-		IAI47_15030	0.11	-2.6
3,169,094	-		IAI47_15030	0.11	-0.6
3,169,151	+		IAI47_15030	0.15	-1.0
3,169,152	-		IAI47_15030	0.15	+0.1
3,169,180	+		IAI47_15030	0.17	+0.4
3,169,180	+		IAI47_15030	0.17	-1.1
3,169,181	-		IAI47_15030	0.17	+1.2
3,169,181	-		IAI47_15030	0.17	-2.5
3,169,181	-		IAI47_15030	0.17	-0.5
3,169,181	-		IAI47_15030	0.17	+0.2
3,169,181	-		IAI47_15030	0.17	-1.3
3,169,234	+		IAI47_15030	0.20	-2.1
3,169,234	+		IAI47_15030	0.20	-0.9
3,169,235	-		IAI47_15030	0.20	-0.7
3,169,235	-		IAI47_15030	0.20	+0.1
3,169,249	+		IAI47_15030	0.21	-0.6
3,169,249	+		IAI47_15030	0.21	+1.4
3,169,250	-		IAI47_15030	0.21	-0.2
3,169,250	-		IAI47_15030	0.21	+0.1
3,169,290	+		IAI47_15030	0.23	+0.4
3,169,290	+		IAI47_15030	0.23	-0.1
3,169,290	+		IAI47_15030	0.23	+0.8
3,169,291	-		IAI47_15030	0.23	-1.4
3,169,291	-		IAI47_15030	0.23	+0.4
3,169,291	-		IAI47_15030	0.23	-0.3
3,169,291	-		IAI47_15030	0.23	+1.1
3,169,301	-		IAI47_15030	0.24	-1.0
3,169,332	+		IAI47_15030	0.26	+1.3
3,169,333	-		IAI47_15030	0.26	-0.9
3,169,333	-		IAI47_15030	0.26	-0.6
3,169,333	-		IAI47_15030	0.26	+1.6
3,169,411	+		IAI47_15030	0.31	+0.4
3,169,411	+		IAI47_15030	0.31	-1.0
3,169,412	-		IAI47_15030	0.31	-1.3
3,169,412	-		IAI47_15030	0.31	-0.1
3,169,412	-		IAI47_15030	0.31	+0.6
3,169,431	-		IAI47_15030	0.32	+0.6
3,169,468	+		IAI47_15030	0.34	-0.6
3,169,468	+		IAI47_15030	0.34	+1.8
3,169,470	+		IAI47_15030	0.34	+1.0
3,169,471	-		IAI47_15030	0.34	+0.4
3,169,471	-		IAI47_15030	0.34	-0.4
3,169,471	-		IAI47_15030	0.34	+1.5
3,169,471	-		IAI47_15030	0.34	+0.4
3,169,471	-		IAI47_15030	0.34	-1.3
3,169,566	+		IAI47_15030	0.40	-0.1
3,169,566	+		IAI47_15030	0.40	+1.8
3,169,567	-		IAI47_15030	0.40	-2.6
3,169,567	-		IAI47_15030	0.40	+0.3
3,169,567	-		IAI47_15030	0.40	-0.9
3,169,567	-		IAI47_15030	0.40	+1.7
3,169,567	-		IAI47_15030	0.40	-0.8
3,169,567	-		IAI47_15030	0.40	+0.1
3,169,567	-		IAI47_15030	0.40	+1.0
3,169,597	+		IAI47_15030	0.42	-0.2
3,169,598	-		IAI47_15030	0.42	+1.2
3,169,633	+		IAI47_15030	0.44	+0.6
3,169,633	+		IAI47_15030	0.44	+0.6
3,169,680	+		IAI47_15030	0.47	-0.5
3,169,680	+		IAI47_15030	0.47	-0.2
3,169,681	-		IAI47_15030	0.47	-0.1
3,169,681	-		IAI47_15030	0.47	+1.4
3,169,741	+		IAI47_15030	0.50	-1.2
3,169,741	+		IAI47_15030	0.50	-1.5
3,169,741	+		IAI47_15030	0.50	+0.0
3,169,741	+		IAI47_15030	0.50	+0.0
3,169,769	+		IAI47_15030	0.52	+0.8
3,169,769	+		IAI47_15030	0.52	+0.4
3,169,804	+		IAI47_15030	0.54	-0.2
3,169,804	+		IAI47_15030	0.54	-2.1
3,169,804	+		IAI47_15030	0.54	-0.8
3,169,804	+		IAI47_15030	0.54	-1.0
3,169,805	-		IAI47_15030	0.54	-2.1
3,169,805	-		IAI47_15030	0.54	-0.8
3,169,805	-		IAI47_15030	0.54	-0.8
3,169,807	+		IAI47_15030	0.54	-0.9
3,169,807	+		IAI47_15030	0.54	-0.0
3,169,808	-		IAI47_15030	0.55	-0.4