Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20405

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
4,671,689	+				+0.0
4,671,689	+				-0.1
4,671,689	+				+0.3
4,671,689	+				-0.1
4,671,690	+				-0.0
4,671,691	+				-0.4
4,671,691	+				+0.1
4,671,697	-				+0.6
4,671,697	-				-1.0
4,671,697	-				+0.3
4,671,697	-				-0.9
4,671,697	-				+0.1
4,671,697	-				-1.3
4,671,699	-				-0.3
4,671,805	+				+0.3
4,671,805	+				+0.5
4,671,805	+				-0.4
4,671,813	-				-1.0
4,671,813	-				+0.5
4,671,818	-				-0.2
4,671,818	-				-0.0
4,671,844	+				+0.1
4,671,844	+				+0.5
4,671,844	+				+1.3
4,671,844	+				+1.5
4,671,844	+				+0.6
4,671,848	-				-0.5
4,671,852	-				+1.4
4,671,873	+				-0.2
4,671,909	+				-0.6
4,671,918	-				+0.1
4,671,942	-				-0.1
4,671,949	-				-0.4
4,671,953	+				+0.3
4,671,954	+				-0.4
4,671,954	+				-0.4
4,671,959	+				-0.3
4,671,959	+				+1.0
4,671,959	+				+1.2
4,671,960	+				+1.0
4,671,960	+				+0.3
4,671,961	+				+0.3
4,671,961	+				+0.8
4,671,962	-				-0.1
4,671,962	-				-0.1
4,671,967	-				-0.3
4,671,967	-				+0.7
4,671,967	-				+0.3
4,671,967	-				-0.2
4,671,967	-				-0.4
4,671,967	-				-0.5
4,671,967	-				+0.4
4,671,969	-				+0.5
4,671,969	-				+0.0
4,671,969	-				+0.2
4,672,006	+				-0.6
4,672,008	+				-0.1
4,672,033	+				+0.0
4,672,133	+		HSERO_RS20405	0.11	+0.2
4,672,139	-		HSERO_RS20405	0.11	+2.0
4,672,141	+		HSERO_RS20405	0.12	-1.3
4,672,338	-		HSERO_RS20405	0.30	-0.5
4,672,431	+		HSERO_RS20405	0.38	+1.3
4,672,630	-		HSERO_RS20405	0.56	+0.8
4,672,804	-		HSERO_RS20405	0.72	-0.7
4,672,937	-		HSERO_RS20405	0.84	+1.0
4,673,015	-				-0.5
4,673,057	-				-0.5
4,673,061	+				-0.5
4,673,062	-				+0.1
4,673,063	+				-0.3
4,673,069	+				+0.9
4,673,069	+				-0.5
4,673,071	-				-1.8
4,673,081	+				-0.6
4,673,098	+				+0.1
4,673,098	+				+0.3
4,673,103	+				+0.3
4,673,105	-				+0.6
4,673,106	-				-0.3
4,673,109	+				+0.5
4,673,125	+				+0.6
4,673,125	+				+0.3
4,673,126	-				-0.1
4,673,133	-				-0.4
4,673,133	-				-0.5
4,673,139	+		HSERO_RS20410	0.13	-0.3
4,673,139	+		HSERO_RS20410	0.13	-0.4
4,673,140	+		HSERO_RS20410	0.13	-0.2
4,673,140	+		HSERO_RS20410	0.13	+0.6
4,673,140	+		HSERO_RS20410	0.13	+0.1
4,673,140	+		HSERO_RS20410	0.13	+0.6
4,673,140	+		HSERO_RS20410	0.13	+0.2
4,673,142	+		HSERO_RS20410	0.14	-0.4
4,673,147	+		HSERO_RS20410	0.16	+0.0
4,673,147	-		HSERO_RS20410	0.16	-0.5
4,673,147	-		HSERO_RS20410	0.16	+0.5
4,673,147	-		HSERO_RS20410	0.16	+0.5
4,673,148	-		HSERO_RS20410	0.17	-0.8
4,673,148	-		HSERO_RS20410	0.17	-0.0
4,673,155	-		HSERO_RS20410	0.20	-0.1
4,673,155	-		HSERO_RS20410	0.20	-0.3
4,673,163	+		HSERO_RS20410	0.24	-1.2
4,673,165	+		HSERO_RS20410	0.25	-0.5
4,673,186	+		HSERO_RS20410	0.35	-0.3
4,673,190	+		HSERO_RS20410	0.37	+0.4
4,673,198	+		HSERO_RS20410	0.40	-0.4
4,673,200	-		HSERO_RS20410	0.41	+1.0
4,673,202	+		HSERO_RS20410	0.42	-0.7
