Strain Fitness in Pantoea sp. MT58 around IAI47_13895

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,940,997	+		IAI47_13890	0.21	-2.0
2,940,997	+		IAI47_13890	0.21	+0.5
2,941,057	+		IAI47_13890	0.26	-0.8
2,941,057	+		IAI47_13890	0.26	+1.0
2,941,057	+		IAI47_13890	0.26	+0.9
2,941,079	+		IAI47_13890	0.28	-0.8
2,941,079	+		IAI47_13890	0.28	-1.6
2,941,080	-		IAI47_13890	0.28	-0.1
2,941,080	-		IAI47_13890	0.28	-2.3
2,941,080	-		IAI47_13890	0.28	-2.4
2,941,220	-		IAI47_13890	0.40	-1.9
2,941,236	-		IAI47_13890	0.41	-1.5
2,941,237	+		IAI47_13890	0.41	+0.9
2,941,237	+		IAI47_13890	0.41	+0.3
2,941,237	+		IAI47_13890	0.41	-0.0
2,941,238	-		IAI47_13890	0.41	-1.5
2,941,238	-		IAI47_13890	0.41	-0.3
2,941,247	-		IAI47_13890	0.42	-0.6
2,941,247	-		IAI47_13890	0.42	-0.5
2,941,247	-		IAI47_13890	0.42	-2.2
2,941,247	-		IAI47_13890	0.42	-0.5
2,941,247	-		IAI47_13890	0.42	+0.9
2,941,349	+		IAI47_13890	0.50	-1.2
2,941,350	-		IAI47_13890	0.50	-1.0
2,941,350	-		IAI47_13890	0.50	+0.4
2,941,350	-		IAI47_13890	0.50	-2.0
2,941,350	-		IAI47_13890	0.50	+0.2
2,941,395	+		IAI47_13890	0.54	-0.5
2,941,420	+		IAI47_13890	0.56	-0.8
2,941,420	+		IAI47_13890	0.56	-0.3
2,941,427	-		IAI47_13890	0.57	-0.2
2,941,435	+		IAI47_13890	0.57	+0.1
2,941,435	+		IAI47_13890	0.57	-0.9
2,941,435	+		IAI47_13890	0.57	-1.0
2,941,436	-		IAI47_13890	0.57	-1.5
2,941,633	+		IAI47_13890	0.73	-0.8
2,941,633	+		IAI47_13890	0.73	+0.0
2,941,697	+		IAI47_13890	0.79	-0.5
2,941,697	+		IAI47_13890	0.79	-0.8
2,941,711	+		IAI47_13890	0.80	-1.5
2,941,711	+		IAI47_13890	0.80	+1.0
2,941,712	-		IAI47_13890	0.80	-1.6
2,941,712	-		IAI47_13890	0.80	+1.5
2,941,736	-		IAI47_13890	0.82	-0.8
2,941,816	+		IAI47_13890	0.88	-0.2
2,941,828	-		IAI47_13890	0.89	-2.6
2,941,922	-				-0.0
2,941,955	+				+0.4
2,941,955	+				-0.2
2,941,955	+				-0.8
2,941,955	+				-0.8
2,941,956	-				+0.2
2,941,960	+				+0.9
2,941,961	-				+0.3
2,941,961	-				-0.3
2,941,961	-				+0.4
2,941,961	-				+0.4
2,941,996	+				-0.5
2,941,996	+				-0.5
2,941,996	+				-1.3
2,941,996	+				+1.3
2,941,996	+				-1.2
2,941,996	+				-0.2
2,941,996	+				+1.1
2,941,996	+				+0.5
2,941,997	-				+0.1
2,941,997	-				-0.0
2,941,997	-				-1.8
2,941,997	-				+2.1
2,941,997	-				-0.3
2,942,005	+				-0.0
2,942,006	-				-1.0
