Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04050

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04045 and HSERO_RS04050 overlap by 11 nucleotidesHSERO_RS04050 and HSERO_RS04055 overlap by 4 nucleotides HSERO_RS04045: HSERO_RS04045 - pilus assembly protein, at 885,696 to 886,961 _RS04045 HSERO_RS04050: HSERO_RS04050 - type IV Tfp pilus assembly PilP protein, at 886,951 to 887,460 _RS04050 HSERO_RS04055: HSERO_RS04055 - secretion system protein E, at 887,457 to 889,082 _RS04055 Position (kb) 886 887 888Strain fitness (log2 ratio) -1 0 1 2at 885.982 kb on + strand, within HSERO_RS04045at 886.327 kb on + strand, within HSERO_RS04045at 886.444 kb on - strand, within HSERO_RS04045at 886.648 kb on - strand, within HSERO_RS04045at 886.652 kb on - strand, within HSERO_RS04045at 887.009 kb on - strand, within HSERO_RS04050at 887.064 kb on + strand, within HSERO_RS04050at 887.224 kb on + strand, within HSERO_RS04050at 887.225 kb on - strand, within HSERO_RS04050at 887.283 kb on + strand, within HSERO_RS04050at 887.437 kb on + strandat 887.445 kb on - strandat 887.773 kb on + strand, within HSERO_RS04055at 887.975 kb on + strand, within HSERO_RS04055at 887.983 kb on - strand, within HSERO_RS04055

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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885,982 + HSERO_RS04045 0.23 +0.0
886,327 + HSERO_RS04045 0.50 -1.1
886,444 - HSERO_RS04045 0.59 +0.1
886,648 - HSERO_RS04045 0.75 +0.7
886,652 - HSERO_RS04045 0.76 +1.0
887,009 - HSERO_RS04050 0.11 +0.6
887,064 + HSERO_RS04050 0.22 +1.4
887,224 + HSERO_RS04050 0.54 -0.3
887,225 - HSERO_RS04050 0.54 -0.8
887,283 + HSERO_RS04050 0.65 +1.8
887,437 + -0.7
887,445 - -0.2
887,773 + HSERO_RS04055 0.19 +0.4
887,975 + HSERO_RS04055 0.32 +0.5
887,983 - HSERO_RS04055 0.32 -0.9

Or see this region's nucleotide sequence