4,673,202	+		HSERO_RS20410	0.42	+0.0
4,673,202	+		HSERO_RS20410	0.42	-0.2
4,673,202	+		HSERO_RS20410	0.42	-0.1
4,673,210	-		HSERO_RS20410	0.46	-0.5
4,673,211	-		HSERO_RS20410	0.46	-1.5
4,673,211	-		HSERO_RS20410	0.46	-0.0
4,673,213	+		HSERO_RS20410	0.47	+1.2
4,673,213	+		HSERO_RS20410	0.47	-0.0
4,673,213	+		HSERO_RS20410	0.47	+0.2
4,673,213	+		HSERO_RS20410	0.47	+0.2
4,673,213	+		HSERO_RS20410	0.47	+0.1
4,673,213	+		HSERO_RS20410	0.47	+0.3
4,673,213	+		HSERO_RS20410	0.47	+0.5
4,673,213	+		HSERO_RS20410	0.47	-0.5
4,673,221	+		HSERO_RS20410	0.51	+2.0
4,673,221	-		HSERO_RS20410	0.51	-0.2
4,673,221	-		HSERO_RS20410	0.51	-0.7
4,673,221	-		HSERO_RS20410	0.51	-0.1
4,673,229	-		HSERO_RS20410	0.55	-0.5
4,673,265	+		HSERO_RS20410	0.72	+0.1
4,673,265	-				-0.5
4,673,278	-		HSERO_RS20410	0.78	+0.1
4,673,303	+				+0.3
4,673,328	+				+0.3
4,673,345	-				-0.2
4,673,355	-				-1.3
4,673,370	+				-0.2
4,673,370	+				+0.0
4,673,370	+				+0.3
4,673,370	+				-0.3
4,673,370	+				-1.0
4,673,370	+				-0.4
4,673,377	-				-0.2
4,673,378	-				-0.2
4,673,378	-				+0.3
4,673,379	-				+1.4
4,673,452	-		HSERO_RS20415	0.33	-0.6
4,673,460	+		HSERO_RS20415	0.36	-1.0
4,673,468	-		HSERO_RS20415	0.38	-1.3
4,673,487	+		HSERO_RS20415	0.45	-0.7
4,673,492	+		HSERO_RS20415	0.47	-0.3
4,673,495	-		HSERO_RS20415	0.48	-1.2
4,673,497	+		HSERO_RS20415	0.48	-0.4
4,673,505	-		HSERO_RS20415	0.51	-0.4
4,673,527	+		HSERO_RS20415	0.59	+0.0
4,673,538	+		HSERO_RS20415	0.63	+0.6
4,673,539	+		HSERO_RS20415	0.63	-1.3
4,673,539	+		HSERO_RS20415	0.63	-0.3
4,673,546	+		HSERO_RS20415	0.65	-0.9
4,673,551	+		HSERO_RS20415	0.67	-0.5
4,673,559	-		HSERO_RS20415	0.70	-0.5
4,673,559	-		HSERO_RS20415	0.70	+0.3
4,673,565	+		HSERO_RS20415	0.72	+0.1
4,673,573	-		HSERO_RS20415	0.75	-0.5
4,673,573	-		HSERO_RS20415	0.75	-0.0
4,673,584	-		HSERO_RS20415	0.78	-0.5
4,673,589	-		HSERO_RS20415	0.80	-0.1
4,673,591	+		HSERO_RS20415	0.81	+0.6
4,673,591	+		HSERO_RS20415	0.81	+0.9
4,673,599	-		HSERO_RS20415	0.84	+0.1
4,673,689	-				-0.8
4,673,689	-				-0.7
4,673,709	+				-0.2
4,673,709	+				+0.2
4,673,717	-				+0.1
4,673,802	-				-0.2
4,673,804	+				+0.6
4,673,804	+				-0.2
4,673,804	+				-0.1
4,673,812	-				-0.5
4,673,812	-				-0.1
4,673,813	-				-0.5
4,673,813	-				-0.1
4,673,813	-				+0.3
4,673,813	-				-0.3
4,673,820	+				+0.0
4,673,828	-				-0.4
4,673,831	-				-0.3
4,673,833	+				+0.8
4,673,843	+				+0.3
4,673,856	+				-0.7
4,673,856	-				+0.2
4,673,865	-				-0.2
4,673,867	+				-0.2
4,673,878	-				+0.8
4,673,895	+				+1.4
4,673,910	-				+0.3
4,673,924	-				-0.6
4,673,924	-				+0.4
4,673,924	-				-0.8
4,673,934	-				+0.8
4,673,945	+				+0.2
4,673,945	-				+0.1
4,673,973	+				-0.2
4,673,981	-				+0.3
4,673,993	+				-0.0
4,674,046	-				+0.8
4,674,050	+				-0.5
4,674,058	+				-0.1
4,674,059	+				+0.1
4,674,067	-				-0.6
4,674,082	+				+0.3