2,942,013	+				+0.5
2,942,013	+				+0.2
2,942,026	-				-1.0
2,942,126	+		IAI47_13895	0.17	-0.0
2,942,126	+		IAI47_13895	0.17	+0.8
2,942,126	+		IAI47_13895	0.17	+1.5
2,942,126	+		IAI47_13895	0.17	-0.3
2,942,126	+		IAI47_13895	0.17	-1.3
2,942,126	+		IAI47_13895	0.17	-1.5
2,942,127	-		IAI47_13895	0.17	-0.7
2,942,127	-		IAI47_13895	0.17	-1.8
2,942,201	+		IAI47_13895	0.27	+0.5
2,942,201	+		IAI47_13895	0.27	+0.3
2,942,201	+		IAI47_13895	0.27	-0.3
2,942,201	+		IAI47_13895	0.27	-0.0
2,942,202	-		IAI47_13895	0.27	-0.6
2,942,202	-		IAI47_13895	0.27	+0.5
2,942,202	-		IAI47_13895	0.27	-0.5
2,942,202	-		IAI47_13895	0.27	-0.0
2,942,203	+		IAI47_13895	0.27	+0.0
2,942,204	-		IAI47_13895	0.27	+2.0
2,942,258	+		IAI47_13895	0.35	+0.5
2,942,258	+		IAI47_13895	0.35	-0.5
2,942,259	-		IAI47_13895	0.35	+1.1
2,942,259	-		IAI47_13895	0.35	-1.0
2,942,259	-		IAI47_13895	0.35	+0.7
2,942,259	-		IAI47_13895	0.35	+0.1
2,942,259	-		IAI47_13895	0.35	+0.1
2,942,259	-		IAI47_13895	0.35	-0.5
2,942,259	-		IAI47_13895	0.35	-1.5
2,942,259	-		IAI47_13895	0.35	+0.2
2,942,259	-		IAI47_13895	0.35	+1.0
2,942,294	+		IAI47_13895	0.39	+0.8
2,942,294	+		IAI47_13895	0.39	+0.2
2,942,295	-		IAI47_13895	0.40	-0.7
2,942,295	-		IAI47_13895	0.40	-2.5
2,942,295	-		IAI47_13895	0.40	-0.5
2,942,295	-		IAI47_13895	0.40	+0.2
2,942,295	-		IAI47_13895	0.40	-0.3
2,942,295	-		IAI47_13895	0.40	-0.0
2,942,308	+		IAI47_13895	0.41	-0.5
2,942,309	-		IAI47_13895	0.41	-0.8
2,942,314	+		IAI47_13895	0.42	-2.2
2,942,314	+		IAI47_13895	0.42	-0.3
2,942,314	+		IAI47_13895	0.42	-0.0
2,942,314	+		IAI47_13895	0.42	+0.4
2,942,315	-		IAI47_13895	0.42	-2.3
2,942,380	+		IAI47_13895	0.51	+0.4
2,942,380	+		IAI47_13895	0.51	+1.5
2,942,380	+		IAI47_13895	0.51	-0.3
2,942,380	+		IAI47_13895	0.51	-0.6
2,942,380	+		IAI47_13895	0.51	-0.5
2,942,380	+		IAI47_13895	0.51	+1.5
2,942,380	+		IAI47_13895	0.51	+1.1
2,942,381	-		IAI47_13895	0.51	-0.0
2,942,381	-		IAI47_13895	0.51	-0.6
2,942,381	-		IAI47_13895	0.51	-1.1
2,942,381	-		IAI47_13895	0.51	-0.3
2,942,381	-		IAI47_13895	0.51	-0.5
2,942,453	-		IAI47_13895	0.61	-0.7
2,942,453	-		IAI47_13895	0.61	-0.8
2,942,453	-		IAI47_13895	0.61	-0.3
2,942,453	-		IAI47_13895	0.61	+0.3
2,942,453	-		IAI47_13895	0.61	-1.0
2,942,453	-		IAI47_13895	0.61	+0.2
