Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00165 and IAI47_00170 are separated by 298 nucleotides IAI47_00170 and IAI47_00175 are separated by 58 nucleotides
IAI47_00165: IAI47_00165 - DNA replication protein DnaC, at 33,473 to 34,213
_00165
IAI47_00170: IAI47_00170 - ROK family protein, at 34,512 to 35,645
_00170
IAI47_00175: IAI47_00175 - XylR family transcriptional regulator, at 35,704 to 36,882
_00175
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 34.211 kb on + strand at 34.212 kb on - strand at 34.212 kb on - strand at 34.212 kb on - strand at 34.212 kb on - strand at 34.212 kb on - strand at 34.212 kb on - strand at 34.245 kb on + strand at 34.245 kb on + strand at 34.245 kb on + strand at 34.357 kb on - strand at 34.375 kb on + strand at 34.375 kb on + strand at 34.376 kb on - strand at 34.376 kb on - strand at 34.376 kb on - strand at 34.474 kb on + strand at 34.474 kb on + strand at 34.474 kb on + strand at 34.474 kb on + strand at 34.474 kb on + strand at 34.474 kb on + strand at 34.475 kb on - strand at 34.475 kb on - strand at 34.475 kb on - strand at 34.475 kb on - strand at 34.488 kb on - strand at 34.488 kb on - strand at 34.488 kb on - strand at 34.488 kb on - strand at 34.541 kb on - strand at 34.583 kb on + strand at 34.583 kb on + strand at 34.583 kb on + strand at 34.584 kb on - strand at 34.640 kb on + strand, within IAI47_00170 at 34.652 kb on - strand, within IAI47_00170 at 34.652 kb on - strand, within IAI47_00170 at 34.728 kb on - strand, within IAI47_00170 at 34.728 kb on - strand, within IAI47_00170 at 34.739 kb on + strand, within IAI47_00170 at 34.760 kb on + strand, within IAI47_00170 at 34.760 kb on + strand, within IAI47_00170 at 34.775 kb on + strand, within IAI47_00170 at 34.775 kb on + strand, within IAI47_00170 at 34.775 kb on + strand, within IAI47_00170 at 34.776 kb on - strand, within IAI47_00170 at 34.776 kb on - strand, within IAI47_00170 at 34.776 kb on - strand, within IAI47_00170 at 34.816 kb on - strand, within IAI47_00170 at 34.828 kb on + strand, within IAI47_00170 at 34.828 kb on + strand, within IAI47_00170 at 34.828 kb on + strand, within IAI47_00170 at 34.829 kb on - strand, within IAI47_00170 at 34.829 kb on - strand, within IAI47_00170 at 34.829 kb on - strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.846 kb on + strand, within IAI47_00170 at 34.847 kb on - strand, within IAI47_00170 at 34.847 kb on - strand, within IAI47_00170 at 34.847 kb on - strand, within IAI47_00170 at 34.847 kb on - strand, within IAI47_00170 at 34.847 kb on - strand, within IAI47_00170 at 34.847 kb on - strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.850 kb on + strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.851 kb on - strand, within IAI47_00170 at 34.856 kb on + strand, within IAI47_00170 at 34.857 kb on - strand, within