Strain Fitness in Pantoea sp. MT58 around IAI47_01725

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01720 and IAI47_01725 are separated by 135 nucleotidesIAI47_01725 and IAI47_01730 overlap by 1 nucleotidesIAI47_01730 and IAI47_01735 overlap by 8 nucleotides IAI47_01720: IAI47_01720 - AEC family transporter, at 376,435 to 377,394 _01720 IAI47_01725: IAI47_01725 - biotin-independent malonate decarboxylase subunit gamma, at 377,530 to 378,330 _01725 IAI47_01730: IAI47_01730 - biotin-independent malonate decarboxylase subunit beta, at 378,330 to 379,163 _01730 IAI47_01735: IAI47_01735 - malonate decarboxylase acyl carrier protein, at 379,156 to 379,455 _01735 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 376.579 kb on + strand, within IAI47_01720at 376.579 kb on + strand, within IAI47_01720at 376.580 kb on - strand, within IAI47_01720at 376.580 kb on - strand, within IAI47_01720at 376.591 kb on - strand, within IAI47_01720at 376.591 kb on - strand, within IAI47_01720at 376.777 kb on - strand, within IAI47_01720at 377.035 kb on + strand, within IAI47_01720at 377.035 kb on + strand, within IAI47_01720at 377.036 kb on - strand, within IAI47_01720at 377.069 kb on + strand, within IAI47_01720at 377.095 kb on + strand, within IAI47_01720at 377.095 kb on + strand, within IAI47_01720at 377.095 kb on + strand, within IAI47_01720at 377.098 kb on + strand, within IAI47_01720at 377.098 kb on + strand, within IAI47_01720at 377.099 kb on - strand, within IAI47_01720at 377.124 kb on + strand, within IAI47_01720at 377.124 kb on + strand, within IAI47_01720at 377.147 kb on + strand, within IAI47_01720at 377.148 kb on - strand, within IAI47_01720at 377.148 kb on - strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.159 kb on + strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.160 kb on - strand, within IAI47_01720at 377.165 kb on - strand, within IAI47_01720at 377.183 kb on - strand, within IAI47_01720at 377.284 kb on - strand, within IAI47_01720at 377.307 kb on + strandat 377.325 kb on + strandat 377.341 kb on + strandat 377.341 kb on + strandat 377.342 kb on - strandat 377.342 kb on - strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.349 kb on + strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.350 kb on - strandat 377.351 kb on - strandat 377.355 kb on + strandat 377.356 kb on - strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.383 kb on + strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.384 kb on - strandat 377.387 kb on + strandat 377.387 kb on + strandat 377.388 kb on - strandat 377.388 kb on - strandat 377.388 kb on - strandat 377.394 kb on + strandat 377.395 kb on - strandat 377.395 kb on - strandat 377.405 kb on + strandat 377.405 kb on + strandat 377.405 kb on + strandat 377.410 kb on - strandat 377.441 kb on + strandat 377.442 kb on - strandat 377.442 kb on - strandat 377.444 kb on - strandat 377.482 kb on + strandat 377.483 kb on - strandat 377.483 kb on - strandat 377.523 kb on + strandat 377.523 kb on + strandat 377.523 kb on + strandat 377.531 kb on + strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.532 kb on - strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.547 kb on + strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.548 kb on - strandat 377.580 kb on + strandat 377.580 kb on + strandat 377.580 kb on + strandat 377.580 kb on + strandat 377.581 kb on - strandat 377.607 kb on + strandat 377.607 kb on + strandat 377.641 kb on + strand, within IAI47_01725at 377.641 kb on + strand, within IAI47_01725at 377.641 kb on + strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.642 kb on - strand, within IAI47_01725at 377.736 kb on + strand, within IAI47_01725at 377.736 kb on + strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.737 kb on - strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.747 kb on + strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.748 kb on - strand, within IAI47_01725at 377.755 kb on - strand, within IAI47_01725at 377.919 kb on + strand, within IAI47_01725at 377.919 kb on + strand, within IAI47_01725at 377.920 kb on - strand, within IAI47_01725at 377.920 kb on - strand, within IAI47_01725at 378.029 kb on + strand, within IAI47_01725at 378.029 kb on + strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.030 kb on - strand, within IAI47_01725at 378.170 kb on + strand, within IAI47_01725at 378.202 kb on - strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.223 kb on - strand, within IAI47_01725at 378.331 kb on + strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.332 kb on - strandat 378.332 kb on - strandat 378.332 kb on - strandat 378.360 kb on - strandat 378.360 kb on - strandat 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.690 kb on - strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.746 kb on - strand, within IAI47_01730at 378.777 kb on - strand, within IAI47_01730at 379.090 kb on + strandat 379.134 kb on + strandat 379.135 kb on - strandat 379.143 kb on - strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.158 kb on - strandat 379.191 kb on + strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.198 kb on - strand, within IAI47_01735at 379.233 kb on + strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.326 kb on + strand, within IAI47_01735at 379.327 kb on - strand, within IAI47_01735

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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376,579 + IAI47_01720 0.15 +2.0
376,579 + IAI47_01720 0.15 -1.2
376,580 - IAI47_01720 0.15 -0.5
376,580 - IAI47_01720 0.15 +2.8
376,591 - IAI47_01720 0.16 -0.1
376,591 - IAI47_01720 0.16 -0.5
376,777 - IAI47_01720 0.36 -0.8
377,035 + IAI47_01720 0.62 +0.9
377,035 + IAI47_01720 0.62 +1.0
377,036 - IAI47_01720 0.63 +0.2
377,069 + IAI47_01720 0.66 -2.4
377,095 + IAI47_01720 0.69 -1.0
377,095 + IAI47_01720 0.69 -0.6
377,095 + IAI47_01720 0.69 -0.0
377,098 + IAI47_01720 0.69 -1.8
377,098 + IAI47_01720 0.69 +0.3
377,099 - IAI47_01720 0.69 -0.8
377,124 + IAI47_01720 0.72 -1.8
377,124 + IAI47_01720 0.72 -1.0
377,147 + IAI47_01720 0.74 -0.1
377,148 - IAI47_01720 0.74 -0.4
377,148 - IAI47_01720 0.74 -0.6
