Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21995 and HSERO_RS22000 are separated by 72 nucleotides HSERO_RS22000 and HSERO_RS22005 are separated by 17 nucleotides HSERO_RS22005 and HSERO_RS22010 are separated by 126 nucleotides HSERO_RS22010 and HSERO_RS22015 are separated by 17 nucleotides
HSERO_RS21995: HSERO_RS21995 - hypothetical protein, at 5,030,969 to 5,032,129
_RS21995
HSERO_RS22000: HSERO_RS22000 - short-chain dehydrogenase, at 5,032,202 to 5,032,969
_RS22000
HSERO_RS22005: HSERO_RS22005 - diguanylate cyclase, at 5,032,987 to 5,033,382
_RS22005
HSERO_RS22010: HSERO_RS22010 - toxin RelE, at 5,033,509 to 5,033,802
_RS22010
HSERO_RS22015: HSERO_RS22015 - DNA-binding protein, at 5,033,820 to 5,034,212
_RS22015
Position (kb) 5032
5033 Strain fitness (log2 ratio) -1
0
1 at 5032.237 kb on - strand at 5032.266 kb on + strand at 5032.429 kb on + strand, within HSERO_RS22000 at 5032.432 kb on - strand, within HSERO_RS22000 at 5032.665 kb on + strand, within HSERO_RS22000 at 5032.673 kb on - strand, within HSERO_RS22000 at 5032.685 kb on + strand, within HSERO_RS22000 at 5032.828 kb on - strand, within HSERO_RS22000 at 5032.841 kb on + strand at 5032.849 kb on - strand, within HSERO_RS22000 at 5033.466 kb on + strand at 5033.575 kb on - strand, within HSERO_RS22010 at 5033.603 kb on - strand, within HSERO_RS22010 at 5033.693 kb on - strand, within HSERO_RS22010
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM remove 5,032,237 - -0.4 5,032,266 + +1.4 5,032,429 + HSERO_RS22000 0.30 +0.9 5,032,432 - HSERO_RS22000 0.30 +0.9 5,032,665 + HSERO_RS22000 0.60 +0.3 5,032,673 - HSERO_RS22000 0.61 +1.1 5,032,685 + HSERO_RS22000 0.63 +0.6 5,032,828 - HSERO_RS22000 0.82 +0.1 5,032,841 + -1.3 5,032,849 - HSERO_RS22000 0.84 -0.9 5,033,466 + +0.0 5,033,575 - HSERO_RS22010 0.22 -0.0 5,033,603 - HSERO_RS22010 0.32 -0.4 5,033,693 - HSERO_RS22010 0.63 +0.2
Or see this region's nucleotide sequence