IAI47_00170 at 34.857 kb on - strand, within IAI47_00170 at 34.862 kb on + strand, within IAI47_00170 at 34.862 kb on + strand, within IAI47_00170 at 34.862 kb on + strand, within IAI47_00170 at 34.862 kb on + strand, within IAI47_00170 at 34.863 kb on - strand, within IAI47_00170 at 34.863 kb on - strand, within IAI47_00170 at 34.863 kb on - strand, within IAI47_00170 at 34.921 kb on - strand, within IAI47_00170 at 34.921 kb on - strand, within IAI47_00170 at 34.992 kb on + strand, within IAI47_00170 at 35.035 kb on + strand, within IAI47_00170 at 35.066 kb on + strand, within IAI47_00170 at 35.066 kb on + strand, within IAI47_00170 at 35.066 kb on + strand, within IAI47_00170 at 35.067 kb on - strand, within IAI47_00170 at 35.067 kb on - strand, within IAI47_00170 at 35.078 kb on + strand, within IAI47_00170 at 35.079 kb on - strand, within IAI47_00170 at 35.079 kb on - strand, within IAI47_00170 at 35.140 kb on - strand, within IAI47_00170 at 35.147 kb on + strand, within IAI47_00170 at 35.148 kb on - strand, within IAI47_00170 at 35.148 kb on - strand, within IAI47_00170 at 35.176 kb on + strand, within IAI47_00170 at 35.177 kb on - strand, within IAI47_00170 at 35.312 kb on + strand, within IAI47_00170 at 35.312 kb on + strand, within IAI47_00170 at 35.435 kb on + strand, within IAI47_00170 at 35.435 kb on + strand, within IAI47_00170 at 35.435 kb on + strand, within IAI47_00170 at 35.435 kb on + strand, within IAI47_00170 at 35.436 kb on - strand, within IAI47_00170 at 35.436 kb on - strand, within IAI47_00170 at 35.469 kb on + strand, within IAI47_00170 at 35.502 kb on - strand, within IAI47_00170 at 35.509 kb on + strand, within IAI47_00170 at 35.509 kb on + strand, within IAI47_00170 at 35.543 kb on + strand at 35.555 kb on + strand at 35.555 kb on + strand at 35.643 kb on + strand at 35.643 kb on + strand at 35.643 kb on + strand at 35.643 kb on + strand at 35.644 kb on - strand at 35.644 kb on - strand at 35.666 kb on + strand at 35.705 kb on + strand at 35.705 kb on + strand at 35.705 kb on + strand at 35.706 kb on - strand at 35.735 kb on + strand at 35.757 kb on - strand at 35.777 kb on + strand at 35.777 kb on + strand at 35.777 kb on + strand at 35.778 kb on - strand at 35.783 kb on + strand at 35.783 kb on + strand at 35.783 kb on + strand at 35.783 kb on + strand at 35.784 kb on - strand at 35.784 kb on - strand at 35.784 kb on - strand at 35.784 kb on - strand at 35.784 kb on - strand at 35.784 kb on - strand at 35.935 kb on - strand, within IAI47_00175 at 35.935 kb on - strand, within IAI47_00175 at 35.976 kb on + strand, within IAI47_00175 at 35.976 kb on + strand, within IAI47_00175 at 35.976 kb on + strand, within IAI47_00175 at 35.976 kb on + strand, within IAI47_00175 at 35.976 kb on + strand, within IAI47_00175 at 35.976 kb on + strand, within IAI47_00175 at 35.977 kb on - strand, within IAI47_00175 at 35.977 kb on - strand, within IAI47_00175 at 35.986 kb on - strand, within IAI47_00175 at 35.986 kb on - strand, within IAI47_00175 at 35.995 kb on - strand, within IAI47_00175 at 36.005 kb on + strand, within IAI47_00175 at 36.005 kb on + strand, within IAI47_00175 at 36.005 kb on + strand, within IAI47_00175 at 36.005 kb on + strand, within IAI47_00175 at 36.005 kb on + strand, within IAI47_00175 at 36.005 kb on + strand, within IAI47_00175 at 36.006 kb on - strand, within IAI47_00175 at 36.006 kb on - strand, within IAI47_00175 at 36.006 kb on - strand, within IAI47_00175 at 36.006 kb on - strand, within IAI47_00175 at 36.006 kb on - strand, within IAI47_00175 at 36.117 kb on + strand, within IAI47_00175 at 36.152 kb on + strand, within IAI47_00175 at 36.206 kb on + strand, within IAI47_00175 at 36.206 kb on + strand, within IAI47_00175 at 36.226 kb on - strand, within IAI47_00175 at 36.226 kb on - strand, within IAI47_00175 at 36.226 kb on - strand, within IAI47_00175 at 36.262 kb on + strand, within IAI47_00175 at 36.262 kb on + strand, within IAI47_00175 at 36.263 kb on - strand, within IAI47_00175 at 36.413 kb on + strand, within IAI47_00175 at 36.413 kb on + strand, within IAI47_00175 at 36.413 kb on + strand, within IAI47_00175 at 36.414 kb on - strand, within IAI47_00175 at 36.414 kb on - strand, within IAI47_00175 at 36.429 kb on - strand, within IAI47_00175 at 36.429 kb on - strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.509 kb on + strand, within IAI47_00175 at 36.510 kb on - strand, within IAI47_00175 at 36.510 kb on - strand, within IAI47_00175 at 36.510 kb on - strand, within IAI47_00175 at 36.590 kb on + strand, within IAI47_00175 at 36.590 kb on + strand, within IAI47_00175 at 36.590 kb on + strand, within IAI47_00175 at 36.590 kb on + strand, within IAI47_00175 at 36.590 kb on + strand, within IAI47_00175 at 36.590 kb on + strand, within IAI47_00175 at 36.591 kb on - strand, within IAI47_00175 at 36.591 kb on - strand, within IAI47_00175 at 36.591 kb on - strand, within IAI47_00175 at 36.623 kb on + strand, within IAI47_00175 at 36.623 kb on + strand, within IAI47_00175 at 36.623 kb on + strand, within IAI47_00175 at 36.624 kb on - strand, within IAI47_00175 at 36.624 kb on - strand, within IAI47_00175 at 36.624 kb on - strand, within IAI47_00175 at 36.624 kb on - strand, within IAI47_00175 at 36.624 kb on - strand, within IAI47_00175 at 36.624 kb on - strand, within IAI47_00175