377,159 + IAI47_01720 0.75 -0.9
377,159 + IAI47_01720 0.75 -0.5
377,159 + IAI47_01720 0.75 -0.6
377,159 + IAI47_01720 0.75 +1.0
377,159 + IAI47_01720 0.75 -0.8
377,159 + IAI47_01720 0.75 +0.6
377,159 + IAI47_01720 0.75 -0.4
377,159 + IAI47_01720 0.75 -0.7
377,159 + IAI47_01720 0.75 -0.6
377,159 + IAI47_01720 0.75 -0.5
377,159 + IAI47_01720 0.75 -0.9
377,159 + IAI47_01720 0.75 -0.0
377,159 + IAI47_01720 0.75 +5.5
377,159 + IAI47_01720 0.75 -1.7
377,159 + IAI47_01720 0.75 -0.8
377,159 + IAI47_01720 0.75 -1.5
377,159 + IAI47_01720 0.75 +0.6
377,159 + IAI47_01720 0.75 +0.2
377,160 - IAI47_01720 0.76 -1.4
377,160 - IAI47_01720 0.76 +1.9
377,160 - IAI47_01720 0.76 +0.2
377,160 - IAI47_01720 0.76 -0.7
377,160 - IAI47_01720 0.76 +1.0
377,160 - IAI47_01720 0.76 +0.1
377,160 - IAI47_01720 0.76 +0.5
377,160 - IAI47_01720 0.76 +0.3
377,160 - IAI47_01720 0.76 -0.6
377,160 - IAI47_01720 0.76 +0.2
377,160 - IAI47_01720 0.76 +1.3
377,160 - IAI47_01720 0.76 -1.4
377,160 - IAI47_01720 0.76 +1.3
377,160 - IAI47_01720 0.76 -0.4
377,160 - IAI47_01720 0.76 -0.9
377,160 - IAI47_01720 0.76 -0.6
377,160 - IAI47_01720 0.76 -1.3
377,160 - IAI47_01720 0.76 -0.1
377,165 - IAI47_01720 0.76 -1.4
377,183 - IAI47_01720 0.78 -0.5
377,284 - IAI47_01720 0.88 -0.6
377,307 + +1.8
377,325 + +1.7
377,341 + +1.4
377,341 + -0.1
377,342 - -1.5
377,342 - +2.3
377,349 + +2.0
377,349 + +1.3
377,349 + +3.1
377,349 + +0.1
377,349 + -1.2
377,349 + -1.7
377,349 + -0.3
377,350 - -1.3
377,350 - -0.0
377,350 - -0.6
377,350 - +1.0
377,350 - -0.2
377,351 - +1.8
377,355 + -1.9
377,356 - -0.2
377,383 + +0.3
377,383 + +0.6
377,383 + -1.5
377,383 + +1.2
377,383 + -0.5
377,384 - +1.0
377,384 - -1.5
377,384 - +0.4
377,384 - -1.9
377,384 - -0.5
377,387 + +0.2
377,387 + +1.5
377,388 - -1.1
377,388 - -1.4
377,388 - -0.0
377,394 + +1.2
377,395 - -0.8
377,395 - -2.0
377,405 + -0.2
377,405 + -0.8
377,405 + -1.0
377,410 - +0.4
377,441 + +1.1
377,442 - -2.5
377,442 - -1.3
377,444 - +0.4
377,482 + +0.3
377,483 - +0.4
377,483 - -2.3
377,523 + -1.7
377,523 + +0.5
377,523 + -1.2
377,531 + +1.0
377,532 - -0.6
377,532 - -1.6
377,532 - -1.7
377,547 + -0.5
377,547 + -0.5
377,547 + +0.8
377,547 + +2.7
377,547 + -0.3
377,547 + -0.4
377,547 + -1.4
377,548 - +0.3
377,548 - +1.2
377,548 - +1.0
377,548 - +0.5
377,548 - +0.4
377,548 - -1.8
377,580 + +2.6
377,580 + +0.4
377,580 + +3.5
377,580 + -0.0
377,581 - -0.4
377,607 + +1.8
377,607 + +1.5
377,641 + IAI47_01725 0.14 -0.2
377,641 + IAI47_01725 0.14 +0.5
377,641 + IAI47_01725 0.14 +0.1
377,642 - IAI47_01725 0.14 -0.2
377,642 - IAI47_01725 0.14 +0.4
377,642 - IAI47_01725 0.14 -0.8
377,642 - IAI47_01725 0.14 +2.0
377,642 - IAI47_01725 0.14 +1.7
377,642 - IAI47_01725 0.14 -0.0
377,642 - IAI47_01725 0.14 +2.8
377,736 + IAI47_01725 0.26 -1.4
377,736 + IAI47_01725 0.26 -0.6
377,737 - IAI47_01725 0.26 -0.4
377,737 - IAI47_01725 0.26 +0.5
377,737 - IAI47_01725 0.26 -1.4
377,737 - IAI47_01725 0.26 -1.5
377,747 + IAI47_01725 0.27 -0.2
377,747 + IAI47_01725 0.27 -0.7
377,747 + IAI47_01725 0.27 -0.7
377,747 + IAI47_01725 0.27 -0.0
377,747 + IAI47_01725 0.27 -1.4
