Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11055

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS11050 and HSERO_RS11055 are separated by 21 nucleotidesHSERO_RS11055 and HSERO_RS11060 are separated by 268 nucleotides HSERO_RS11050: HSERO_RS11050 - peptidase S66, at 2,491,362 to 2,492,366 _RS11050 HSERO_RS11055: HSERO_RS11055 - membrane protein, at 2,492,388 to 2,492,960 _RS11055 HSERO_RS11060: HSERO_RS11060 - ABC transporter ATP-binding protein, at 2,493,229 to 2,494,803 _RS11060 Position (kb) 2492 2493Strain fitness (log2 ratio) -1 0 1at 2492.466 kb on - strand, within HSERO_RS11055at 2492.532 kb on + strand, within HSERO_RS11055at 2492.665 kb on + strand, within HSERO_RS11055at 2492.727 kb on - strand, within HSERO_RS11055at 2492.985 kb on + strandat 2493.542 kb on + strand, within HSERO_RS11060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
remove
2,492,466 - HSERO_RS11055 0.14 -0.1
2,492,532 + HSERO_RS11055 0.25 +0.8
2,492,665 + HSERO_RS11055 0.48 +1.1
2,492,727 - HSERO_RS11055 0.59 +0.1
2,492,985 + +0.2
2,493,542 + HSERO_RS11060 0.20 -1.5

Or see this region's nucleotide sequence