Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19495

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19485 and HSERO_RS19490 are separated by 84 nucleotidesHSERO_RS19490 and HSERO_RS19495 are separated by 77 nucleotidesHSERO_RS19495 and HSERO_RS19500 are separated by 3 nucleotides HSERO_RS19485: HSERO_RS19485 - ubiquinone/menaquinone biosynthesis methyltransferase, at 4,465,010 to 4,465,744 _RS19485 HSERO_RS19490: HSERO_RS19490 - hypothetical protein, at 4,465,829 to 4,466,251 _RS19490 HSERO_RS19495: HSERO_RS19495 - histidine triad (HIT) protein, at 4,466,329 to 4,466,781 _RS19495 HSERO_RS19500: HSERO_RS19500 - Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data), at 4,466,785 to 4,470,786 _RS19500 Position (kb) 4466 4467Strain fitness (log2 ratio) -1 0 1at 4465.790 kb on + strandat 4465.820 kb on + strandat 4466.004 kb on + strand, within HSERO_RS19490at 4466.443 kb on - strand, within HSERO_RS19495at 4466.550 kb on + strand, within HSERO_RS19495at 4466.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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4,465,790 + -0.5
4,465,820 + +0.2
4,466,004 + HSERO_RS19490 0.41 -0.3
4,466,443 - HSERO_RS19495 0.25 +0.2
4,466,550 + HSERO_RS19495 0.49 +0.8
4,466,608 - +1.0

Or see this region's nucleotide sequence