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 34,211 + -0.7 34,212 - +0.9 34,212 - -0.8 34,212 - -1.4 34,212 - +0.5 34,212 - +0.6 34,212 - -1.3 34,245 + -0.8 34,245 + -1.5 34,245 + +0.4 34,357 - +0.3 34,375 + -0.5 34,375 + -1.3 34,376 - +0.3 34,376 - -1.7 34,376 - -0.8 34,474 + +1.5 34,474 + -1.7 34,474 + -2.0 34,474 + -1.8 34,474 + -1.1 34,474 + -1.7 34,475 - +0.3 34,475 - -1.0 34,475 - +3.1 34,475 - +0.6 34,488 - +0.2 34,488 - -0.1 34,488 - -0.3 34,488 - +2.0 34,541 - -1.0 34,583 + +0.3 34,583 + -0.4 34,583 + -1.0 34,584 - +0.3 34,640 + IAI47_00170 0.11 +0.2 34,652 - IAI47_00170 0.12 +0.5 34,652 - IAI47_00170 0.12 -0.9 34,728 - IAI47_00170 0.19 -1.9 34,728 - IAI47_00170 0.19 +0.8 34,739 + IAI47_00170 0.20 -0.8 34,760 + IAI47_00170 0.22 +1.1 34,760 + IAI47_00170 0.22 -0.3 34,775 + IAI47_00170 0.23 -0.7 34,775 + IAI47_00170 0.23 +1.1 34,775 + IAI47_00170 0.23 -0.9 34,776 - IAI47_00170 0.23 -1.4 34,776 - IAI47_00170 0.23 -1.2 34,776 - IAI47_00170 0.23 +0.1 34,816 - IAI47_00170 0.27 -0.5 34,828 + IAI47_00170 0.28 +0.4 34,828 + IAI47_00170 0.28 -0.4 34,828 + IAI47_00170 0.28 +0.4 34,829 - IAI47_00170 0.28 -1.4 34,829 - IAI47_00170 0.28 -2.4 34,829 - IAI47_00170 0.28 -0.6 34,846 + IAI47_00170 0.29 -1.3 34,846 + IAI47_00170 0.29 +1.2 34,846 + IAI47_00170 0.29 -0.9 34,846 + IAI47_00170 0.29 +0.1 34,846 + IAI47_00170 0.29 -0.6 34,846 + IAI47_00170 0.29 +0.8 34,846 + IAI47_00170 0.29 +0.6 34,846 + IAI47_00170 0.29 -0.9 34,846 + IAI47_00170 0.29 +0.1 34,846 + IAI47_00170 0.29 +0.2 34,846 + IAI47_00170 0.29 +1.2 34,847 - IAI47_00170 0.30 -0.6 34,847 - IAI47_00170 0.30 -0.4 34,847 - IAI47_00170 0.30 +4.2 34,847 - IAI47_00170 0.30 -0.3 34,847 - IAI47_00170 0.30 +1.1 34,847 - IAI47_00170 0.30 +0.7 34,850 + IAI47_00170 0.30 -1.3 34,850 + IAI47_00170 0.30 +0.6 34,850 + IAI47_00170 0.30 -0.5 34,850 + IAI47_00170 0.30 -0.8 34,850 + IAI47_00170 0.30 -1.8 34,850 + IAI47_00170 0.30 -0.3 34,850 + IAI47_00170 0.30 -1.1 34,850 + IAI47_00170 0.30 +1.4 34,850 + IAI47_00170 0.30 -0.6 34,851 - IAI47_00170 0.30 +1.9 34,851 - IAI47_00170 0.30 -0.1 34,851 - IAI47_00170 0.30 +3.0 34,851 - IAI47_00170 0.30 -0.7 34,851 - IAI47_00170 0.30 -0.4 34,851 - IAI47_00170 0.30 -0.5 34,851 - IAI47_00170 0.30 -0.5 34,856 + IAI47_00170 0.30 -0.4 34,857 - IAI47_00170 0.30 -0.4 34,857 - IAI47_00170 0.30 -3.0 34,862 + IAI47_00170 0.31 -0.2 34,862 + IAI47_00170 0.31 -1.8 34,862 + IAI47_00170 0.31 +0.5 34,862 + IAI47_00170 0.31 -2.1 34,863 - IAI47_00170 0.31 -0.1 34,863 - IAI47_00170 0.31 -1.1 34,863 - IAI47_00170 0.31 -0.7 34,921 - IAI47_00170 0.36 -2.1 34,921 - IAI47_00170 0.36 -0.9 34,992 + IAI47_00170 0.42 +2.9 35,035 + IAI47_00170 0.46 -0.3 35,066 + IAI47_00170 0.49 -0.3 35,066 + IAI47_00170 0.49 +0.3 35,066 + IAI47_00170 0.49 +0.8 35,067 - IAI47_00170 0.49 -0.6 35,067 - IAI47_00170 0.49 -0.4 35,078 + IAI47_00170 0.50 -0.8 35,079 - IAI47_00170 0.50 -1.1 35,079 - IAI47_00170 0.50 -0.4 35,140 - IAI47_00170 0.55 -1.2 35,147 + IAI47_00170 0.56 +1.0 35,148 - IAI47_00170 0.56 -0.7 35,148 - IAI47_00170 0.56 +1.7 35,176 + IAI47_00170 0.59 -0.8 35,177 - IAI47_00170 0.59 +0.1 35,312 + IAI47_00170 0.71 -0.4 35,312 + IAI47_00170 0.71 -1.8 35,435 + IAI47_00170 0.81 +2.7 35,435 + IAI47_00170 0.81 -0.1 