Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08280 and HSERO_RS08285 overlap by 4 nucleotides HSERO_RS08285 and HSERO_RS08290 overlap by 1 nucleotides HSERO_RS08290 and HSERO_RS08295 are separated by 197 nucleotides
HSERO_RS08280: HSERO_RS08280 - leucine/isoleucine/valine transporter permease subunit, at 1,885,834 to 1,887,060
_RS08280
HSERO_RS08285: HSERO_RS08285 - amino acid ABC transporter ATP-binding protein, at 1,887,057 to 1,887,833
_RS08285
HSERO_RS08290: HSERO_RS08290 - leucine/isoleucine/valine transporter ATP-binding subunit, at 1,887,833 to 1,888,537
_RS08290
HSERO_RS08295: HSERO_RS08295 - hypothetical protein, at 1,888,735 to 1,890,912
_RS08295
Position (kb) 1887
1888 Strain fitness (log2 ratio) -2
-1
0
1 at 1886.143 kb on - strand, within HSERO_RS08280 at 1886.181 kb on - strand at 1886.261 kb on + strand, within HSERO_RS08280 at 1886.261 kb on + strand, within HSERO_RS08280 at 1886.269 kb on - strand, within HSERO_RS08280 at 1886.269 kb on - strand, within HSERO_RS08280 at 1886.316 kb on + strand, within HSERO_RS08280 at 1886.809 kb on + strand, within HSERO_RS08280 at 1887.087 kb on + strand at 1887.204 kb on + strand, within HSERO_RS08285 at 1887.314 kb on - strand, within HSERO_RS08285 at 1887.314 kb on - strand, within HSERO_RS08285 at 1887.416 kb on + strand, within HSERO_RS08285 at 1887.511 kb on - strand, within HSERO_RS08285 at 1888.378 kb on + strand, within HSERO_RS08290 at 1888.561 kb on - strand at 1888.721 kb on + strand at 1888.750 kb on - strand at 1888.767 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM remove 1,886,143 - HSERO_RS08280 0.25 +0.4 1,886,181 - -2.0 1,886,261 + HSERO_RS08280 0.35 +0.1 1,886,261 + HSERO_RS08280 0.35 +0.3 1,886,269 - HSERO_RS08280 0.35 -0.2 1,886,269 - HSERO_RS08280 0.35 -0.7 1,886,316 + HSERO_RS08280 0.39 -0.3 1,886,809 + HSERO_RS08280 0.79 -0.6 1,887,087 + +1.1 1,887,204 + HSERO_RS08285 0.19 +1.1 1,887,314 - HSERO_RS08285 0.33 -0.1 1,887,314 - HSERO_RS08285 0.33 +0.4 1,887,416 + HSERO_RS08285 0.46 +0.1 1,887,511 - HSERO_RS08285 0.58 +1.3 1,888,378 + HSERO_RS08290 0.77 -0.2 1,888,561 - -0.6 1,888,721 + -0.4 1,888,750 - -2.4 1,888,767 + -0.2
Or see this region's nucleotide sequence