2,942,534	+		IAI47_13895	0.71	-0.0
2,942,535	-		IAI47_13895	0.71	+0.3
2,942,535	-		IAI47_13895	0.71	+0.7
2,942,615	-		IAI47_13895	0.82	+0.5
2,942,683	+				+0.1
2,942,684	-				+0.7
2,942,692	+				-0.5
2,942,692	+				-0.8
2,942,692	+				-0.0
2,942,692	+				+1.3
2,942,692	+				+0.0
2,942,692	+				+3.1
2,942,693	-				-1.5
2,942,693	-				+0.3
2,942,693	-				+0.5
2,942,693	-				+1.0
2,942,693	-				+0.7
2,942,693	-				-0.4
2,942,693	-				-0.8
2,942,693	-				-0.8
2,942,693	-				-2.0
2,942,718	-				-0.2
2,942,718	-				+1.0
2,942,718	-				-0.9
2,942,718	-				-0.9
2,942,734	+				+1.1
2,942,762	-				-0.2
2,942,776	+				-1.0
2,942,776	+				+0.5
2,942,965	+				-0.2
2,942,966	-				+0.5
2,942,970	-				-0.7
2,942,970	-				+0.8
2,942,982	+				-1.3
2,942,982	+				-1.5
2,942,982	+				+4.4
2,942,983	-				+2.9
2,942,983	-				+0.2
2,942,983	-				+1.5
2,942,986	+				-2.0
2,942,987	-				+0.4
2,943,017	+				+0.3
2,943,018	-				-1.6
2,943,018	-				-1.6
2,943,018	-				-1.0
2,943,018	-				+0.9
2,943,018	-				-0.8
2,943,024	+				+0.7
2,943,024	+				+0.2
2,943,025	-				+0.5
2,943,025	-				-1.0
2,943,025	-				+0.3
2,943,025	-				+0.3
2,943,035	+				+1.0
2,943,057	+				-0.1
2,943,057	+				-2.5
2,943,057	+				-1.6
2,943,057	+				-0.8
2,943,057	+				+1.3
2,943,058	-				-1.4
2,943,058	-				+0.7
2,943,058	-				+0.3
2,943,058	-				-0.5
2,943,058	-				-0.5
2,943,058	-				+0.7
2,943,058	-				+1.7
2,943,058	-				+0.8
2,943,058	-				-1.0
2,943,137	+				+0.8
2,943,137	+				-0.5
2,943,137	+				-0.5
2,943,137	+				-0.0
2,943,138	-				-0.0
2,943,138	-				-0.5
2,943,138	-				-0.0
2,943,138	-				+1.7
2,943,189	+				-0.6
2,943,189	+				-0.5
2,943,189	+				-0.3
2,943,190	-				-0.3
2,943,190	-				+1.5
2,943,225	+		IAI47_13900	0.10	+1.4
2,943,247	+		IAI47_13900	0.11	+0.4
2,943,270	-		IAI47_13900	0.13	-0.0
2,943,270	-		IAI47_13900	0.13	+0.1
2,943,270	-		IAI47_13900	0.13	+1.4
2,943,270	-		IAI47_13900	0.13	-0.5
2,943,292	+		IAI47_13900	0.14	-0.2
2,943,292	+		IAI47_13900	0.14	-0.5
2,943,293	-		IAI47_13900	0.14	-1.0
2,943,293	-		IAI47_13900	0.14	-1.5
2,943,376	+		IAI47_13900	0.19	-0.5
2,943,376	+		IAI47_13900	0.19	+0.5
2,943,376	+		IAI47_13900	0.19	-0.6
2,943,377	-		IAI47_13900	0.19	-0.3
2,943,430	-		IAI47_13900	0.22	-0.3
