Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17105

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17090 and HSERO_RS17095 overlap by 7 nucleotidesHSERO_RS17095 and HSERO_RS17100 are separated by 304 nucleotidesHSERO_RS17100 and HSERO_RS17105 are separated by 147 nucleotidesHSERO_RS17105 and HSERO_RS17110 are separated by 71 nucleotidesHSERO_RS17110 and HSERO_RS17115 are separated by 100 nucleotides HSERO_RS17090: HSERO_RS17090 - growth inhibitor PemK, at 3,915,386 to 3,915,706 _RS17090 HSERO_RS17095: HSERO_RS17095 - antitoxin, at 3,915,700 to 3,915,954 _RS17095 HSERO_RS17100: HSERO_RS17100 - tRNA-Val, at 3,916,259 to 3,916,333 _RS17100 HSERO_RS17105: HSERO_RS17105 - DNA polymerase III subunit epsilon, at 3,916,481 to 3,917,215 _RS17105 HSERO_RS17110: HSERO_RS17110 - ribonuclease H, at 3,917,287 to 3,917,718 _RS17110 HSERO_RS17115: HSERO_RS17115 - methyltransferase type 11, at 3,917,819 to 3,918,613 _RS17115 Position (kb) 3916 3917 3918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3915.496 kb on - strand, within HSERO_RS17090at 3915.560 kb on - strand, within HSERO_RS17090at 3915.633 kb on + strand, within HSERO_RS17090at 3915.661 kb on + strand, within HSERO_RS17090at 3915.661 kb on + strand, within HSERO_RS17090at 3915.750 kb on + strand, within HSERO_RS17095at 3916.067 kb on + strandat 3916.166 kb on + strandat 3916.176 kb on + strandat 3916.478 kb on + strandat 3916.726 kb on - strand, within HSERO_RS17105at 3916.733 kb on - strand, within HSERO_RS17105at 3917.247 kb on + strandat 3917.278 kb on - strandat 3917.494 kb on + strand, within HSERO_RS17110at 3917.494 kb on + strand, within HSERO_RS17110at 3917.548 kb on + strand, within HSERO_RS17110at 3917.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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3,915,496 - HSERO_RS17090 0.34 +1.0
3,915,560 - HSERO_RS17090 0.54 -0.5
3,915,633 + HSERO_RS17090 0.77 -0.4
3,915,661 + HSERO_RS17090 0.86 -0.5
3,915,661 + HSERO_RS17090 0.86 -0.4
3,915,750 + HSERO_RS17095 0.20 -0.1
3,916,067 + +0.0
3,916,166 + +0.4
3,916,176 + -0.0
3,916,478 + +0.2
3,916,726 - HSERO_RS17105 0.33 +0.9
3,916,733 - HSERO_RS17105 0.34 +3.3
3,917,247 + +0.4
3,917,278 - -0.4
3,917,494 + HSERO_RS17110 0.48 -2.5
3,917,494 + HSERO_RS17110 0.48 -0.9
3,917,548 + HSERO_RS17110 0.60 -0.8
3,917,722 + +2.0

Or see this region's nucleotide sequence