Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21405

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21400 and HSERO_RS21405 are separated by 10 nucleotidesHSERO_RS21405 and HSERO_RS21410 are separated by 48 nucleotides HSERO_RS21400: HSERO_RS21400 - tRNA nucleotidyl transferase, at 4,899,590 to 4,900,822 _RS21400 HSERO_RS21405: HSERO_RS21405 - glutathione S-transferase, at 4,900,833 to 4,901,534 _RS21405 HSERO_RS21410: HSERO_RS21410 - NAD-dependent dehydratase, at 4,901,583 to 4,902,551 _RS21410 Position (kb) 4900 4901 4902Strain fitness (log2 ratio) -1 0 1at 4900.926 kb on - strand, within HSERO_RS21405at 4900.976 kb on - strand, within HSERO_RS21405at 4901.024 kb on - strand, within HSERO_RS21405at 4901.644 kb on - strandat 4901.787 kb on - strand, within HSERO_RS21410at 4901.873 kb on + strand, within HSERO_RS21410at 4902.145 kb on - strandat 4902.155 kb on - strand, within HSERO_RS21410at 4902.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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4,900,926 - HSERO_RS21405 0.13 +1.1
4,900,976 - HSERO_RS21405 0.20 -0.3
4,901,024 - HSERO_RS21405 0.27 +0.3
4,901,644 - -1.5
4,901,787 - HSERO_RS21410 0.21 +0.1
4,901,873 + HSERO_RS21410 0.30 +0.1
4,902,145 - +1.7
4,902,155 - HSERO_RS21410 0.59 -0.4
4,902,480 - -0.7

Or see this region's nucleotide sequence