Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03655

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03650 and HSERO_RS03655 are separated by 43 nucleotidesHSERO_RS03655 and HSERO_RS03660 are separated by 30 nucleotides HSERO_RS03650: HSERO_RS03650 - Mannose isomerase (EC 5.3.1.7) (from data), at 797,158 to 798,348 _RS03650 HSERO_RS03655: HSERO_RS03655 - ABC transporter substrate-binding protein, at 798,392 to 799,237 _RS03655 HSERO_RS03660: HSERO_RS03660 - diguanylate cyclase, at 799,268 to 800,668 _RS03660 Position (kb) 798 799 800Strain fitness (log2 ratio) -1 0 1at 797.592 kb on + strand, within HSERO_RS03650at 797.756 kb on + strandat 797.796 kb on + strand, within HSERO_RS03650at 797.818 kb on - strand, within HSERO_RS03650at 797.956 kb on - strand, within HSERO_RS03650at 798.106 kb on + strand, within HSERO_RS03650at 798.262 kb on - strandat 798.332 kb on - strandat 798.359 kb on + strandat 798.367 kb on - strandat 798.416 kb on + strandat 798.513 kb on + strand, within HSERO_RS03655at 798.708 kb on + strand, within HSERO_RS03655at 798.846 kb on + strand, within HSERO_RS03655at 798.995 kb on + strand, within HSERO_RS03655at 799.136 kb on + strand, within HSERO_RS03655at 799.255 kb on + strandat 799.263 kb on - strandat 799.427 kb on + strand, within HSERO_RS03660at 799.566 kb on - strand, within HSERO_RS03660at 799.806 kb on + strand, within HSERO_RS03660at 799.806 kb on + strand, within HSERO_RS03660at 799.938 kb on + strand, within HSERO_RS03660at 800.013 kb on - strand, within HSERO_RS03660at 800.209 kb on - strand, within HSERO_RS03660

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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797,592 + HSERO_RS03650 0.36 +0.7
797,756 + -1.5
797,796 + HSERO_RS03650 0.54 -1.2
797,818 - HSERO_RS03650 0.55 -0.8
797,956 - HSERO_RS03650 0.67 -0.4
798,106 + HSERO_RS03650 0.80 -0.5
798,262 - -0.8
798,332 - +1.3
798,359 + -0.3
798,367 - +0.0
798,416 + -1.0
798,513 + HSERO_RS03655 0.14 -0.1
798,708 + HSERO_RS03655 0.37 +0.1
798,846 + HSERO_RS03655 0.54 +1.1
798,995 + HSERO_RS03655 0.71 +0.9
799,136 + HSERO_RS03655 0.88 +0.3
799,255 + +0.9
799,263 - +0.9
799,427 + HSERO_RS03660 0.11 -0.0
799,566 - HSERO_RS03660 0.21 +1.2
799,806 + HSERO_RS03660 0.38 +0.2
799,806 + HSERO_RS03660 0.38 -1.1
799,938 + HSERO_RS03660 0.48 +0.6
800,013 - HSERO_RS03660 0.53 -0.2
800,209 - HSERO_RS03660 0.67 -0.5

Or see this region's nucleotide sequence