2,943,430	-		IAI47_13900	0.22	-1.6
2,943,430	-		IAI47_13900	0.22	+0.7
2,943,436	+		IAI47_13900	0.23	-1.0
2,943,436	+		IAI47_13900	0.23	-0.6
2,943,437	-		IAI47_13900	0.23	-2.6
2,943,496	+		IAI47_13900	0.26	+2.1
2,943,496	+		IAI47_13900	0.26	+0.5
2,943,496	+		IAI47_13900	0.26	+0.5
2,943,496	+		IAI47_13900	0.26	+0.7
2,943,496	+		IAI47_13900	0.26	-0.0
2,943,496	+		IAI47_13900	0.26	+1.2
2,943,496	+		IAI47_13900	0.26	+1.5
2,943,496	+		IAI47_13900	0.26	-0.5
2,943,496	+		IAI47_13900	0.26	-0.3
2,943,496	+		IAI47_13900	0.26	+2.9
2,943,496	+		IAI47_13900	0.26	+0.4
2,943,496	+		IAI47_13900	0.26	-0.0
2,943,497	-		IAI47_13900	0.26	-1.5
2,943,497	-		IAI47_13900	0.26	+0.1
2,943,497	-		IAI47_13900	0.26	+1.0
2,943,497	-		IAI47_13900	0.26	+0.7
2,943,497	-		IAI47_13900	0.26	-0.8
2,943,497	-		IAI47_13900	0.26	+3.5
2,943,497	-		IAI47_13900	0.26	+0.5
2,943,498	+		IAI47_13900	0.26	-0.4
2,943,498	+		IAI47_13900	0.26	+1.1
2,943,498	+		IAI47_13900	0.26	-0.9
2,943,499	-		IAI47_13900	0.26	-0.0
2,943,499	-		IAI47_13900	0.26	+0.7
2,943,595	+		IAI47_13900	0.32	-1.2
2,943,595	+		IAI47_13900	0.32	+3.6
2,943,595	+		IAI47_13900	0.32	-1.9
2,943,595	+		IAI47_13900	0.32	+0.9
2,943,595	+		IAI47_13900	0.32	-1.6
2,943,595	+		IAI47_13900	0.32	+0.7
2,943,595	+		IAI47_13900	0.32	-1.2
2,943,595	+		IAI47_13900	0.32	-0.0
2,943,595	+		IAI47_13900	0.32	+1.0
2,943,595	+		IAI47_13900	0.32	-0.7
2,943,596	-		IAI47_13900	0.32	-0.8
2,943,596	-		IAI47_13900	0.32	-2.5
2,943,596	-		IAI47_13900	0.32	-0.8
2,943,596	-		IAI47_13900	0.32	+0.9
2,943,652	+		IAI47_13900	0.36	-0.5
2,943,653	-		IAI47_13900	0.36	+1.5
2,943,740	+		IAI47_13900	0.41	+0.8
2,943,740	+		IAI47_13900	0.41	-0.8
2,943,740	+		IAI47_13900	0.41	-1.0
2,943,740	+		IAI47_13900	0.41	+0.1
2,943,740	+		IAI47_13900	0.41	-0.8
2,943,740	+		IAI47_13900	0.41	-0.4
2,943,740	+		IAI47_13900	0.41	-1.0
2,943,741	-		IAI47_13900	0.41	-0.6
2,943,741	-		IAI47_13900	0.41	+0.5
2,943,741	-		IAI47_13900	0.41	-1.0
2,943,741	-		IAI47_13900	0.41	+1.0
2,943,741	-		IAI47_13900	0.41	-0.6
2,943,741	-		IAI47_13900	0.41	-0.5
2,943,741	-		IAI47_13900	0.41	-1.5
2,943,741	-		IAI47_13900	0.41	-0.2
2,943,741	-		IAI47_13900	0.41	-0.8
2,943,741	-		IAI47_13900	0.41	+0.5
2,943,746	-		IAI47_13900	0.41	-0.2
2,943,746	-		IAI47_13900	0.41	+0.4