35,435 + IAI47_00170 0.81 +0.0 35,435 + IAI47_00170 0.81 -0.2 35,436 - IAI47_00170 0.81 -1.7 35,436 - IAI47_00170 0.81 -0.1 35,469 + IAI47_00170 0.84 -1.2 35,502 - IAI47_00170 0.87 -0.9 35,509 + IAI47_00170 0.88 -0.1 35,509 + IAI47_00170 0.88 +1.7 35,543 + -0.4 35,555 + -0.8 35,555 + -1.5 35,643 + -0.7 35,643 + -0.7 35,643 + -1.2 35,643 + -0.5 35,644 - +0.6 35,644 - -0.9 35,666 + +0.9 35,705 + +0.7 35,705 + -0.2 35,705 + -0.5 35,706 - -1.5 35,735 + +0.0 35,757 - +1.2 35,777 + -0.1 35,777 + +0.9 35,777 + +3.2 35,778 - -1.4 35,783 + +0.7 35,783 + -1.3 35,783 + +1.8 35,783 + +0.9 35,784 - -0.5 35,784 - -2.1 35,784 - +0.3 35,784 - +0.4 35,784 - +0.6 35,784 - -0.8 35,935 - IAI47_00175 0.20 -1.0 35,935 - IAI47_00175 0.20 -1.1 35,976 + IAI47_00175 0.23 -1.8 35,976 + IAI47_00175 0.23 -2.3 35,976 + IAI47_00175 0.23 -3.7 35,976 + IAI47_00175 0.23 -0.7 35,976 + IAI47_00175 0.23 -0.7 35,976 + IAI47_00175 0.23 +0.0 35,977 - IAI47_00175 0.23 +0.3 35,977 - IAI47_00175 0.23 +0.1 35,986 - IAI47_00175 0.24 +1.5 35,986 - IAI47_00175 0.24 -2.1 35,995 - IAI47_00175 0.25 -0.3 36,005 + IAI47_00175 0.26 -2.0 36,005 + IAI47_00175 0.26 -1.5 36,005 + IAI47_00175 0.26 +0.5 36,005 + IAI47_00175 0.26 -0.0 36,005 + IAI47_00175 0.26 +1.8 36,005 + IAI47_00175 0.26 +0.9 36,006 - IAI47_00175 0.26 +1.3 36,006 - IAI47_00175 0.26 -0.6 36,006 - IAI47_00175 0.26 -0.8 36,006 - IAI47_00175 0.26 +0.1 36,006 - IAI47_00175 0.26 +0.3 36,117 + IAI47_00175 0.35 -0.6 36,152 + IAI47_00175 0.38 +0.3 36,206 + IAI47_00175 0.43 +1.2 36,206 + IAI47_00175 0.43 -0.1 36,226 - IAI47_00175 0.44 +1.1 36,226 - IAI47_00175 0.44 -1.1 36,226 - IAI47_00175 0.44 +2.3 36,262 + IAI47_00175 0.47 -1.3 36,262 + IAI47_00175 0.47 -0.7 36,263 - IAI47_00175 0.47 +1.3 36,413 + IAI47_00175 0.60 -1.1 36,413 + IAI47_00175 0.60 -1.5 36,413 + IAI47_00175 0.60 +2.3 36,414 - IAI47_00175 0.60 -1.4 36,414 - IAI47_00175 0.60 +0.3 36,429 - IAI47_00175 0.61 -0.0 36,429 - IAI47_00175 0.61 +0.1 36,509 + IAI47_00175 0.68 -0.9 36,509 + IAI47_00175 0.68 -1.4 36,509 + IAI47_00175 0.68 +1.1 36,509 + IAI47_00175 0.68 -0.1 36,509 + IAI47_00175 0.68 +0.6 36,509 + IAI47_00175 0.68 +2.4 36,509 + IAI47_00175 0.68 -0.0 36,510 - IAI47_00175 0.68 -0.2 36,510 - IAI47_00175 0.68 -1.8 36,510 - IAI47_00175 0.68 +2.8 36,590 + IAI47_00175 0.75 -0.9 36,590 + IAI47_00175 0.75 -1.5 36,590 + IAI47_00175 0.75 -0.1 36,590 + IAI47_00175 0.75 -0.7 36,590 + IAI47_00175 0.75 +2.0 36,590 + IAI47_00175 0.75 -0.0 36,591 - IAI47_00175 0.75 -0.8 36,591 - IAI47_00175 0.75 -1.4 36,591 - IAI47_00175 0.75 -0.1 36,623 + IAI47_00175 0.78 -2.0 36,623 + IAI47_00175 0.78 +0.5 36,623 + IAI47_00175 0.78 -0.4 36,624 - IAI47_00175 0.78 -1.5 36,624 - IAI47_00175 0.78 +1.8 36,624 - IAI47_00175 0.78 -0.7 36,624 - IAI47_00175 0.78 +0.4 36,624 - IAI47_00175 0.78 -0.1 36,624 - IAI47_00175 0.78 -0.1
Or see this region's nucleotide sequence