377,748 - IAI47_01725 0.27 -0.4
377,748 - IAI47_01725 0.27 -0.4
377,748 - IAI47_01725 0.27 -0.6
377,748 - IAI47_01725 0.27 -0.4
377,748 - IAI47_01725 0.27 -0.6
377,755 - IAI47_01725 0.28 -0.6
377,919 + IAI47_01725 0.49 -0.8
377,919 + IAI47_01725 0.49 -0.0
377,920 - IAI47_01725 0.49 +1.0
377,920 - IAI47_01725 0.49 -0.5
378,029 + IAI47_01725 0.62 +1.2
378,029 + IAI47_01725 0.62 -1.7
378,030 - IAI47_01725 0.62 -0.0
378,030 - IAI47_01725 0.62 +0.7
378,030 - IAI47_01725 0.62 -1.4
378,030 - IAI47_01725 0.62 -0.2
378,170 + IAI47_01725 0.80 -2.5
378,202 - IAI47_01725 0.84 -0.0
378,222 + IAI47_01725 0.86 +0.5
378,222 + IAI47_01725 0.86 +0.1
378,222 + IAI47_01725 0.86 -1.9
378,223 - IAI47_01725 0.87 -0.9
378,331 + -1.2
378,331 + -2.7
378,331 + -0.4
378,331 + +1.0
378,332 - +0.5
378,332 - -0.6
378,332 - -2.0
378,360 - +0.2
378,360 - +0.2
378,424 + IAI47_01730 0.11 -0.2
378,424 + IAI47_01730 0.11 +2.2
378,424 + IAI47_01730 0.11 -0.3
378,424 + IAI47_01730 0.11 -1.8
378,425 - IAI47_01730 0.11 -2.1
378,425 - IAI47_01730 0.11 +0.2
378,425 - IAI47_01730 0.11 -0.2
378,425 - IAI47_01730 0.11 -1.0
378,428 + IAI47_01730 0.12 -2.3
378,428 + IAI47_01730 0.12 -1.2
378,428 + IAI47_01730 0.12 +0.3
378,428 + IAI47_01730 0.12 -1.0
378,428 + IAI47_01730 0.12 +0.3
378,429 - IAI47_01730 0.12 +0.7
378,429 - IAI47_01730 0.12 +2.0
378,429 - IAI47_01730 0.12 +1.3
378,429 - IAI47_01730 0.12 +0.7
378,429 - IAI47_01730 0.12 -0.0
378,429 - IAI47_01730 0.12 -0.4
378,429 - IAI47_01730 0.12 +1.1
378,465 - IAI47_01730 0.16 +2.5
378,465 - IAI47_01730 0.16 +1.5
378,498 - IAI47_01730 0.20 -2.7
378,498 - IAI47_01730 0.20 +3.5
378,498 - IAI47_01730 0.20 -1.5
378,566 + IAI47_01730 0.28 +0.3
378,566 + IAI47_01730 0.28 +2.4
378,589 + IAI47_01730 0.31 +2.0
378,589 + IAI47_01730 0.31 +1.3
378,589 + IAI47_01730 0.31 +0.4
378,589 + IAI47_01730 0.31 -1.0
378,589 + IAI47_01730 0.31 +0.4
378,590 - IAI47_01730 0.31 -0.6
378,590 - IAI47_01730 0.31 +0.3
378,590 - IAI47_01730 0.31 +1.6
378,590 - IAI47_01730 0.31 +2.1
378,667 + IAI47_01730 0.40 -2.0
378,667 + IAI47_01730 0.40 -0.1
378,668 - IAI47_01730 0.41 -0.3
378,668 - IAI47_01730 0.41 -0.2
378,668 - IAI47_01730 0.41 -0.4
378,668 - IAI47_01730 0.41 +1.0
378,689 + IAI47_01730 0.43 -2.3
378,689 + IAI47_01730 0.43 -1.4
378,690 - IAI47_01730 0.43 -0.8
378,745 + IAI47_01730 0.50 -0.6
378,745 + IAI47_01730 0.50 +1.0
378,746 - IAI47_01730 0.50 -2.2
378,777 - IAI47_01730 0.54 +0.5
379,090 + -2.3
379,134 + -3.3
379,135 - +1.4
379,143 - +0.6
379,157 + +2.8
379,157 + +0.9
379,157 + -0.6
379,158 - +0.2
379,191 + IAI47_01735 0.12 +3.9
379,192 - IAI47_01735 0.12 +1.4
379,192 - IAI47_01735 0.12 +0.2
379,192 - IAI47_01735 0.12 +0.6
379,198 - IAI47_01735 0.14 -0.7
379,233 + IAI47_01735 0.26 -0.3
379,234 - IAI47_01735 0.26 +1.7
379,234 - IAI47_01735 0.26 -1.0
379,264 + IAI47_01735 0.36 +0.4
379,264 + IAI47_01735 0.36 +0.2
379,265 - IAI47_01735 0.36 +1.1
379,265 - IAI47_01735 0.36 +1.9
379,265 - IAI47_01735 0.36 +2.8
379,265 - IAI47_01735 0.36 +0.5
379,326 + IAI47_01735 0.57 -0.2
379,327 - IAI47_01735 0.57 -0.2

Or see this region's nucleotide sequence